Wall clock time and date at job start Mon Mar 30 2020 07:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46795 * 2 1 4 4 C 1.52999 * 109.47058 * 240.00212 * 2 1 3 5 5 N 1.46901 * 109.47373 * 60.00200 * 4 2 1 6 6 C 1.46901 * 111.00161 * 180.02562 * 5 4 2 7 7 C 1.53000 * 109.47194 * 179.97438 * 6 5 4 8 8 O 1.42902 * 109.46919 * 64.99499 * 7 6 5 9 9 C 1.42904 * 113.99538 * 179.97438 * 8 7 6 10 10 C 1.50707 * 109.46746 * 180.02562 * 9 8 7 11 11 H 1.07997 * 120.00006 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99729 * 180.02562 * 10 9 8 13 13 N 1.31512 * 120.00117 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99673 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47317 * 90.00111 * 14 12 10 16 16 H 1.48506 * 109.46834 * 209.99802 * 14 12 10 17 17 H 1.48505 * 109.47282 * 329.99450 * 14 12 10 18 18 C 1.53002 * 109.47296 * 120.00009 * 2 1 3 19 19 C 1.53776 * 113.61267 * 55.03586 * 18 2 1 20 20 C 1.53780 * 87.08131 * 220.01980 * 19 18 2 21 21 C 1.53779 * 113.61219 * 317.53885 * 18 2 1 22 22 H 1.08994 * 109.47227 * 306.29087 * 1 2 3 23 23 H 1.09000 * 109.46995 * 66.29693 * 1 2 3 24 24 H 1.09000 * 109.46894 * 186.29376 * 1 2 3 25 25 H 1.09001 * 109.46866 * 185.54485 * 3 2 1 26 26 H 1.09000 * 109.47105 * 305.54969 * 3 2 1 27 27 H 1.08995 * 109.46939 * 65.54802 * 3 2 1 28 28 H 1.09004 * 109.47095 * 179.97438 * 4 2 1 29 29 H 1.09000 * 109.47311 * 299.99710 * 4 2 1 30 30 H 1.00897 * 111.00174 * 56.03878 * 5 4 2 31 31 H 1.08994 * 109.46865 * 299.99846 * 6 5 4 32 32 H 1.09004 * 109.47004 * 59.99190 * 6 5 4 33 33 H 1.08992 * 109.47145 * 184.99680 * 7 6 5 34 34 H 1.08998 * 109.46915 * 304.99690 * 7 6 5 35 35 H 1.08994 * 109.47464 * 300.00112 * 9 8 7 36 36 H 1.08995 * 109.47196 * 60.00877 * 9 8 7 37 37 H 0.97003 * 119.99675 * 179.97438 * 13 12 10 38 38 H 1.09000 * 112.90755 * 186.28389 * 18 2 1 39 39 H 1.08999 * 113.61935 * 105.46785 * 19 18 2 40 40 H 1.09002 * 113.69042 * 334.57801 * 19 18 2 41 41 H 1.09004 * 113.61890 * 139.98371 * 20 19 18 42 42 H 1.08997 * 113.61298 * 270.88635 * 20 19 18 43 43 H 1.09004 * 113.61476 * 25.43247 * 21 18 2 44 44 H 1.09001 * 113.61636 * 254.52911 * 21 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.5504 -0.0287 -2.4487 6 6 2.0209 -0.6951 -3.6704 7 6 1.4914 0.0528 -4.8956 8 8 2.0604 1.3630 -4.9365 9 6 1.6292 2.1493 -6.0491 10 6 2.2883 3.5035 -5.9926 11 1 2.9686 3.7397 -5.1878 12 6 2.0226 4.4407 -6.9683 13 7 1.1945 4.1528 -7.9486 14 14 2.8401 6.1189 -6.8986 15 1 4.1255 6.0746 -7.6409 16 1 1.9461 7.1309 -7.5168 17 1 3.0982 6.4853 -5.4828 18 6 2.0401 -0.7213 1.2492 19 6 1.4842 -2.1462 1.4079 20 6 1.3632 -1.8471 2.9115 21 6 1.2654 -0.3611 2.5279 22 1 -0.3633 0.6082 0.8283 23 1 -0.3633 0.4131 -0.9410 24 1 -0.3633 -1.0215 0.1127 25 1 3.1255 1.4442 -0.0993 26 1 1.5977 1.9843 -0.8361 27 1 1.7600 1.9269 0.9355 28 1 3.1301 -0.7208 -1.2495 29 1 1.6767 -1.7489 -1.2493 30 1 1.8198 0.9436 -2.4401 31 1 3.1107 -0.6953 -3.6873 32 1 1.6572 -1.7225 -3.6869 33 1 1.7656 -0.4908 -5.7996 34 1 0.4060 0.1298 -4.8331 35 1 1.9067 1.6491 -6.9769 36 1 0.5466 2.2700 -6.0110 37 1 1.0074 4.8123 -8.6348 38 1 3.1224 -0.6597 1.3625 39 1 2.2089 -2.9262 1.1748 40 1 0.5243 -2.2993 0.9146 41 1 0.4534 -2.2422 3.3636 42 1 2.2605 -2.0933 3.4792 43 1 0.2456 -0.0247 2.3404 44 1 1.8136 0.3001 3.1990 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385047215.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:37 Heat of formation + Delta-G solvation = -48.674247 kcal Electronic energy + Delta-G solvation = -19357.543798 eV Core-core repulsion = 16502.788680 eV Total energy + Delta-G solvation = -2854.755118 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.03576 -37.23642 -35.93276 -33.36737 -32.52070 -28.84190 -27.28135 -26.87202 -26.22075 -25.37253 -23.89186 -22.33775 -21.27895 -20.14118 -18.20415 -16.47710 -16.02574 -15.87546 -15.53078 -15.14137 -14.96345 -14.41022 -14.25131 -13.63535 -13.28230 -13.23080 -12.95827 -12.72365 -12.19301 -12.07725 -11.82132 -11.60731 -11.51786 -11.34641 -11.21133 -11.04729 -10.87462 -10.79716 -10.73883 -10.55610 -10.32124 -10.09434 -10.02467 -9.83088 -9.09478 -8.80978 -8.15593 -8.10533 -6.10033 -4.11771 3.30555 3.35553 3.40765 4.28471 4.35732 4.49592 4.54209 4.68220 4.74861 4.96901 5.03264 5.15302 5.16459 5.26424 5.45672 5.50573 5.57190 5.61413 5.63045 5.72019 5.74208 5.76218 5.79538 5.82862 5.89225 6.04719 6.07981 6.13462 6.17506 6.22841 6.23963 6.34346 6.39025 6.50201 6.60876 7.13132 7.31217 7.45640 7.73913 7.79961 8.16632 8.59549 9.01540 9.53066 11.01514 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.032391 B = 0.003622 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.243275 B = 7729.243495 C = 8268.417160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.051 4.051 3 C -0.146 4.146 4 C 0.071 3.929 5 N -0.686 5.686 6 C 0.066 3.934 7 C 0.062 3.938 8 O -0.399 6.399 9 C 0.197 3.803 10 C -0.514 4.514 11 H 0.065 0.935 12 C 0.056 3.944 13 N -0.898 5.898 14 Si 0.907 3.093 15 H -0.279 1.279 16 H -0.285 1.285 17 H -0.272 1.272 18 C -0.099 4.099 19 C -0.140 4.140 20 C -0.144 4.144 21 C -0.140 4.140 22 H 0.048 0.952 23 H 0.072 0.928 24 H 0.051 0.949 25 H 0.050 0.950 26 H 0.065 0.935 27 H 0.053 0.947 28 H 0.023 0.977 29 H 0.067 0.933 30 H 0.355 0.645 31 H 0.032 0.968 32 H 0.073 0.927 33 H 0.039 0.961 34 H 0.046 0.954 35 H 0.003 0.997 36 H 0.006 0.994 37 H 0.264 0.736 38 H 0.084 0.916 39 H 0.061 0.939 40 H 0.086 0.914 41 H 0.063 0.937 42 H 0.075 0.925 43 H 0.088 0.912 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.095 -11.783 18.545 21.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.051 4.051 3 C -0.203 4.203 4 C -0.059 4.059 5 N -0.320 5.320 6 C -0.063 4.063 7 C -0.016 4.016 8 O -0.319 6.319 9 C 0.123 3.877 10 C -0.552 4.552 11 H 0.084 0.916 12 C -0.145 4.145 13 N -0.538 5.538 14 Si 0.735 3.265 15 H -0.205 1.205 16 H -0.211 1.211 17 H -0.196 1.196 18 C -0.118 4.118 19 C -0.177 4.177 20 C -0.181 4.181 21 C -0.177 4.177 22 H 0.067 0.933 23 H 0.091 0.909 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.084 0.916 27 H 0.072 0.928 28 H 0.042 0.958 29 H 0.085 0.915 30 H 0.176 0.824 31 H 0.050 0.950 32 H 0.091 0.909 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.021 0.979 36 H 0.024 0.976 37 H 0.073 0.927 38 H 0.103 0.897 39 H 0.080 0.920 40 H 0.104 0.896 41 H 0.082 0.918 42 H 0.093 0.907 43 H 0.106 0.894 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.650 -11.948 18.503 22.035 hybrid contribution 1.179 0.985 -0.379 1.582 sum 0.529 -10.964 18.124 21.189 Atomic orbital electron populations 1.21911 0.94049 1.01195 1.02310 1.20435 0.96362 0.95127 0.93182 1.21875 1.00668 0.95627 1.02139 1.21921 0.96409 0.97904 0.89668 1.60503 1.63224 1.07629 1.00595 1.21928 0.97586 0.97229 0.89601 1.22295 0.97401 0.86354 0.95515 1.87786 1.69723 1.23712 1.50727 1.20167 0.94634 0.89763 0.83137 1.21054 1.26953 0.97050 1.10187 0.91644 1.24950 0.95376 0.99153 0.95051 1.69966 1.35301 1.35435 1.13060 0.86346 0.79049 0.82753 0.78393 1.20512 1.21070 1.19626 1.22559 0.99334 0.95589 0.94299 1.23021 1.01682 0.96808 0.96188 1.22798 1.01562 0.97095 0.96684 1.23054 1.01364 0.96213 0.97048 0.93290 0.90885 0.93019 0.93100 0.91584 0.92755 0.95837 0.91498 0.82439 0.94999 0.90882 0.94283 0.93597 0.97875 0.97627 0.92665 0.89738 0.91998 0.89554 0.91815 0.90657 0.89366 0.92023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 7.46 37.16 0.28 -1.23 16 2 C -0.05 -0.55 0.50 -154.50 -0.08 -0.63 16 3 C -0.15 -1.70 7.96 37.16 0.30 -1.41 16 4 C 0.07 0.87 4.50 -3.82 -0.02 0.85 16 5 N -0.69 -10.27 5.61 -113.78 -0.64 -10.91 16 6 C 0.07 1.02 6.11 -3.82 -0.02 1.00 16 7 C 0.06 1.18 6.28 37.16 0.23 1.42 16 8 O -0.40 -9.64 9.85 -35.23 -0.35 -9.98 16 9 C 0.20 5.47 5.69 36.01 0.20 5.67 16 10 C -0.51 -15.22 9.43 -34.44 -0.32 -15.55 16 11 H 0.07 1.92 7.81 -52.49 -0.41 1.51 16 12 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 13 N -0.90 -27.10 13.29 55.43 0.74 -26.37 16 14 Si 0.91 21.94 29.54 -169.99 -5.02 16.92 16 15 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 17 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 18 C -0.10 -0.92 3.03 -89.81 -0.27 -1.20 16 19 C -0.14 -1.20 6.71 -25.92 -0.17 -1.37 16 20 C -0.14 -1.13 8.08 -25.92 -0.21 -1.34 16 21 C -0.14 -1.19 7.15 -25.92 -0.19 -1.37 16 22 H 0.05 0.49 6.43 -51.93 -0.33 0.16 16 23 H 0.07 0.95 7.42 -51.93 -0.39 0.56 16 24 H 0.05 0.53 6.00 -51.93 -0.31 0.22 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.07 0.88 6.86 -51.93 -0.36 0.52 16 27 H 0.05 0.58 7.94 -51.93 -0.41 0.16 16 28 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.78 7.61 -51.93 -0.39 0.39 16 30 H 0.35 5.96 6.46 -39.29 -0.25 5.70 16 31 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 16 36 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 37 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 38 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.09 0.76 6.02 -51.93 -0.31 0.45 16 41 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.09 0.76 5.72 -51.93 -0.30 0.47 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 340.39 15.07 5.13 5.13 Total: -1.00 -30.03 340.39 -8.61 -38.63 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -8.10 Total: 0.21 kcal Atomic # 6 Polarization: -13.26 SS G_CDS: -0.37 Total: -13.63 kcal Atomic # 7 Polarization: -37.37 SS G_CDS: 0.10 Total: -37.27 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: -0.35 Total: -9.98 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.03 -8.61 -38.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385047215.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.040 kcal (2) G-P(sol) polarization free energy of solvation -30.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds