Wall clock time and date at job start Mon Mar 30 2020 07:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42897 * 114.00202 * 2 1 4 4 C 1.53004 * 109.46957 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47312 * 59.99652 * 4 3 2 6 6 C 1.53002 * 109.47257 * 299.99548 * 4 3 2 7 7 C 1.53006 * 109.47036 * 179.97438 * 4 3 2 8 8 N 1.46902 * 109.47055 * 179.97438 * 7 4 3 9 9 C 1.46903 * 110.99776 * 179.97438 * 8 7 4 10 10 H 1.08999 * 110.01549 * 34.94383 * 9 8 7 11 11 C 1.53869 * 110.03061 * 273.54487 * 9 8 7 12 12 C 1.54266 * 106.60031 * 240.66752 * 11 9 8 13 13 C 1.54894 * 104.31305 * 336.32486 * 12 11 9 14 14 H 1.08993 * 110.76071 * 279.69749 * 13 12 11 15 15 C 1.50702 * 110.75529 * 156.31998 * 13 12 11 16 16 H 1.07999 * 120.00071 * 241.45749 * 15 13 12 17 17 C 1.37875 * 119.99476 * 61.45805 * 15 13 12 18 18 N 1.31504 * 120.00630 * 359.97438 * 17 15 13 19 19 Si 1.86805 * 119.99552 * 180.02562 * 17 15 13 20 20 H 1.48493 * 109.47350 * 89.99715 * 19 17 15 21 21 H 1.48497 * 109.47061 * 210.00302 * 19 17 15 22 22 H 1.48507 * 109.47068 * 329.99940 * 19 17 15 23 23 C 1.54266 * 110.07073 * 156.35698 * 9 8 7 24 24 H 1.09004 * 109.47670 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47481 * 300.00617 * 1 2 3 26 26 H 1.09005 * 109.47154 * 60.00425 * 1 2 3 27 27 H 1.08996 * 109.47222 * 59.99921 * 3 2 1 28 28 H 1.09003 * 109.46982 * 299.99352 * 3 2 1 29 29 H 1.08999 * 109.47343 * 180.02562 * 5 4 3 30 30 H 1.08994 * 109.47346 * 300.00172 * 5 4 3 31 31 H 1.09003 * 109.47281 * 60.00172 * 5 4 3 32 32 H 1.08996 * 109.47371 * 300.00278 * 6 4 3 33 33 H 1.09000 * 109.47044 * 59.99998 * 6 4 3 34 34 H 1.08999 * 109.47278 * 179.97438 * 6 4 3 35 35 H 1.08996 * 109.47028 * 60.00067 * 7 4 3 36 36 H 1.08995 * 109.46887 * 299.99794 * 7 4 3 37 37 H 1.00902 * 111.00137 * 56.04575 * 8 7 4 38 38 H 1.09001 * 110.02983 * 121.38504 * 11 9 8 39 39 H 1.08996 * 110.07773 * 359.97438 * 11 9 8 40 40 H 1.09002 * 110.48629 * 95.07240 * 12 11 9 41 41 H 1.08998 * 110.48744 * 217.58143 * 12 11 9 42 42 H 0.97000 * 120.00523 * 179.97438 * 18 17 15 43 43 H 1.09005 * 110.48526 * 261.59772 * 23 9 8 44 44 H 1.09007 * 110.48724 * 24.10256 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1845 0.0006 5 6 3.9874 0.4249 -1.2482 6 6 3.9864 0.4255 1.2503 7 6 4.1578 2.5822 0.0000 8 7 5.6223 2.4662 0.0012 9 6 6.2554 3.7918 0.0000 10 1 5.6582 4.4909 0.5853 11 6 6.4030 4.3040 -1.4433 12 6 7.9129 4.5039 -1.6878 13 6 8.5080 4.6970 -0.2709 14 1 8.3565 5.7191 0.0758 15 6 9.9712 4.3365 -0.2525 16 1 10.3211 3.5312 0.3763 17 6 10.8631 5.0350 -1.0384 18 7 10.4370 6.0153 -1.8044 19 14 12.6767 4.5877 -1.0161 20 1 12.9464 3.5621 -2.0555 21 1 13.4888 5.7995 -1.2938 22 1 13.0365 4.0459 0.3190 23 6 7.6809 3.6981 0.5823 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 1.6886 1.8463 0.8899 28 1 1.6886 1.8463 -0.8901 29 1 5.0739 0.3384 -1.2475 30 1 3.5440 -0.5708 -1.2482 31 1 3.6662 0.9656 -2.1385 32 1 3.6644 0.9666 2.1400 33 1 3.5430 -0.5702 1.2503 34 1 5.0729 0.3390 1.2505 35 1 3.8359 3.1237 0.8895 36 1 3.8366 3.1225 -0.8904 37 1 5.9418 1.9125 -0.7794 38 1 5.8774 5.2520 -1.5586 39 1 6.0054 3.5694 -2.1436 40 1 8.3420 3.6229 -2.1651 41 1 8.0865 5.3900 -2.2984 42 1 11.0646 6.5069 -2.3571 43 1 7.6852 3.9974 1.6305 44 1 8.0716 2.6863 0.4739 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000382255995.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:05 Heat of formation + Delta-G solvation = -72.799290 kcal Electronic energy + Delta-G solvation = -19637.112640 eV Core-core repulsion = 16781.311381 eV Total energy + Delta-G solvation = -2855.801259 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.07541 -37.75643 -36.03884 -33.15367 -31.44342 -27.99876 -27.59593 -27.14622 -26.96676 -25.88764 -24.10523 -23.12247 -19.42223 -19.22277 -18.72848 -16.59655 -16.36530 -16.00949 -15.56783 -15.25875 -14.51531 -14.28764 -14.18463 -13.61978 -13.25402 -13.13232 -12.88403 -12.34361 -12.25005 -11.81777 -11.74117 -11.66662 -11.54876 -11.02608 -10.96060 -10.83315 -10.68111 -10.58153 -10.48786 -10.41302 -10.00497 -9.82549 -9.73483 -9.48228 -9.04237 -8.72217 -8.31862 -7.89779 -5.95104 -3.97494 3.34091 3.40704 3.44412 3.54333 4.47994 4.64078 4.75649 4.85211 4.98358 5.09424 5.11582 5.29348 5.36686 5.39039 5.40560 5.50717 5.60317 5.67856 5.80400 5.83028 5.90251 5.92363 6.05706 6.08301 6.24440 6.33469 6.40044 6.55256 6.56207 6.74135 6.79684 6.88580 6.97772 7.10882 7.20303 7.39905 7.62834 7.77511 7.80995 7.97720 8.10329 8.53122 9.05321 9.66344 11.14106 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.049902 B = 0.003645 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.960895 B = 7679.796971 C = 7831.821439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.385 6.385 3 C 0.071 3.929 4 C -0.060 4.060 5 C -0.141 4.141 6 C -0.127 4.127 7 C 0.069 3.931 8 N -0.678 5.678 9 C 0.083 3.917 10 H 0.064 0.936 11 C -0.154 4.154 12 C -0.098 4.098 13 C 0.048 3.952 14 H 0.027 0.973 15 C -0.509 4.509 16 H 0.055 0.945 17 C 0.061 3.939 18 N -0.892 5.892 19 Si 0.888 3.112 20 H -0.282 1.282 21 H -0.288 1.288 22 H -0.274 1.274 23 C -0.102 4.102 24 H 0.083 0.917 25 H 0.039 0.961 26 H 0.038 0.962 27 H 0.048 0.952 28 H 0.046 0.954 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.048 0.952 32 H 0.046 0.954 33 H 0.052 0.948 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.026 0.974 37 H 0.340 0.660 38 H 0.047 0.953 39 H 0.043 0.957 40 H 0.045 0.955 41 H 0.065 0.935 42 H 0.258 0.742 43 H 0.044 0.956 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.715 -8.789 2.074 19.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.303 6.303 3 C -0.006 4.006 4 C -0.060 4.060 5 C -0.198 4.198 6 C -0.184 4.184 7 C -0.060 4.060 8 N -0.310 5.310 9 C -0.026 4.026 10 H 0.082 0.918 11 C -0.193 4.193 12 C -0.136 4.136 13 C 0.030 3.970 14 H 0.045 0.955 15 C -0.548 4.548 16 H 0.074 0.926 17 C -0.140 4.140 18 N -0.531 5.531 19 Si 0.717 3.283 20 H -0.208 1.208 21 H -0.214 1.214 22 H -0.199 1.199 23 C -0.140 4.140 24 H 0.102 0.898 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.066 0.934 28 H 0.064 0.936 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.044 0.956 37 H 0.160 0.840 38 H 0.066 0.934 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.084 0.916 42 H 0.068 0.932 43 H 0.063 0.937 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -17.500 -8.897 2.636 19.808 hybrid contribution 0.486 0.474 -1.103 1.295 sum -17.014 -8.423 1.534 19.047 Atomic orbital electron populations 1.22712 0.81531 1.02505 0.99780 1.87874 1.19105 1.28007 1.95338 1.22567 0.93789 0.84380 0.99831 1.20576 0.91826 0.96124 0.97514 1.21817 1.01512 1.00490 0.95977 1.21655 1.02337 0.99099 0.95307 1.21884 0.89553 0.94507 1.00102 1.60727 1.04087 1.16062 1.50135 1.22324 0.96688 0.88137 0.95453 0.91783 1.22972 1.00678 0.99394 0.96293 1.22244 0.89632 1.00822 1.00923 1.19640 0.93387 0.93760 0.90251 0.95513 1.21143 0.92121 1.16914 1.24575 0.92645 1.24980 0.98519 0.95000 0.95529 1.69959 1.34389 1.21599 1.27118 0.86654 0.85555 0.77786 0.78348 1.20795 1.21376 1.19932 1.22493 0.92211 1.01072 0.98241 0.89815 0.94274 0.94313 0.93383 0.93589 0.91966 0.91921 0.93335 0.93445 0.92904 0.91123 0.91367 0.95592 0.83994 0.93391 0.93861 0.93642 0.91623 0.93217 0.93676 0.92011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.36 16 2 O -0.38 -4.21 9.35 -35.23 -0.33 -4.54 16 3 C 0.07 0.75 4.81 37.16 0.18 0.92 16 4 C -0.06 -0.69 0.68 -154.50 -0.10 -0.80 16 5 C -0.14 -1.62 8.00 37.16 0.30 -1.32 16 6 C -0.13 -1.52 8.17 37.16 0.30 -1.22 16 7 C 0.07 0.89 4.47 -3.82 -0.02 0.87 16 8 N -0.68 -10.31 5.42 -105.54 -0.57 -10.88 16 9 C 0.08 1.48 3.23 -66.60 -0.21 1.27 16 10 H 0.06 1.11 7.83 -51.93 -0.41 0.70 16 11 C -0.15 -2.89 6.37 -25.62 -0.16 -3.05 16 12 C -0.10 -2.29 5.56 -25.07 -0.14 -2.43 16 13 C 0.05 1.21 2.84 -89.59 -0.25 0.95 16 14 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 15 C -0.51 -14.11 8.56 -34.44 -0.29 -14.40 16 16 H 0.06 1.52 7.79 -52.49 -0.41 1.12 16 17 C 0.06 1.70 5.33 -17.82 -0.10 1.61 16 18 N -0.89 -25.82 12.01 55.43 0.67 -25.15 16 19 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 22 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 23 C -0.10 -2.14 5.97 -24.88 -0.15 -2.29 16 24 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.74 6.57 -51.93 -0.34 0.40 16 30 H 0.06 0.72 7.68 -51.93 -0.40 0.32 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.05 0.63 7.68 -51.93 -0.40 0.23 16 34 H 0.07 0.93 7.60 -51.93 -0.39 0.53 16 35 H 0.07 0.87 8.07 -51.93 -0.42 0.45 16 36 H 0.03 0.34 8.10 -51.93 -0.42 -0.08 16 37 H 0.34 5.18 6.23 -39.29 -0.24 4.94 16 38 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.04 0.75 7.59 -51.93 -0.39 0.35 16 40 H 0.04 1.10 8.04 -51.93 -0.42 0.68 16 41 H 0.07 1.68 7.37 -51.93 -0.38 1.30 16 42 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 43 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.06 1.33 7.96 -51.93 -0.41 0.92 16 LS Contribution 340.86 15.07 5.14 5.14 Total: -1.00 -28.41 340.86 -8.06 -36.48 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -8.40 Total: 0.98 kcal Atomic # 6 Polarization: -18.98 SS G_CDS: 0.46 Total: -18.52 kcal Atomic # 7 Polarization: -36.13 SS G_CDS: 0.09 Total: -36.03 kcal Atomic # 8 Polarization: -4.21 SS G_CDS: -0.33 Total: -4.54 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -28.41 -8.06 -36.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382255995.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.323 kcal (2) G-P(sol) polarization free energy of solvation -28.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds