Wall clock time and date at job start Mon Mar 30 2020 07:02:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46795 * 2 1 4 4 C 1.52999 * 109.47058 * 240.00212 * 2 1 3 5 5 N 1.46901 * 109.47373 * 60.00200 * 4 2 1 6 6 C 1.46901 * 111.00161 * 180.02562 * 5 4 2 7 7 C 1.53000 * 109.47194 * 179.97438 * 6 5 4 8 8 O 1.42902 * 109.46919 * 64.99499 * 7 6 5 9 9 C 1.42904 * 113.99538 * 179.97438 * 8 7 6 10 10 C 1.50707 * 109.46746 * 180.02562 * 9 8 7 11 11 H 1.07997 * 120.00006 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99729 * 180.02562 * 10 9 8 13 13 N 1.31512 * 120.00117 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99673 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47317 * 90.00111 * 14 12 10 16 16 H 1.48506 * 109.46834 * 209.99802 * 14 12 10 17 17 H 1.48505 * 109.47282 * 329.99450 * 14 12 10 18 18 C 1.53002 * 109.47296 * 120.00009 * 2 1 3 19 19 C 1.53776 * 113.61267 * 55.03586 * 18 2 1 20 20 C 1.53780 * 87.08131 * 220.01980 * 19 18 2 21 21 C 1.53779 * 113.61219 * 317.53885 * 18 2 1 22 22 H 1.08994 * 109.47227 * 306.29087 * 1 2 3 23 23 H 1.09000 * 109.46995 * 66.29693 * 1 2 3 24 24 H 1.09000 * 109.46894 * 186.29376 * 1 2 3 25 25 H 1.09001 * 109.46866 * 185.54485 * 3 2 1 26 26 H 1.09000 * 109.47105 * 305.54969 * 3 2 1 27 27 H 1.08995 * 109.46939 * 65.54802 * 3 2 1 28 28 H 1.09004 * 109.47095 * 179.97438 * 4 2 1 29 29 H 1.09000 * 109.47311 * 299.99710 * 4 2 1 30 30 H 1.00897 * 111.00174 * 56.03878 * 5 4 2 31 31 H 1.08994 * 109.46865 * 299.99846 * 6 5 4 32 32 H 1.09004 * 109.47004 * 59.99190 * 6 5 4 33 33 H 1.08992 * 109.47145 * 184.99680 * 7 6 5 34 34 H 1.08998 * 109.46915 * 304.99690 * 7 6 5 35 35 H 1.08994 * 109.47464 * 300.00112 * 9 8 7 36 36 H 1.08995 * 109.47196 * 60.00877 * 9 8 7 37 37 H 0.97003 * 119.99675 * 179.97438 * 13 12 10 38 38 H 1.09000 * 112.90755 * 186.28389 * 18 2 1 39 39 H 1.08999 * 113.61935 * 105.46785 * 19 18 2 40 40 H 1.09002 * 113.69042 * 334.57801 * 19 18 2 41 41 H 1.09004 * 113.61890 * 139.98371 * 20 19 18 42 42 H 1.08997 * 113.61298 * 270.88635 * 20 19 18 43 43 H 1.09004 * 113.61476 * 25.43247 * 21 18 2 44 44 H 1.09001 * 113.61636 * 254.52911 * 21 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 1.5504 -0.0287 -2.4487 6 6 2.0209 -0.6951 -3.6704 7 6 1.4914 0.0528 -4.8956 8 8 2.0604 1.3630 -4.9365 9 6 1.6292 2.1493 -6.0491 10 6 2.2883 3.5035 -5.9926 11 1 2.9686 3.7397 -5.1878 12 6 2.0226 4.4407 -6.9683 13 7 1.1945 4.1528 -7.9486 14 14 2.8401 6.1189 -6.8986 15 1 4.1255 6.0746 -7.6409 16 1 1.9461 7.1309 -7.5168 17 1 3.0982 6.4853 -5.4828 18 6 2.0401 -0.7213 1.2492 19 6 1.4842 -2.1462 1.4079 20 6 1.3632 -1.8471 2.9115 21 6 1.2654 -0.3611 2.5279 22 1 -0.3633 0.6082 0.8283 23 1 -0.3633 0.4131 -0.9410 24 1 -0.3633 -1.0215 0.1127 25 1 3.1255 1.4442 -0.0993 26 1 1.5977 1.9843 -0.8361 27 1 1.7600 1.9269 0.9355 28 1 3.1301 -0.7208 -1.2495 29 1 1.6767 -1.7489 -1.2493 30 1 1.8198 0.9436 -2.4401 31 1 3.1107 -0.6953 -3.6873 32 1 1.6572 -1.7225 -3.6869 33 1 1.7656 -0.4908 -5.7996 34 1 0.4060 0.1298 -4.8331 35 1 1.9067 1.6491 -6.9769 36 1 0.5466 2.2700 -6.0110 37 1 1.0074 4.8123 -8.6348 38 1 3.1224 -0.6597 1.3625 39 1 2.2089 -2.9262 1.1748 40 1 0.5243 -2.2993 0.9146 41 1 0.4534 -2.2422 3.3636 42 1 2.2605 -2.0933 3.4792 43 1 0.2456 -0.0247 2.3404 44 1 1.8136 0.3001 3.1990 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385047215.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:37 Heat of formation + Delta-G solvation = -66.521371 kcal Electronic energy + Delta-G solvation = -19358.317707 eV Core-core repulsion = 16502.788680 eV Total energy + Delta-G solvation = -2855.529028 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.82841 -38.86617 -37.17977 -35.04296 -34.17908 -30.41718 -28.76481 -28.19575 -27.14149 -26.08439 -24.92156 -24.50269 -22.67827 -20.91384 -19.03064 -18.63424 -17.55718 -17.12570 -16.63621 -16.52846 -16.22796 -16.07003 -15.47710 -14.93679 -14.75045 -14.44505 -14.00116 -13.70510 -13.53371 -13.31108 -13.10516 -12.98567 -12.75756 -12.63452 -12.59070 -12.37290 -12.27722 -12.17731 -11.95104 -11.77964 -11.60611 -11.28689 -11.08879 -10.89089 -10.81205 -10.70529 -10.23841 -9.29340 -8.32800 -6.45369 1.39451 1.42384 1.54450 2.34077 3.01050 3.20157 3.24863 3.70568 3.80386 3.90085 4.01510 4.14588 4.21916 4.30363 4.34886 4.37243 4.55919 4.62638 4.70512 4.75535 4.81702 4.85099 4.86785 4.92253 4.95549 4.96710 5.01981 5.11239 5.13760 5.17017 5.18269 5.23672 5.30367 5.46930 5.51572 5.53903 5.60003 5.79368 5.94949 6.15623 6.43910 6.52586 6.80865 7.26607 8.79644 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.032391 B = 0.003622 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.243275 B = 7729.243495 C = 8268.417160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.046 4.046 3 C -0.144 4.144 4 C 0.073 3.927 5 N -0.693 5.693 6 C 0.075 3.925 7 C 0.055 3.945 8 O -0.409 6.409 9 C 0.212 3.788 10 C -0.548 4.548 11 H 0.062 0.938 12 C 0.005 3.995 13 N -0.931 5.931 14 Si 0.984 3.016 15 H -0.268 1.268 16 H -0.274 1.274 17 H -0.264 1.264 18 C -0.099 4.099 19 C -0.139 4.139 20 C -0.138 4.138 21 C -0.139 4.139 22 H 0.057 0.943 23 H 0.048 0.952 24 H 0.060 0.940 25 H 0.047 0.953 26 H 0.043 0.957 27 H 0.064 0.936 28 H 0.022 0.978 29 H 0.078 0.922 30 H 0.342 0.658 31 H 0.029 0.971 32 H 0.103 0.897 33 H 0.047 0.953 34 H 0.043 0.957 35 H -0.016 1.016 36 H -0.016 1.016 37 H 0.271 0.729 38 H 0.084 0.916 39 H 0.065 0.935 40 H 0.084 0.916 41 H 0.070 0.930 42 H 0.082 0.918 43 H 0.087 0.913 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.483 -11.939 19.919 23.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.046 4.046 3 C -0.201 4.201 4 C -0.056 4.056 5 N -0.325 5.325 6 C -0.054 4.054 7 C -0.022 4.022 8 O -0.329 6.329 9 C 0.137 3.863 10 C -0.585 4.585 11 H 0.080 0.920 12 C -0.193 4.193 13 N -0.570 5.570 14 Si 0.806 3.194 15 H -0.193 1.193 16 H -0.199 1.199 17 H -0.188 1.188 18 C -0.118 4.118 19 C -0.176 4.176 20 C -0.176 4.176 21 C -0.176 4.176 22 H 0.076 0.924 23 H 0.067 0.933 24 H 0.079 0.921 25 H 0.066 0.934 26 H 0.063 0.937 27 H 0.083 0.917 28 H 0.040 0.960 29 H 0.096 0.904 30 H 0.161 0.839 31 H 0.048 0.952 32 H 0.121 0.879 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.002 0.998 36 H 0.002 0.998 37 H 0.080 0.920 38 H 0.102 0.898 39 H 0.084 0.916 40 H 0.103 0.897 41 H 0.089 0.911 42 H 0.100 0.900 43 H 0.105 0.895 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.076 -12.139 19.891 23.303 hybrid contribution 0.959 0.950 -0.799 1.568 sum 0.883 -11.189 19.092 22.147 Atomic orbital electron populations 1.21855 0.94059 1.01735 1.01351 1.20397 0.96249 0.94557 0.93415 1.21851 1.00333 0.96219 1.01721 1.21984 0.96296 0.98271 0.89052 1.60554 1.63477 1.07050 1.01416 1.21897 0.97347 0.97938 0.88252 1.22605 0.97333 0.84385 0.97923 1.87753 1.70081 1.25858 1.49204 1.19787 0.93113 0.89957 0.83482 1.21383 1.27868 0.98381 1.10879 0.91968 1.25979 0.95631 1.03546 0.94157 1.70074 1.36137 1.37174 1.13643 0.85175 0.78256 0.77033 0.78896 1.19292 1.19921 1.18792 1.22541 0.99416 0.96160 0.93702 1.23016 1.01574 0.96197 0.96817 1.22785 1.02257 0.96298 0.96234 1.23056 1.01115 0.96938 0.96539 0.92428 0.93255 0.92103 0.93359 0.93748 0.91719 0.96021 0.90402 0.83909 0.95237 0.87889 0.93447 0.93894 0.99777 0.99789 0.92033 0.89752 0.91609 0.89735 0.91127 0.89970 0.89497 0.91713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.80 7.46 71.98 0.54 -2.27 16 2 C -0.05 -0.95 0.50 -52.18 -0.03 -0.98 16 3 C -0.14 -3.33 7.96 71.98 0.57 -2.75 16 4 C 0.07 1.71 4.50 86.30 0.39 2.10 16 5 N -0.69 -20.55 5.61 -513.88 -2.88 -23.44 16 6 C 0.07 2.26 6.11 86.30 0.53 2.78 16 7 C 0.05 2.09 6.28 71.98 0.45 2.55 16 8 O -0.41 -20.22 9.85 -148.98 -1.47 -21.69 16 9 C 0.21 12.14 5.69 71.24 0.41 12.55 16 10 C -0.55 -33.01 9.43 25.60 0.24 -32.77 16 11 H 0.06 3.69 7.81 -2.91 -0.02 3.67 16 12 C 0.01 0.31 5.46 84.65 0.46 0.77 16 13 N -0.93 -56.65 13.29 21.45 0.28 -56.37 16 14 Si 0.98 44.72 29.54 68.60 2.03 46.74 16 15 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 16 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 17 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 18 C -0.10 -1.68 3.03 -10.27 -0.03 -1.71 16 19 C -0.14 -2.07 6.71 31.12 0.21 -1.86 16 20 C -0.14 -1.83 8.08 31.12 0.25 -1.58 16 21 C -0.14 -2.09 7.15 31.12 0.22 -1.87 16 22 H 0.06 1.10 6.43 -2.39 -0.02 1.08 16 23 H 0.05 1.28 7.42 -2.39 -0.02 1.26 16 24 H 0.06 1.16 6.00 -2.39 -0.01 1.14 16 25 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.04 1.21 6.86 -2.39 -0.02 1.19 16 27 H 0.06 1.33 7.94 -2.39 -0.02 1.31 16 28 H 0.02 0.52 8.14 -2.38 -0.02 0.50 16 29 H 0.08 1.67 7.61 -2.39 -0.02 1.65 16 30 H 0.34 11.72 6.46 -89.70 -0.58 11.14 16 31 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.10 2.51 8.14 -2.38 -0.02 2.49 16 33 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 34 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 35 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 36 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 37 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 38 H 0.08 1.45 8.14 -2.39 -0.02 1.44 16 39 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.08 1.30 6.02 -2.39 -0.01 1.29 16 41 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 42 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.09 1.33 5.72 -2.39 -0.01 1.32 16 44 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -64.33 340.39 2.54 -61.79 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: 0.37 Total: 18.01 kcal Atomic # 6 Polarization: -29.26 SS G_CDS: 4.21 Total: -25.04 kcal Atomic # 7 Polarization: -77.21 SS G_CDS: -2.60 Total: -79.81 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: -1.47 Total: -21.69 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Total: -64.33 2.54 -61.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385047215.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.729 kcal (2) G-P(sol) polarization free energy of solvation -64.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds