Wall clock time and date at job start Mon Mar 30 2020 07:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47124 * 2 1 4 4 H 1.09000 * 110.27451 * 304.36032 * 3 2 1 5 5 O 1.43650 * 110.31134 * 66.45287 * 3 2 1 6 6 C 1.43233 * 109.97542 * 143.44474 * 5 3 2 7 7 C 1.54382 * 107.66464 * 358.24175 * 6 5 3 8 8 C 1.54947 * 110.39537 * 182.21280 * 3 2 1 9 9 H 1.08999 * 111.12360 * 322.51237 * 8 3 2 10 10 C 1.52999 * 111.12322 * 86.63434 * 8 3 2 11 11 N 1.46909 * 109.46719 * 185.00056 * 10 8 3 12 12 C 1.46899 * 110.99290 * 180.02562 * 11 10 8 13 13 C 1.53005 * 109.46737 * 180.02562 * 12 11 10 14 14 C 1.53001 * 109.47101 * 180.02562 * 13 12 11 15 15 C 1.53004 * 109.46727 * 179.97438 * 14 13 12 16 16 C 1.50708 * 109.46716 * 179.97438 * 15 14 13 17 17 H 1.07997 * 120.00210 * 0.02562 * 16 15 14 18 18 C 1.37872 * 119.99705 * 180.02562 * 16 15 14 19 19 N 1.31517 * 120.00034 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00009 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.46623 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47038 * 119.99843 * 20 18 16 23 23 H 1.48491 * 109.47150 * 240.00142 * 20 18 16 24 24 H 1.09004 * 109.47742 * 300.00104 * 1 2 3 25 25 H 1.09003 * 109.46896 * 60.00546 * 1 2 3 26 26 H 1.09010 * 109.47281 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47302 * 239.99667 * 2 1 3 28 28 H 1.09009 * 109.46981 * 119.99913 * 2 1 3 29 29 H 1.09002 * 109.83312 * 117.80151 * 6 5 3 30 30 H 1.08996 * 109.82720 * 238.68562 * 6 5 3 31 31 H 1.08994 * 110.85092 * 96.87745 * 7 6 5 32 32 H 1.08999 * 110.85045 * 220.50231 * 7 6 5 33 33 H 1.08999 * 109.47200 * 305.00100 * 10 8 3 34 34 H 1.09003 * 109.46835 * 65.00725 * 10 8 3 35 35 H 1.00901 * 110.99855 * 303.95297 * 11 10 8 36 36 H 1.09004 * 109.47526 * 299.99307 * 12 11 10 37 37 H 1.08996 * 109.47580 * 60.00274 * 12 11 10 38 38 H 1.09003 * 109.47014 * 299.99740 * 13 12 11 39 39 H 1.08996 * 109.47134 * 59.99668 * 13 12 11 40 40 H 1.08997 * 109.46611 * 299.99500 * 14 13 12 41 41 H 1.08996 * 109.47416 * 59.99819 * 14 13 12 42 42 H 1.08997 * 109.47489 * 299.99357 * 15 14 13 43 43 H 1.09004 * 109.47057 * 60.00231 * 15 14 13 44 44 H 0.97001 * 119.99869 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6218 1.9909 -0.8441 5 8 1.6987 2.0920 1.2350 6 6 2.7549 2.9743 1.6319 7 6 3.8854 2.8512 0.5878 8 6 3.5882 1.4678 -0.0561 9 1 4.0160 0.6597 0.5372 10 6 4.0886 1.4114 -1.5008 11 7 5.5546 1.3166 -1.5078 12 6 6.0718 1.2609 -2.8816 13 6 7.5983 1.1622 -2.8482 14 6 8.1371 1.1048 -4.2791 15 6 9.6636 1.0068 -4.2455 16 6 10.1943 0.9497 -5.6549 17 1 9.5112 0.9806 -6.4908 18 6 11.5519 0.8579 -5.8771 19 7 12.3838 0.8207 -4.8591 20 14 12.2099 0.7877 -7.6240 21 1 11.0769 0.8471 -8.5823 22 1 13.1165 1.9403 -7.8581 23 1 12.9590 -0.4792 -7.8203 24 1 -0.3635 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8901 29 1 2.3883 4.0005 1.6607 30 1 3.1268 2.6869 2.6153 31 1 3.8168 3.6468 -0.1540 32 1 4.8622 2.8535 1.0715 33 1 3.6656 0.5385 -1.9980 34 1 3.7804 2.3146 -2.0276 35 1 5.9688 2.0815 -0.9965 36 1 5.6627 0.3871 -3.3888 37 1 5.7774 2.1631 -3.4176 38 1 8.0078 2.0358 -2.3409 39 1 7.8924 0.2598 -2.3123 40 1 7.7276 0.2315 -4.7866 41 1 7.8430 2.0075 -4.8146 42 1 10.0728 1.8804 -3.7381 43 1 9.9581 0.1042 -3.7099 44 1 13.3389 0.7557 -5.0154 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385174226.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:37 Heat of formation + Delta-G solvation = -88.016362 kcal Electronic energy + Delta-G solvation = -18578.427148 eV Core-core repulsion = 15721.966028 eV Total energy + Delta-G solvation = -2856.461121 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.05044 -36.83540 -34.53964 -33.85612 -32.79624 -31.52475 -29.20581 -27.96115 -25.32671 -23.73748 -23.40629 -21.51289 -21.03078 -20.74226 -19.94753 -17.16334 -16.29757 -16.10096 -15.79796 -15.21998 -14.65507 -14.52054 -14.36427 -14.09291 -13.66157 -13.36542 -13.29364 -13.07356 -12.43038 -12.24949 -11.99936 -11.77523 -11.64178 -11.46582 -11.13767 -11.08914 -11.05088 -10.96947 -10.73360 -10.55079 -10.45803 -10.41565 -9.75924 -9.63317 -9.25613 -8.98944 -8.44973 -8.32715 -5.97743 -3.99909 3.31786 3.39064 3.43330 3.52617 3.94433 4.19587 4.47431 4.53955 4.59365 4.80720 4.84745 4.93684 5.06172 5.09617 5.18066 5.37399 5.38552 5.41355 5.42890 5.48211 5.53476 5.56001 5.60543 5.72003 5.76393 5.85539 5.89144 6.00963 6.06143 6.14634 6.23891 6.50568 6.76238 6.82038 6.95084 7.01453 7.22062 7.36116 7.71523 7.87070 8.03448 8.46260 9.07873 9.64021 11.13662 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.047292 B = 0.002599 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.925461 B =10771.992115 C =11134.835221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C 0.086 3.914 4 H 0.069 0.931 5 O -0.380 6.380 6 C 0.052 3.948 7 C -0.156 4.156 8 C -0.117 4.117 9 H 0.097 0.903 10 C 0.070 3.930 11 N -0.690 5.690 12 C 0.059 3.941 13 C -0.116 4.116 14 C -0.109 4.109 15 C 0.020 3.980 16 C -0.519 4.519 17 H 0.054 0.946 18 C 0.055 3.945 19 N -0.896 5.896 20 Si 0.891 3.109 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 H 0.060 0.940 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.075 0.925 34 H 0.030 0.970 35 H 0.339 0.661 36 H 0.069 0.931 37 H 0.026 0.974 38 H 0.053 0.947 39 H 0.065 0.935 40 H 0.047 0.953 41 H 0.044 0.956 42 H 0.014 0.986 43 H 0.016 0.984 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.790 2.415 11.759 24.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C 0.028 3.972 4 H 0.087 0.913 5 O -0.299 6.299 6 C -0.024 4.024 7 C -0.193 4.193 8 C -0.136 4.136 9 H 0.116 0.884 10 C -0.059 4.059 11 N -0.321 5.321 12 C -0.070 4.070 13 C -0.154 4.154 14 C -0.147 4.147 15 C -0.017 4.017 16 C -0.558 4.558 17 H 0.073 0.927 18 C -0.146 4.146 19 N -0.536 5.536 20 Si 0.719 3.281 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.210 1.210 24 H 0.079 0.921 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.094 0.906 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.104 0.896 33 H 0.093 0.907 34 H 0.048 0.952 35 H 0.156 0.844 36 H 0.088 0.912 37 H 0.044 0.956 38 H 0.072 0.928 39 H 0.084 0.916 40 H 0.066 0.934 41 H 0.063 0.937 42 H 0.033 0.967 43 H 0.034 0.966 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -21.799 1.690 11.986 24.934 hybrid contribution 0.633 1.012 -1.329 1.787 sum -21.166 2.702 10.657 23.851 Atomic orbital electron populations 1.21717 0.95346 1.01491 1.02134 1.21676 0.96670 0.94707 1.02912 1.23005 0.93240 0.93745 0.87172 0.91311 1.88404 1.41842 1.59496 1.40194 1.23067 0.87420 0.94033 0.97910 1.23246 0.99885 0.97463 0.98752 1.22979 0.95007 0.98160 0.97442 0.88425 1.21837 0.89098 1.00529 0.94479 1.60520 1.04650 1.50858 1.16031 1.22086 0.96803 1.00097 0.87986 1.21640 0.92311 1.02010 0.99390 1.21589 0.99764 1.00064 0.93282 1.19101 0.88579 0.97125 0.96857 1.21328 0.91771 1.49909 0.92744 0.92727 1.25042 0.97211 0.95458 0.96890 1.69981 1.02667 1.50954 1.29973 0.86553 0.78934 0.77579 0.85040 1.19774 1.21046 1.21006 0.92135 0.92931 0.92787 0.90560 0.91162 0.91645 0.91346 0.90708 0.89599 0.90670 0.95217 0.84354 0.91217 0.95575 0.92791 0.91616 0.93426 0.93700 0.96744 0.96591 0.93102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.83 37.16 0.37 -0.79 16 2 C -0.12 -1.00 5.68 -26.74 -0.15 -1.15 16 3 C 0.09 0.77 2.91 -25.71 -0.07 0.70 16 4 H 0.07 0.61 8.03 -51.93 -0.42 0.19 16 5 O -0.38 -3.94 10.69 -35.23 -0.38 -4.31 16 6 C 0.05 0.43 7.79 37.88 0.30 0.73 16 7 C -0.16 -1.24 6.03 -24.70 -0.15 -1.39 16 8 C -0.12 -1.04 2.71 -88.29 -0.24 -1.28 16 9 H 0.10 0.95 8.06 -51.93 -0.42 0.53 16 10 C 0.07 0.69 5.19 -3.82 -0.02 0.67 16 11 N -0.69 -8.25 6.50 -113.77 -0.74 -8.99 16 12 C 0.06 0.82 5.68 -3.82 -0.02 0.80 16 13 C -0.12 -1.96 5.47 -26.73 -0.15 -2.11 16 14 C -0.11 -2.25 5.15 -26.73 -0.14 -2.39 16 15 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 16 C -0.52 -14.98 9.11 -34.44 -0.31 -15.29 16 17 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 18 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 19 N -0.90 -27.35 13.29 55.43 0.74 -26.61 16 20 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 21 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 24 H 0.06 0.51 7.91 -51.93 -0.41 0.10 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.37 8.14 -51.92 -0.42 -0.06 16 27 H 0.08 0.58 7.92 -51.93 -0.41 0.17 16 28 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.58 7.91 -51.93 -0.41 0.17 16 32 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.74 7.92 -51.93 -0.41 0.33 16 34 H 0.03 0.29 7.97 -51.93 -0.41 -0.12 16 35 H 0.34 3.80 8.27 -39.29 -0.32 3.48 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.03 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 351.34 15.07 5.29 5.29 Total: -1.00 -30.63 351.34 -9.61 -40.24 By element: Atomic # 1 Polarization: 5.79 SS G_CDS: -8.68 Total: -2.89 kcal Atomic # 6 Polarization: -18.77 SS G_CDS: -0.83 Total: -19.60 kcal Atomic # 7 Polarization: -35.60 SS G_CDS: 0.00 Total: -35.60 kcal Atomic # 8 Polarization: -3.94 SS G_CDS: -0.38 Total: -4.31 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.63 -9.61 -40.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385174226.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.777 kcal (2) G-P(sol) polarization free energy of solvation -30.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds