Wall clock time and date at job start Mon Mar 30 2020 07:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42897 * 114.00202 * 2 1 4 4 C 1.53004 * 109.46957 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47312 * 59.99652 * 4 3 2 6 6 C 1.53002 * 109.47257 * 299.99548 * 4 3 2 7 7 C 1.53006 * 109.47036 * 179.97438 * 4 3 2 8 8 N 1.46902 * 109.47055 * 179.97438 * 7 4 3 9 9 C 1.46903 * 110.99776 * 179.97438 * 8 7 4 10 10 H 1.08999 * 110.01549 * 34.94383 * 9 8 7 11 11 C 1.53869 * 110.03061 * 273.54487 * 9 8 7 12 12 C 1.54266 * 106.60031 * 240.66752 * 11 9 8 13 13 C 1.54894 * 104.31305 * 336.32486 * 12 11 9 14 14 H 1.08993 * 110.76071 * 279.69749 * 13 12 11 15 15 C 1.50702 * 110.75529 * 156.31998 * 13 12 11 16 16 H 1.07999 * 120.00071 * 241.45749 * 15 13 12 17 17 C 1.37875 * 119.99476 * 61.45805 * 15 13 12 18 18 N 1.31504 * 120.00630 * 359.97438 * 17 15 13 19 19 Si 1.86805 * 119.99552 * 180.02562 * 17 15 13 20 20 H 1.48493 * 109.47350 * 89.99715 * 19 17 15 21 21 H 1.48497 * 109.47061 * 210.00302 * 19 17 15 22 22 H 1.48507 * 109.47068 * 329.99940 * 19 17 15 23 23 C 1.54266 * 110.07073 * 156.35698 * 9 8 7 24 24 H 1.09004 * 109.47670 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47481 * 300.00617 * 1 2 3 26 26 H 1.09005 * 109.47154 * 60.00425 * 1 2 3 27 27 H 1.08996 * 109.47222 * 59.99921 * 3 2 1 28 28 H 1.09003 * 109.46982 * 299.99352 * 3 2 1 29 29 H 1.08999 * 109.47343 * 180.02562 * 5 4 3 30 30 H 1.08994 * 109.47346 * 300.00172 * 5 4 3 31 31 H 1.09003 * 109.47281 * 60.00172 * 5 4 3 32 32 H 1.08996 * 109.47371 * 300.00278 * 6 4 3 33 33 H 1.09000 * 109.47044 * 59.99998 * 6 4 3 34 34 H 1.08999 * 109.47278 * 179.97438 * 6 4 3 35 35 H 1.08996 * 109.47028 * 60.00067 * 7 4 3 36 36 H 1.08995 * 109.46887 * 299.99794 * 7 4 3 37 37 H 1.00902 * 111.00137 * 56.04575 * 8 7 4 38 38 H 1.09001 * 110.02983 * 121.38504 * 11 9 8 39 39 H 1.08996 * 110.07773 * 359.97438 * 11 9 8 40 40 H 1.09002 * 110.48629 * 95.07240 * 12 11 9 41 41 H 1.08998 * 110.48744 * 217.58143 * 12 11 9 42 42 H 0.97000 * 120.00523 * 179.97438 * 18 17 15 43 43 H 1.09005 * 110.48526 * 261.59772 * 23 9 8 44 44 H 1.09007 * 110.48724 * 24.10256 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1845 0.0006 5 6 3.9874 0.4249 -1.2482 6 6 3.9864 0.4255 1.2503 7 6 4.1578 2.5822 0.0000 8 7 5.6223 2.4662 0.0012 9 6 6.2554 3.7918 0.0000 10 1 5.6582 4.4909 0.5853 11 6 6.4030 4.3040 -1.4433 12 6 7.9129 4.5039 -1.6878 13 6 8.5080 4.6970 -0.2709 14 1 8.3565 5.7191 0.0758 15 6 9.9712 4.3365 -0.2525 16 1 10.3211 3.5312 0.3763 17 6 10.8631 5.0350 -1.0384 18 7 10.4370 6.0153 -1.8044 19 14 12.6767 4.5877 -1.0161 20 1 12.9464 3.5621 -2.0555 21 1 13.4888 5.7995 -1.2938 22 1 13.0365 4.0459 0.3190 23 6 7.6809 3.6981 0.5823 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 0.5138 -0.8901 27 1 1.6886 1.8463 0.8899 28 1 1.6886 1.8463 -0.8901 29 1 5.0739 0.3384 -1.2475 30 1 3.5440 -0.5708 -1.2482 31 1 3.6662 0.9656 -2.1385 32 1 3.6644 0.9666 2.1400 33 1 3.5430 -0.5702 1.2503 34 1 5.0729 0.3390 1.2505 35 1 3.8359 3.1237 0.8895 36 1 3.8366 3.1225 -0.8904 37 1 5.9418 1.9125 -0.7794 38 1 5.8774 5.2520 -1.5586 39 1 6.0054 3.5694 -2.1436 40 1 8.3420 3.6229 -2.1651 41 1 8.0865 5.3900 -2.2984 42 1 11.0646 6.5069 -2.3571 43 1 7.6852 3.9974 1.6305 44 1 8.0716 2.6863 0.4739 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000382255995.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:05 Heat of formation + Delta-G solvation = -89.144197 kcal Electronic energy + Delta-G solvation = -19637.821408 eV Core-core repulsion = 16781.311381 eV Total energy + Delta-G solvation = -2856.510027 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.10736 -39.04593 -37.16302 -34.90073 -33.08902 -29.79041 -28.62717 -28.20945 -28.06469 -26.85318 -25.73257 -24.46166 -21.10353 -20.87369 -19.77726 -18.37866 -17.42335 -16.78106 -16.66616 -16.61947 -16.38485 -15.57040 -15.24440 -14.94290 -14.56265 -14.20527 -14.08065 -13.94386 -13.54002 -13.27402 -12.99915 -12.82249 -12.66630 -12.58311 -12.38461 -12.36805 -12.22034 -11.94823 -11.66798 -11.49547 -11.48795 -11.39362 -11.29287 -10.87774 -10.78017 -10.54277 -10.44259 -9.16430 -8.09393 -6.19075 1.41503 1.42080 1.52531 2.44759 2.77018 3.20650 3.49803 3.87091 3.94019 4.00556 4.11059 4.15404 4.30465 4.46587 4.48673 4.51695 4.61154 4.67341 4.75905 4.77666 4.87777 4.87957 4.88972 4.98564 5.07031 5.10605 5.13922 5.15730 5.19216 5.28114 5.30665 5.46102 5.47841 5.49407 5.59752 5.68028 5.95518 6.03483 6.25084 6.33332 6.42939 6.57794 6.91601 7.48192 8.98714 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.049902 B = 0.003645 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 560.960895 B = 7679.796971 C = 7831.821439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.405 6.405 3 C 0.074 3.926 4 C -0.056 4.056 5 C -0.137 4.137 6 C -0.121 4.121 7 C 0.072 3.928 8 N -0.678 5.678 9 C 0.097 3.903 10 H 0.076 0.924 11 C -0.141 4.141 12 C -0.090 4.090 13 C 0.037 3.963 14 H -0.002 1.002 15 C -0.529 4.529 16 H 0.051 0.949 17 C 0.011 3.989 18 N -0.920 5.920 19 Si 0.952 3.048 20 H -0.276 1.276 21 H -0.284 1.284 22 H -0.268 1.268 23 C -0.093 4.093 24 H 0.094 0.906 25 H 0.047 0.953 26 H 0.046 0.954 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.060 0.940 31 H 0.052 0.948 32 H 0.048 0.952 33 H 0.051 0.949 34 H 0.056 0.944 35 H 0.073 0.927 36 H 0.032 0.968 37 H 0.341 0.659 38 H 0.056 0.944 39 H 0.063 0.937 40 H 0.029 0.971 41 H 0.035 0.965 42 H 0.259 0.741 43 H 0.047 0.953 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.020 -9.648 2.278 21.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.324 6.324 3 C -0.003 4.003 4 C -0.057 4.057 5 C -0.195 4.195 6 C -0.179 4.179 7 C -0.058 4.058 8 N -0.310 5.310 9 C -0.013 4.013 10 H 0.094 0.906 11 C -0.181 4.181 12 C -0.129 4.129 13 C 0.019 3.981 14 H 0.016 0.984 15 C -0.568 4.568 16 H 0.069 0.931 17 C -0.188 4.188 18 N -0.560 5.560 19 Si 0.778 3.222 20 H -0.202 1.202 21 H -0.210 1.210 22 H -0.193 1.193 23 C -0.131 4.131 24 H 0.113 0.887 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.051 0.949 37 H 0.161 0.839 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.047 0.953 41 H 0.054 0.946 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -18.822 -9.770 2.848 21.397 hybrid contribution 0.866 0.727 -1.150 1.612 sum -17.957 -9.043 1.698 20.177 Atomic orbital electron populations 1.22889 0.79957 1.03595 1.00600 1.87837 1.20869 1.28222 1.95505 1.22512 0.92714 0.84532 1.00590 1.20516 0.92875 0.95143 0.97149 1.21778 1.00995 1.00517 0.96196 1.21587 1.01314 0.99245 0.95732 1.21916 0.87727 0.95487 1.00626 1.60629 1.05691 1.14326 1.50322 1.22059 0.95095 0.89697 0.94424 0.90562 1.22860 0.97025 1.00610 0.97569 1.22019 0.93071 0.98577 0.99192 1.19635 0.93162 0.93183 0.92159 0.98422 1.21513 0.93920 1.16835 1.24486 0.93073 1.25756 1.02812 0.94964 0.95232 1.70086 1.35707 1.22456 1.27709 0.85651 0.80407 0.77608 0.78573 1.20173 1.20986 1.19288 1.22322 0.93723 0.99229 0.97821 0.88706 0.93421 0.93489 0.92624 0.92829 0.92664 0.92083 0.92887 0.93267 0.92969 0.92516 0.90863 0.94945 0.83865 0.92493 0.91871 0.95256 0.94614 0.93223 0.93440 0.92727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 113.37 1.25 1.59 16 2 O -0.41 -7.98 9.35 -148.98 -1.39 -9.37 16 3 C 0.07 1.35 4.81 71.98 0.35 1.69 16 4 C -0.06 -1.18 0.68 -52.18 -0.04 -1.21 16 5 C -0.14 -2.91 8.00 71.98 0.58 -2.34 16 6 C -0.12 -2.72 8.17 71.98 0.59 -2.13 16 7 C 0.07 1.65 4.47 86.30 0.39 2.04 16 8 N -0.68 -19.23 5.42 -487.83 -2.64 -21.87 16 9 C 0.10 3.29 3.23 45.64 0.15 3.44 16 10 H 0.08 2.45 7.83 -2.39 -0.02 2.43 16 11 C -0.14 -5.11 6.37 31.32 0.20 -4.91 16 12 C -0.09 -4.28 5.56 31.67 0.18 -4.10 16 13 C 0.04 1.91 2.84 -10.12 -0.03 1.88 16 14 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 15 C -0.53 -29.86 8.56 25.60 0.22 -29.64 16 16 H 0.05 2.85 7.79 -2.91 -0.02 2.83 16 17 C 0.01 0.61 5.33 84.66 0.45 1.06 16 18 N -0.92 -54.38 12.01 21.44 0.26 -54.12 16 19 Si 0.95 44.49 29.54 68.60 2.03 46.51 16 20 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 21 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 22 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 23 C -0.09 -3.86 5.97 31.79 0.19 -3.67 16 24 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 27 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.05 1.23 6.57 -2.39 -0.02 1.22 16 30 H 0.06 1.31 7.68 -2.39 -0.02 1.29 16 31 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.05 1.16 7.68 -2.39 -0.02 1.15 16 34 H 0.06 1.42 7.60 -2.39 -0.02 1.40 16 35 H 0.07 1.65 8.07 -2.39 -0.02 1.63 16 36 H 0.03 0.73 8.10 -2.39 -0.02 0.71 16 37 H 0.34 9.75 6.23 -89.69 -0.56 9.19 16 38 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.06 2.04 7.59 -2.39 -0.02 2.02 16 40 H 0.03 1.44 8.04 -2.39 -0.02 1.42 16 41 H 0.03 1.87 7.37 -2.39 -0.02 1.85 16 42 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 43 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 44 H 0.05 2.33 7.96 -2.38 -0.02 2.31 16 Total: -1.00 -61.07 340.86 3.08 -57.98 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: 0.37 Total: 17.17 kcal Atomic # 6 Polarization: -40.77 SS G_CDS: 4.46 Total: -36.31 kcal Atomic # 7 Polarization: -73.61 SS G_CDS: -2.38 Total: -75.99 kcal Atomic # 8 Polarization: -7.98 SS G_CDS: -1.39 Total: -9.37 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.51 kcal Total: -61.07 3.08 -57.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000382255995.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.163 kcal (2) G-P(sol) polarization free energy of solvation -61.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds