Wall clock time and date at job start Mon Mar 30 2020 07:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47124 * 2 1 4 4 H 1.09000 * 110.27451 * 304.36032 * 3 2 1 5 5 O 1.43650 * 110.31134 * 66.45287 * 3 2 1 6 6 C 1.43233 * 109.97542 * 143.44474 * 5 3 2 7 7 C 1.54382 * 107.66464 * 358.24175 * 6 5 3 8 8 C 1.54947 * 110.39537 * 182.21280 * 3 2 1 9 9 H 1.08999 * 111.12360 * 322.51237 * 8 3 2 10 10 C 1.52999 * 111.12322 * 86.63434 * 8 3 2 11 11 N 1.46909 * 109.46719 * 185.00056 * 10 8 3 12 12 C 1.46899 * 110.99290 * 180.02562 * 11 10 8 13 13 C 1.53005 * 109.46737 * 180.02562 * 12 11 10 14 14 C 1.53001 * 109.47101 * 180.02562 * 13 12 11 15 15 C 1.53004 * 109.46727 * 179.97438 * 14 13 12 16 16 C 1.50708 * 109.46716 * 179.97438 * 15 14 13 17 17 H 1.07997 * 120.00210 * 0.02562 * 16 15 14 18 18 C 1.37872 * 119.99705 * 180.02562 * 16 15 14 19 19 N 1.31517 * 120.00034 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00009 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.46623 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47038 * 119.99843 * 20 18 16 23 23 H 1.48491 * 109.47150 * 240.00142 * 20 18 16 24 24 H 1.09004 * 109.47742 * 300.00104 * 1 2 3 25 25 H 1.09003 * 109.46896 * 60.00546 * 1 2 3 26 26 H 1.09010 * 109.47281 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47302 * 239.99667 * 2 1 3 28 28 H 1.09009 * 109.46981 * 119.99913 * 2 1 3 29 29 H 1.09002 * 109.83312 * 117.80151 * 6 5 3 30 30 H 1.08996 * 109.82720 * 238.68562 * 6 5 3 31 31 H 1.08994 * 110.85092 * 96.87745 * 7 6 5 32 32 H 1.08999 * 110.85045 * 220.50231 * 7 6 5 33 33 H 1.08999 * 109.47200 * 305.00100 * 10 8 3 34 34 H 1.09003 * 109.46835 * 65.00725 * 10 8 3 35 35 H 1.00901 * 110.99855 * 303.95297 * 11 10 8 36 36 H 1.09004 * 109.47526 * 299.99307 * 12 11 10 37 37 H 1.08996 * 109.47580 * 60.00274 * 12 11 10 38 38 H 1.09003 * 109.47014 * 299.99740 * 13 12 11 39 39 H 1.08996 * 109.47134 * 59.99668 * 13 12 11 40 40 H 1.08997 * 109.46611 * 299.99500 * 14 13 12 41 41 H 1.08996 * 109.47416 * 59.99819 * 14 13 12 42 42 H 1.08997 * 109.47489 * 299.99357 * 15 14 13 43 43 H 1.09004 * 109.47057 * 60.00231 * 15 14 13 44 44 H 0.97001 * 119.99869 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6218 1.9909 -0.8441 5 8 1.6987 2.0920 1.2350 6 6 2.7549 2.9743 1.6319 7 6 3.8854 2.8512 0.5878 8 6 3.5882 1.4678 -0.0561 9 1 4.0160 0.6597 0.5372 10 6 4.0886 1.4114 -1.5008 11 7 5.5546 1.3166 -1.5078 12 6 6.0718 1.2609 -2.8816 13 6 7.5983 1.1622 -2.8482 14 6 8.1371 1.1048 -4.2791 15 6 9.6636 1.0068 -4.2455 16 6 10.1943 0.9497 -5.6549 17 1 9.5112 0.9806 -6.4908 18 6 11.5519 0.8579 -5.8771 19 7 12.3838 0.8207 -4.8591 20 14 12.2099 0.7877 -7.6240 21 1 11.0769 0.8471 -8.5823 22 1 13.1165 1.9403 -7.8581 23 1 12.9590 -0.4792 -7.8203 24 1 -0.3635 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8901 29 1 2.3883 4.0005 1.6607 30 1 3.1268 2.6869 2.6153 31 1 3.8168 3.6468 -0.1540 32 1 4.8622 2.8535 1.0715 33 1 3.6656 0.5385 -1.9980 34 1 3.7804 2.3146 -2.0276 35 1 5.9688 2.0815 -0.9965 36 1 5.6627 0.3871 -3.3888 37 1 5.7774 2.1631 -3.4176 38 1 8.0078 2.0358 -2.3409 39 1 7.8924 0.2598 -2.3123 40 1 7.7276 0.2315 -4.7866 41 1 7.8430 2.0075 -4.8146 42 1 10.0728 1.8804 -3.7381 43 1 9.9581 0.1042 -3.7099 44 1 13.3389 0.7557 -5.0154 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385174226.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:37 Heat of formation + Delta-G solvation = -106.529149 kcal Electronic energy + Delta-G solvation = -18579.229923 eV Core-core repulsion = 15721.966028 eV Total energy + Delta-G solvation = -2857.263895 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.75445 -37.94119 -36.10128 -34.66427 -34.29809 -32.83278 -30.30970 -29.19909 -26.72832 -25.02209 -24.13629 -22.89291 -21.91566 -21.68200 -21.30657 -18.45356 -17.88470 -16.97602 -16.78085 -16.52004 -15.92198 -15.77711 -15.48408 -14.85292 -14.62170 -14.43580 -14.26137 -13.96995 -13.93123 -13.58915 -13.40211 -12.93323 -12.85532 -12.63786 -12.41458 -12.26879 -12.22912 -12.09464 -11.84025 -11.75611 -11.67146 -11.44304 -11.35702 -11.28312 -10.94504 -10.56129 -10.44715 -9.39053 -8.20220 -6.31608 1.39596 1.39970 1.53483 2.40727 2.86332 3.06641 3.12589 3.51565 3.81776 3.89132 4.10324 4.17237 4.19490 4.20630 4.29114 4.39520 4.42828 4.51145 4.55838 4.65680 4.72822 4.78307 4.84965 4.86961 4.91342 4.91655 4.95181 5.09987 5.12017 5.20259 5.24868 5.27915 5.34183 5.36845 5.43277 5.55569 5.78306 5.87115 6.04659 6.11411 6.25811 6.44529 6.86373 7.37839 8.91889 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.047292 B = 0.002599 C = 0.002514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.925461 B =10771.992115 C =11134.835221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.123 4.123 3 C 0.086 3.914 4 H 0.072 0.928 5 O -0.399 6.399 6 C 0.048 3.952 7 C -0.152 4.152 8 C -0.111 4.111 9 H 0.088 0.912 10 C 0.074 3.926 11 N -0.695 5.695 12 C 0.071 3.929 13 C -0.106 4.106 14 C -0.097 4.097 15 C 0.022 3.978 16 C -0.543 4.543 17 H 0.060 0.940 18 C -0.004 4.004 19 N -0.935 5.935 20 Si 0.966 3.034 21 H -0.261 1.261 22 H -0.277 1.277 23 H -0.278 1.278 24 H 0.049 0.951 25 H 0.056 0.944 26 H 0.062 0.938 27 H 0.083 0.917 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.077 0.923 34 H 0.036 0.964 35 H 0.344 0.656 36 H 0.071 0.929 37 H 0.033 0.967 38 H 0.053 0.947 39 H 0.055 0.945 40 H 0.050 0.950 41 H 0.050 0.950 42 H -0.010 1.010 43 H -0.011 1.011 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.791 2.692 10.836 25.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.160 4.160 3 C 0.029 3.971 4 H 0.090 0.910 5 O -0.319 6.319 6 C -0.028 4.028 7 C -0.190 4.190 8 C -0.130 4.130 9 H 0.107 0.893 10 C -0.055 4.055 11 N -0.327 5.327 12 C -0.058 4.058 13 C -0.144 4.144 14 C -0.135 4.135 15 C -0.015 4.015 16 C -0.581 4.581 17 H 0.078 0.922 18 C -0.201 4.201 19 N -0.575 5.575 20 Si 0.791 3.209 21 H -0.185 1.185 22 H -0.203 1.203 23 H -0.203 1.203 24 H 0.068 0.932 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.102 0.898 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.097 0.903 32 H 0.109 0.891 33 H 0.095 0.905 34 H 0.054 0.946 35 H 0.162 0.838 36 H 0.090 0.910 37 H 0.052 0.948 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.008 0.992 43 H 0.007 0.993 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -22.819 1.971 11.072 25.440 hybrid contribution 0.948 0.929 -0.983 1.652 sum -21.872 2.899 10.089 24.260 Atomic orbital electron populations 1.21696 0.95003 1.01978 1.01799 1.21692 0.96991 0.94341 1.02973 1.23041 0.93143 0.94058 0.86875 0.91048 1.88386 1.42795 1.59991 1.40761 1.23186 0.87188 0.94253 0.98211 1.23236 1.00044 0.96954 0.98731 1.22867 0.94970 0.98432 0.96726 0.89319 1.21834 0.87593 1.00918 0.95163 1.60454 1.06007 1.51392 1.14822 1.21850 0.94147 1.00574 0.89269 1.21466 0.94808 1.01496 0.96614 1.21397 0.95725 1.00437 0.95957 1.19036 0.92522 0.94605 0.95359 1.21778 0.92453 1.49998 0.93900 0.92196 1.26031 0.97583 0.94809 1.01719 1.70113 1.03152 1.51687 1.32586 0.85378 0.78427 0.77823 0.79295 1.18523 1.20313 1.20324 0.93205 0.92483 0.91921 0.89805 0.91764 0.90740 0.90868 0.90274 0.89057 0.90498 0.94558 0.83819 0.91011 0.94840 0.92840 0.92662 0.93077 0.93105 0.99195 0.99277 0.92778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.83 71.98 0.71 -1.40 16 2 C -0.12 -1.87 5.68 30.59 0.17 -1.70 16 3 C 0.09 1.44 2.91 31.26 0.09 1.53 16 4 H 0.07 1.15 8.03 -2.39 -0.02 1.13 16 5 O -0.40 -7.87 10.69 -148.98 -1.59 -9.47 16 6 C 0.05 0.73 7.79 72.45 0.56 1.30 16 7 C -0.15 -2.17 6.03 31.91 0.19 -1.98 16 8 C -0.11 -1.80 2.71 -9.28 -0.03 -1.83 16 9 H 0.09 1.63 8.06 -2.39 -0.02 1.61 16 10 C 0.07 1.31 5.19 86.30 0.45 1.76 16 11 N -0.70 -15.40 6.50 -513.86 -3.34 -18.74 16 12 C 0.07 1.83 5.68 86.31 0.49 2.32 16 13 C -0.11 -3.53 5.47 30.60 0.17 -3.36 16 14 C -0.10 -3.98 5.15 30.60 0.16 -3.82 16 15 C 0.02 1.18 4.97 29.85 0.15 1.33 16 16 C -0.54 -31.52 9.11 25.60 0.23 -31.28 16 17 H 0.06 3.33 7.74 -2.91 -0.02 3.30 16 18 C 0.00 -0.24 5.46 84.65 0.46 0.23 16 19 N -0.93 -57.85 13.29 21.45 0.28 -57.56 16 20 Si 0.97 44.69 29.54 68.60 2.03 46.72 16 21 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 22 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 23 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 24 H 0.05 0.81 7.91 -2.38 -0.02 0.79 16 25 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 27 H 0.08 1.14 7.92 -2.39 -0.02 1.12 16 28 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 29 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.08 1.07 7.91 -2.39 -0.02 1.05 16 32 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.08 1.36 7.92 -2.39 -0.02 1.34 16 34 H 0.04 0.62 7.97 -2.39 -0.02 0.60 16 35 H 0.34 7.10 8.27 -89.69 -0.74 6.36 16 36 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 37 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 42 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 43 H -0.01 -0.65 8.14 -2.38 -0.02 -0.67 16 44 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -65.16 351.34 1.37 -63.79 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: 0.18 Total: 12.17 kcal Atomic # 6 Polarization: -40.73 SS G_CDS: 3.81 Total: -36.91 kcal Atomic # 7 Polarization: -73.25 SS G_CDS: -3.06 Total: -76.30 kcal Atomic # 8 Polarization: -7.87 SS G_CDS: -1.59 Total: -9.47 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -65.16 1.37 -63.79 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385174226.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.735 kcal (2) G-P(sol) polarization free energy of solvation -65.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds