Wall clock time and date at job start Mon Mar 30 2020 07:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42906 * 113.99821 * 2 1 4 4 C 1.53006 * 109.46748 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47164 * 299.99818 * 4 3 2 6 6 C 1.52997 * 109.47127 * 59.99982 * 4 3 2 7 7 C 1.52999 * 109.46626 * 179.97438 * 4 3 2 8 8 N 1.46906 * 109.46904 * 179.97438 * 7 4 3 9 9 C 1.46898 * 110.99895 * 179.97438 * 8 7 4 10 10 H 1.08990 * 110.43894 * 327.54888 * 9 8 7 11 11 C 1.54269 * 110.48094 * 90.23281 * 9 8 7 12 12 C 1.53878 * 106.59803 * 142.28607 * 11 9 8 13 13 C 1.54265 * 106.59873 * 0.02562 * 12 11 9 14 14 H 1.08997 * 110.48893 * 95.06651 * 13 12 11 15 15 C 1.50706 * 110.59646 * 217.65627 * 13 12 11 16 16 H 1.07998 * 119.99681 * 114.83855 * 15 13 12 17 17 C 1.37880 * 119.99782 * 294.83831 * 15 13 12 18 18 N 1.31507 * 120.00055 * 0.02562 * 17 15 13 19 19 Si 1.86795 * 119.99555 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47319 * 60.00344 * 19 17 15 21 21 H 1.48506 * 109.46953 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47489 * 299.99845 * 19 17 15 23 23 C 1.54888 * 104.19467 * 336.38661 * 13 12 11 24 24 H 1.08993 * 109.47448 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47367 * 300.00715 * 1 2 3 26 26 H 1.09000 * 109.46841 * 59.99911 * 1 2 3 27 27 H 1.09000 * 109.47490 * 59.99859 * 3 2 1 28 28 H 1.09001 * 109.47232 * 299.99213 * 3 2 1 29 29 H 1.09001 * 109.47375 * 59.99966 * 5 4 3 30 30 H 1.09002 * 109.46777 * 180.02562 * 5 4 3 31 31 H 1.09000 * 109.47140 * 299.99948 * 5 4 3 32 32 H 1.09004 * 109.47261 * 59.99697 * 6 4 3 33 33 H 1.09002 * 109.47153 * 179.97438 * 6 4 3 34 34 H 1.09001 * 109.47289 * 299.99953 * 6 4 3 35 35 H 1.08993 * 109.47839 * 299.99931 * 7 4 3 36 36 H 1.09000 * 109.47160 * 60.00369 * 7 4 3 37 37 H 1.00896 * 111.00352 * 303.95920 * 8 7 4 38 38 H 1.09000 * 110.03068 * 261.56842 * 11 9 8 39 39 H 1.09001 * 110.03805 * 23.00027 * 11 9 8 40 40 H 1.08998 * 110.03036 * 240.70745 * 12 11 9 41 41 H 1.09003 * 110.02898 * 119.28171 * 12 11 9 42 42 H 0.97001 * 120.00025 * 180.02562 * 18 17 15 43 43 H 1.08997 * 110.75915 * 279.63277 * 23 13 12 44 44 H 1.08997 * 110.91368 * 156.33088 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 6 3.9864 0.4257 1.2502 6 6 3.9874 0.4252 -1.2482 7 6 4.1577 2.5824 0.0000 8 7 5.6222 2.4664 0.0012 9 6 6.2552 3.7920 0.0000 10 1 5.6419 4.5062 -0.5493 11 6 6.4920 4.2784 1.4448 12 6 7.8433 5.0146 1.4448 13 6 8.3801 4.9505 0.0000 14 1 8.1106 5.8535 -0.5476 15 6 9.8751 4.7602 -0.0022 16 1 10.3031 3.8512 -0.3983 17 6 10.6963 5.7466 0.5015 18 7 10.1749 6.8532 0.9843 19 14 12.5492 5.5104 0.4995 20 1 13.0233 5.3268 -0.8958 21 1 13.2013 6.7063 1.0910 22 1 12.8962 4.3102 1.3022 23 6 7.6755 3.7145 -0.6125 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.6886 1.8465 0.8900 28 1 1.6887 1.8464 -0.8901 29 1 3.5430 -0.5701 1.2503 30 1 5.0730 0.3400 1.2508 31 1 3.6644 0.9668 2.1399 32 1 3.6661 0.9659 -2.1385 33 1 5.0740 0.3395 -1.2480 34 1 3.5440 -0.5706 -1.2483 35 1 3.8365 3.1228 -0.8904 36 1 3.8358 3.1238 0.8896 37 1 5.9405 1.9140 0.7832 38 1 5.6957 4.9596 1.7447 39 1 6.5309 3.4267 2.1239 40 1 8.5378 4.5202 2.1240 41 1 7.7026 6.0531 1.7447 42 1 10.7527 7.5473 1.3383 43 1 8.1765 2.7950 -0.3102 44 1 7.6323 3.7900 -1.6990 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382255994.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:02 Heat of formation + Delta-G solvation = -90.769077 kcal Electronic energy + Delta-G solvation = -19573.173219 eV Core-core repulsion = 16716.592731 eV Total energy + Delta-G solvation = -2856.580487 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.08236 -39.04605 -37.19518 -34.90282 -33.15728 -29.80944 -28.63417 -28.21138 -28.06091 -26.85761 -25.73762 -24.38375 -21.17708 -20.92451 -19.78596 -18.34062 -17.41827 -16.75937 -16.69967 -16.58469 -16.39091 -15.64704 -15.25758 -14.98647 -14.47673 -14.22446 -14.08073 -13.87306 -13.59637 -13.30491 -13.00607 -12.83869 -12.59960 -12.57998 -12.40583 -12.37261 -12.26134 -11.97045 -11.65579 -11.55275 -11.53201 -11.40234 -11.30418 -10.88131 -10.74542 -10.54378 -10.46178 -9.15216 -8.10588 -6.19737 1.41646 1.43053 1.50595 2.44536 2.76550 3.20090 3.48651 3.87264 3.93590 3.99557 4.10167 4.14373 4.30570 4.45870 4.48813 4.51534 4.60586 4.67575 4.72696 4.77373 4.87652 4.88207 4.89072 4.99214 5.05454 5.06639 5.13935 5.15738 5.19858 5.26963 5.31077 5.46001 5.48085 5.50089 5.59726 5.67212 5.94372 6.00924 6.22483 6.31220 6.43730 6.58900 6.92124 7.47490 8.98464 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.054887 B = 0.003540 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.015347 B = 7907.233519 C = 8073.727401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.405 6.405 3 C 0.073 3.927 4 C -0.056 4.056 5 C -0.137 4.137 6 C -0.122 4.122 7 C 0.072 3.928 8 N -0.677 5.677 9 C 0.097 3.903 10 H 0.075 0.925 11 C -0.139 4.139 12 C -0.086 4.086 13 C 0.037 3.963 14 H -0.003 1.003 15 C -0.530 4.530 16 H 0.052 0.948 17 C 0.010 3.990 18 N -0.922 5.922 19 Si 0.952 3.048 20 H -0.271 1.271 21 H -0.285 1.285 22 H -0.271 1.271 23 C -0.090 4.090 24 H 0.095 0.905 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.047 0.953 33 H 0.057 0.943 34 H 0.052 0.948 35 H 0.071 0.929 36 H 0.033 0.967 37 H 0.343 0.657 38 H 0.058 0.942 39 H 0.064 0.936 40 H 0.027 0.973 41 H 0.025 0.975 42 H 0.259 0.741 43 H 0.053 0.947 44 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.345 -11.708 -0.399 21.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.324 6.324 3 C -0.004 4.004 4 C -0.057 4.057 5 C -0.195 4.195 6 C -0.179 4.179 7 C -0.058 4.058 8 N -0.308 5.308 9 C -0.014 4.014 10 H 0.093 0.907 11 C -0.178 4.178 12 C -0.125 4.125 13 C 0.018 3.982 14 H 0.015 0.985 15 C -0.568 4.568 16 H 0.071 0.929 17 C -0.189 4.189 18 N -0.562 5.562 19 Si 0.778 3.222 20 H -0.196 1.196 21 H -0.211 1.211 22 H -0.196 1.196 23 C -0.128 4.128 24 H 0.113 0.887 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.089 0.911 36 H 0.051 0.949 37 H 0.163 0.837 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.046 0.954 41 H 0.044 0.956 42 H 0.068 0.932 43 H 0.072 0.928 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -18.158 -11.798 -1.001 21.677 hybrid contribution 0.847 0.971 1.046 1.660 sum -17.312 -10.827 0.045 20.418 Atomic orbital electron populations 1.22888 0.79966 1.03603 1.00589 1.87838 1.20856 1.28191 1.95505 1.22518 0.92783 0.84537 1.00562 1.20514 0.92826 0.95094 0.97248 1.21778 1.01087 1.00495 0.96093 1.21594 1.01373 0.99246 0.95712 1.21918 0.87714 0.95531 1.00594 1.60550 1.05752 1.14275 1.50245 1.22259 0.95054 0.89646 0.94398 0.90680 1.22820 0.97285 0.99903 0.97813 1.21818 0.94352 0.97262 0.99078 1.19439 0.93641 0.92840 0.92259 0.98496 1.21535 0.92892 1.02578 1.39821 0.92949 1.25779 1.02976 0.94997 0.95130 1.70089 1.36413 1.07671 1.41985 0.85705 0.80510 0.77478 0.78543 1.19604 1.21079 1.19598 1.22342 0.94106 0.98101 0.98251 0.88675 0.93481 0.93470 0.92809 0.92736 0.92072 0.92480 0.92833 0.93406 0.92404 0.92922 0.91056 0.94898 0.83689 0.92280 0.91770 0.95406 0.95585 0.93198 0.92794 0.93385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 113.37 1.25 1.58 16 2 O -0.40 -7.87 9.35 -148.98 -1.39 -9.26 16 3 C 0.07 1.33 4.81 71.98 0.35 1.67 16 4 C -0.06 -1.15 0.68 -52.18 -0.04 -1.19 16 5 C -0.14 -2.78 8.00 71.98 0.58 -2.20 16 6 C -0.12 -2.69 8.17 71.98 0.59 -2.10 16 7 C 0.07 1.64 4.51 86.30 0.39 2.03 16 8 N -0.68 -18.75 5.57 -486.08 -2.71 -21.46 16 9 C 0.10 3.27 3.19 45.98 0.15 3.41 16 10 H 0.07 2.50 7.82 -2.39 -0.02 2.49 16 11 C -0.14 -4.97 6.50 31.32 0.20 -4.76 16 12 C -0.09 -4.10 5.60 31.32 0.18 -3.92 16 13 C 0.04 1.90 2.72 -10.46 -0.03 1.87 16 14 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 15 C -0.53 -29.92 8.37 25.60 0.21 -29.71 16 16 H 0.05 2.90 7.77 -2.91 -0.02 2.88 16 17 C 0.01 0.54 5.35 84.66 0.45 1.00 16 18 N -0.92 -54.90 12.63 21.45 0.27 -54.63 16 19 Si 0.95 44.52 29.54 68.60 2.03 46.55 16 20 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 21 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 22 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 23 C -0.09 -3.73 5.96 31.88 0.19 -3.54 16 24 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 26 H 0.05 0.53 8.14 -2.39 -0.02 0.52 16 27 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.06 1.26 7.68 -2.39 -0.02 1.24 16 30 H 0.06 1.19 6.57 -2.39 -0.02 1.18 16 31 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 33 H 0.06 1.41 7.60 -2.39 -0.02 1.39 16 34 H 0.05 1.15 7.68 -2.39 -0.02 1.14 16 35 H 0.07 1.63 8.07 -2.39 -0.02 1.61 16 36 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.34 9.23 6.11 -89.70 -0.55 8.68 16 38 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.06 2.09 7.52 -2.39 -0.02 2.07 16 40 H 0.03 1.40 7.84 -2.39 -0.02 1.38 16 41 H 0.03 1.32 8.06 -2.39 -0.02 1.30 16 42 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 43 H 0.05 2.27 8.05 -2.39 -0.02 2.25 16 44 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -61.54 341.91 3.05 -58.49 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: 0.38 Total: 16.17 kcal Atomic # 6 Polarization: -40.33 SS G_CDS: 4.47 Total: -35.87 kcal Atomic # 7 Polarization: -73.65 SS G_CDS: -2.44 Total: -76.08 kcal Atomic # 8 Polarization: -7.87 SS G_CDS: -1.39 Total: -9.26 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -61.54 3.05 -58.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382255994.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.278 kcal (2) G-P(sol) polarization free energy of solvation -61.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds