Wall clock time and date at job start Mon Mar 30 2020 07:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42903 * 113.99629 * 2 1 4 4 C 1.53000 * 109.46726 * 180.02562 * 3 2 1 5 5 C 1.53002 * 109.47233 * 299.99582 * 4 3 2 6 6 C 1.52996 * 109.47328 * 60.00051 * 4 3 2 7 7 C 1.53001 * 109.46886 * 180.02562 * 4 3 2 8 8 N 1.46902 * 109.46901 * 180.02562 * 7 4 3 9 9 C 1.46907 * 110.99665 * 179.97438 * 8 7 4 10 10 H 1.08995 * 110.43768 * 36.08251 * 9 8 7 11 11 C 1.54889 * 110.48454 * 273.54560 * 9 8 7 12 12 C 1.54894 * 102.74793 * 203.38348 * 11 9 8 13 13 C 1.54268 * 104.19783 * 37.93824 * 12 11 9 14 14 H 1.08995 * 110.03187 * 95.67251 * 13 12 11 15 15 C 1.50694 * 110.03394 * 217.06168 * 13 12 11 16 16 H 1.08004 * 120.00266 * 118.54488 * 15 13 12 17 17 C 1.37880 * 119.99798 * 298.54563 * 15 13 12 18 18 N 1.31511 * 120.00134 * 0.02562 * 17 15 13 19 19 Si 1.86805 * 119.99839 * 180.02562 * 17 15 13 20 20 H 1.48505 * 109.46980 * 89.99981 * 19 17 15 21 21 H 1.48496 * 109.46918 * 210.00119 * 19 17 15 22 22 H 1.48496 * 109.47007 * 330.00073 * 19 17 15 23 23 C 1.53885 * 106.59786 * 336.39444 * 13 12 11 24 24 H 1.09007 * 109.47484 * 299.99646 * 1 2 3 25 25 H 1.09004 * 109.47459 * 59.99983 * 1 2 3 26 26 H 1.09000 * 109.47196 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47382 * 59.99956 * 3 2 1 28 28 H 1.09001 * 109.46938 * 299.99942 * 3 2 1 29 29 H 1.09000 * 109.46986 * 60.00203 * 5 4 3 30 30 H 1.08993 * 109.47662 * 180.02562 * 5 4 3 31 31 H 1.09002 * 109.47075 * 300.00932 * 5 4 3 32 32 H 1.08992 * 109.47554 * 59.99639 * 6 4 3 33 33 H 1.09004 * 109.47108 * 179.97438 * 6 4 3 34 34 H 1.09000 * 109.46870 * 299.99783 * 6 4 3 35 35 H 1.09001 * 109.47109 * 299.99380 * 7 4 3 36 36 H 1.09002 * 109.47508 * 59.99571 * 7 4 3 37 37 H 1.00898 * 111.00229 * 56.04458 * 8 7 4 38 38 H 1.09000 * 110.75390 * 321.68776 * 11 9 8 39 39 H 1.08991 * 110.75836 * 85.06658 * 11 9 8 40 40 H 1.08999 * 110.48965 * 156.61856 * 12 11 9 41 41 H 1.08997 * 110.48534 * 279.26394 * 12 11 9 42 42 H 0.96999 * 120.00295 * 179.97438 * 18 17 15 43 43 H 1.08994 * 110.02837 * 240.71653 * 23 13 12 44 44 H 1.09000 * 110.03140 * 119.28152 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 3.9874 0.4253 1.2483 6 6 3.9864 0.4257 -1.2502 7 6 4.1576 2.5825 0.0000 8 7 5.6221 2.4665 -0.0012 9 6 6.2551 3.7921 -0.0013 10 1 5.6747 4.4911 0.6010 11 6 6.4065 4.3205 -1.4494 12 6 7.5672 5.3383 -1.3223 13 6 8.5380 4.6818 -0.3191 14 1 9.3209 4.1445 -0.8542 15 6 9.1494 5.7329 0.5710 16 1 8.9852 5.6991 1.6380 17 6 9.9183 6.7377 0.0233 18 7 10.1178 6.7792 -1.2760 19 14 10.6768 8.0403 1.1267 20 1 12.0216 7.5921 1.5694 21 1 10.8025 9.3144 0.3743 22 1 9.8094 8.2499 2.3136 23 6 7.7037 3.6986 0.5208 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.6885 1.8465 0.8900 28 1 1.6885 1.8464 -0.8900 29 1 3.5441 -0.5705 1.2484 30 1 5.0739 0.3396 1.2482 31 1 3.6660 0.9660 2.1385 32 1 3.6644 0.9666 -2.1399 33 1 5.0730 0.3400 -1.2508 34 1 3.5430 -0.5701 -1.2501 35 1 3.8357 3.1239 -0.8896 36 1 3.8363 3.1229 0.8904 37 1 5.9404 1.9141 -0.7833 38 1 6.6747 3.5120 -2.1294 39 1 5.4927 4.8157 -1.7774 40 1 8.0550 5.4831 -2.2862 41 1 7.2007 6.2880 -0.9326 42 1 10.6584 7.4863 -1.6614 43 1 7.7405 3.9818 1.5727 44 1 8.0819 2.6843 0.3932 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382255991.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:00 Heat of formation + Delta-G solvation = -90.223416 kcal Electronic energy + Delta-G solvation = -19607.857650 eV Core-core repulsion = 16751.300825 eV Total energy + Delta-G solvation = -2856.556826 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.08611 -39.05880 -37.20214 -34.89833 -33.12624 -29.82337 -28.60582 -28.20905 -28.05799 -26.82476 -25.72685 -24.40940 -21.38738 -20.67541 -19.77020 -18.48776 -17.38611 -16.87201 -16.74185 -16.49628 -16.21309 -15.82133 -15.27022 -14.81802 -14.48838 -14.18311 -14.14564 -13.77671 -13.53549 -13.38120 -12.97161 -12.82543 -12.67160 -12.57280 -12.41411 -12.37556 -12.26240 -11.90954 -11.66138 -11.54959 -11.45679 -11.39840 -11.29869 -11.00917 -10.72551 -10.54338 -10.44632 -9.14633 -8.10051 -6.19377 1.40947 1.41444 1.51821 2.44392 2.76324 3.19857 3.48217 3.87613 3.94140 3.98601 4.11403 4.15470 4.36243 4.46231 4.49075 4.51734 4.60894 4.67843 4.74642 4.78942 4.87336 4.88572 4.91259 4.98584 4.99921 5.07966 5.14136 5.15993 5.18547 5.29068 5.31436 5.45006 5.50333 5.53459 5.59704 5.69888 5.96715 6.01311 6.20632 6.30938 6.44202 6.58881 6.93055 7.47652 8.98494 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.050813 B = 0.003584 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 550.913205 B = 7811.396819 C = 7922.947400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.404 6.404 3 C 0.073 3.927 4 C -0.056 4.056 5 C -0.122 4.122 6 C -0.137 4.137 7 C 0.072 3.928 8 N -0.677 5.677 9 C 0.101 3.899 10 H 0.073 0.927 11 C -0.143 4.143 12 C -0.080 4.080 13 C 0.034 3.966 14 H -0.009 1.009 15 C -0.529 4.529 16 H 0.052 0.948 17 C 0.009 3.991 18 N -0.921 5.921 19 Si 0.952 3.048 20 H -0.277 1.277 21 H -0.284 1.284 22 H -0.267 1.267 23 C -0.093 4.093 24 H 0.046 0.954 25 H 0.047 0.953 26 H 0.095 0.905 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.046 0.954 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.060 0.940 35 H 0.033 0.967 36 H 0.069 0.931 37 H 0.343 0.657 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.028 0.972 41 H 0.030 0.970 42 H 0.259 0.741 43 H 0.045 0.955 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.327 -11.499 1.010 21.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.324 6.324 3 C -0.004 4.004 4 C -0.057 4.057 5 C -0.179 4.179 6 C -0.194 4.194 7 C -0.057 4.057 8 N -0.308 5.308 9 C -0.009 4.009 10 H 0.091 0.909 11 C -0.182 4.182 12 C -0.119 4.119 13 C 0.015 3.985 14 H 0.009 0.991 15 C -0.567 4.567 16 H 0.070 0.930 17 C -0.190 4.190 18 N -0.560 5.560 19 Si 0.777 3.223 20 H -0.203 1.203 21 H -0.210 1.210 22 H -0.192 1.192 23 C -0.131 4.131 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.114 0.886 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.079 0.921 35 H 0.051 0.949 36 H 0.088 0.912 37 H 0.163 0.837 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.047 0.953 41 H 0.049 0.951 42 H 0.068 0.932 43 H 0.064 0.936 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -18.096 -11.655 1.576 21.582 hybrid contribution 0.489 1.536 -0.617 1.726 sum -17.606 -10.119 0.959 20.330 Atomic orbital electron populations 1.22891 0.79974 1.03610 1.00578 1.87836 1.20848 1.28166 1.95503 1.22517 0.92824 0.84541 1.00542 1.20511 0.92793 0.95062 0.97291 1.21593 1.01396 0.99244 0.95685 1.21775 1.01123 1.00477 0.96051 1.21901 0.87734 0.95541 1.00567 1.60566 1.05778 1.14358 1.50104 1.22198 0.94746 0.89360 0.94562 0.90920 1.23160 0.98188 0.99108 0.97748 1.21952 0.95080 0.96587 0.98271 1.19270 0.92863 0.93063 0.93258 0.99073 1.21693 1.30695 1.10724 0.93588 0.92984 1.25783 0.96910 1.00031 0.96241 1.70103 1.40141 1.34097 1.11703 0.85652 0.78890 0.78629 0.79091 1.20254 1.20994 1.19163 1.22070 0.94161 0.98097 0.98752 0.93506 0.93474 0.88650 0.92800 0.92812 0.92886 0.92352 0.93486 0.92835 0.92408 0.92055 0.94873 0.91206 0.83704 0.91736 0.91820 0.95313 0.95149 0.93235 0.93610 0.92861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 113.37 1.25 1.58 16 2 O -0.40 -7.89 9.35 -148.98 -1.39 -9.28 16 3 C 0.07 1.34 4.81 71.98 0.35 1.68 16 4 C -0.06 -1.15 0.68 -52.18 -0.04 -1.19 16 5 C -0.12 -2.69 8.17 71.98 0.59 -2.10 16 6 C -0.14 -2.75 8.00 71.98 0.58 -2.18 16 7 C 0.07 1.66 4.49 86.30 0.39 2.05 16 8 N -0.68 -18.80 5.48 -486.01 -2.67 -21.46 16 9 C 0.10 3.48 3.16 45.99 0.15 3.63 16 10 H 0.07 2.54 7.87 -2.39 -0.02 2.52 16 11 C -0.14 -5.11 6.41 31.89 0.20 -4.91 16 12 C -0.08 -3.81 5.36 31.67 0.17 -3.64 16 13 C 0.03 1.75 2.84 -10.81 -0.03 1.72 16 14 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 15 C -0.53 -29.78 8.38 25.60 0.21 -29.57 16 16 H 0.05 2.88 7.33 -2.91 -0.02 2.86 16 17 C 0.01 0.49 5.32 84.66 0.45 0.94 16 18 N -0.92 -54.64 12.33 21.45 0.26 -54.37 16 19 Si 0.95 44.45 29.54 68.60 2.03 46.47 16 20 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 21 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 22 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 23 C -0.09 -3.86 6.18 31.32 0.19 -3.67 16 24 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 25 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 26 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.05 1.16 7.68 -2.39 -0.02 1.14 16 30 H 0.06 1.42 7.60 -2.39 -0.02 1.40 16 31 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.06 1.19 6.57 -2.38 -0.02 1.18 16 34 H 0.06 1.25 7.68 -2.39 -0.02 1.24 16 35 H 0.03 0.75 8.12 -2.39 -0.02 0.73 16 36 H 0.07 1.64 8.08 -2.39 -0.02 1.62 16 37 H 0.34 9.13 6.34 -89.70 -0.57 8.56 16 38 H 0.06 2.17 7.82 -2.39 -0.02 2.15 16 39 H 0.06 2.04 8.14 -2.39 -0.02 2.03 16 40 H 0.03 1.47 7.93 -2.39 -0.02 1.45 16 41 H 0.03 1.53 7.85 -2.39 -0.02 1.51 16 42 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 43 H 0.05 1.97 7.37 -2.39 -0.02 1.96 16 44 H 0.05 2.11 8.04 -2.39 -0.02 2.09 16 Total: -1.00 -61.38 340.71 3.05 -58.32 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: 0.36 Total: 15.96 kcal Atomic # 6 Polarization: -40.10 SS G_CDS: 4.46 Total: -35.64 kcal Atomic # 7 Polarization: -73.44 SS G_CDS: -2.40 Total: -75.84 kcal Atomic # 8 Polarization: -7.89 SS G_CDS: -1.39 Total: -9.28 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.47 kcal Total: -61.38 3.05 -58.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382255991.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.901 kcal (2) G-P(sol) polarization free energy of solvation -61.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds