Wall clock time and date at job start Mon Mar 30 2020 07:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.47337 * 2 1 4 4 H 1.09000 * 109.98783 * 53.91128 * 3 2 1 5 5 O 1.43745 * 109.87336 * 292.83098 * 3 2 1 6 6 C 1.44376 * 106.97266 * 214.06085 * 5 3 2 7 7 C 1.54990 * 103.49153 * 40.06270 * 6 5 3 8 8 C 1.54099 * 109.88016 * 175.00158 * 3 2 1 9 9 H 1.08997 * 110.59460 * 240.18436 * 8 3 2 10 10 C 1.52995 * 110.48746 * 2.77249 * 8 3 2 11 11 N 1.46902 * 109.47160 * 181.22012 * 10 8 3 12 12 C 1.46898 * 111.00157 * 179.97438 * 11 10 8 13 13 C 1.52997 * 109.47123 * 180.02562 * 12 11 10 14 14 C 1.53002 * 109.46978 * 179.97438 * 13 12 11 15 15 C 1.53005 * 109.47197 * 180.02562 * 14 13 12 16 16 C 1.50695 * 109.47088 * 180.02562 * 15 14 13 17 17 H 1.07995 * 120.00496 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99572 * 180.02562 * 16 15 14 19 19 N 1.31511 * 120.00327 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99951 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47297 * 59.99744 * 20 18 16 22 22 H 1.48503 * 109.47261 * 299.99924 * 20 18 16 23 23 H 1.48500 * 109.47454 * 179.97438 * 20 18 16 24 24 H 1.09004 * 109.46950 * 60.00138 * 1 2 3 25 25 H 1.08999 * 109.46806 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46672 * 300.00020 * 1 2 3 27 27 H 1.08999 * 109.47330 * 239.99676 * 2 1 3 28 28 H 1.09004 * 109.46950 * 119.99862 * 2 1 3 29 29 H 1.09009 * 110.62055 * 281.55785 * 6 5 3 30 30 H 1.09006 * 110.62074 * 158.56574 * 6 5 3 31 31 H 1.09003 * 110.91133 * 204.78000 * 7 6 5 32 32 H 1.09001 * 110.90906 * 81.17455 * 7 6 5 33 33 H 1.09005 * 109.47129 * 61.22175 * 10 8 3 34 34 H 1.09002 * 109.47639 * 301.22313 * 10 8 3 35 35 H 1.00899 * 110.99626 * 56.04855 * 11 10 8 36 36 H 1.09002 * 109.47032 * 60.00277 * 12 11 10 37 37 H 1.09001 * 109.47062 * 300.00401 * 12 11 10 38 38 H 1.09002 * 109.46777 * 60.00637 * 13 12 11 39 39 H 1.09001 * 109.47375 * 300.00082 * 13 12 11 40 40 H 1.09002 * 109.47097 * 60.00199 * 14 13 12 41 41 H 1.09001 * 109.47600 * 299.99959 * 14 13 12 42 42 H 1.09002 * 109.46935 * 60.00099 * 15 14 13 43 43 H 1.08998 * 109.47061 * 300.00893 * 15 14 13 44 44 H 0.97006 * 119.99995 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5955 1.9949 0.8278 5 8 1.7085 2.0781 -1.2459 6 6 2.7842 2.9908 -1.5529 7 6 4.0545 2.2040 -1.1413 8 6 3.5759 1.4553 0.1263 9 1 3.8823 1.9913 1.0245 10 6 4.1236 0.0269 0.1435 11 7 5.5845 0.0644 0.2937 12 6 6.1466 -1.2926 0.3149 13 6 7.6663 -1.2127 0.4729 14 6 8.2516 -2.6261 0.4957 15 6 9.7713 -2.5463 0.6543 16 6 10.3479 -3.9384 0.6761 17 1 9.6959 -4.7945 0.5854 18 6 11.7081 -4.1192 0.8118 19 7 12.5021 -3.0767 0.9227 20 14 12.4230 -5.8447 0.8381 21 1 12.0943 -6.5362 -0.4344 22 1 11.8450 -6.6027 1.9768 23 1 13.8979 -5.7672 0.9922 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 2.6916 3.9046 -0.9658 30 1 2.8021 3.2184 -2.6188 31 1 4.8737 2.8834 -0.9057 32 1 4.3464 1.5009 -1.9215 33 1 3.8672 -0.4719 -0.7912 34 1 3.6864 -0.5200 0.9789 35 1 5.8498 0.5783 1.1205 36 1 5.9042 -1.8009 -0.6183 37 1 5.7233 -1.8481 1.1518 38 1 7.9083 -0.7046 1.4064 39 1 8.0899 -0.6570 -0.3637 40 1 8.0096 -3.1347 -0.4376 41 1 7.8281 -3.1815 1.3325 42 1 10.0130 -2.0379 1.5877 43 1 10.1953 -1.9908 -0.1822 44 1 12.1310 -2.1806 0.9087 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385174230.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:40 Heat of formation + Delta-G solvation = -85.783224 kcal Electronic energy + Delta-G solvation = -18780.036864 eV Core-core repulsion = 15923.672579 eV Total energy + Delta-G solvation = -2856.364284 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.17332 -36.86011 -34.78562 -33.86742 -32.85653 -31.49224 -29.02568 -27.77091 -24.97677 -23.80367 -23.36555 -21.98060 -21.50654 -20.41715 -19.60400 -16.89870 -16.65022 -16.09974 -15.94254 -15.70016 -14.69426 -14.41362 -14.33671 -13.73989 -13.69972 -13.50775 -13.08674 -12.78971 -12.62379 -12.32977 -11.99660 -11.81933 -11.78004 -11.36206 -11.12729 -11.01847 -10.94238 -10.87375 -10.70351 -10.57012 -10.56473 -10.10106 -9.88218 -9.76087 -9.59549 -8.48131 -8.43311 -8.28983 -6.32707 -4.01159 3.45241 3.47559 3.61022 3.66283 3.96721 4.34301 4.40345 4.57661 4.68933 4.77377 4.86214 4.98470 5.06274 5.14870 5.21590 5.30263 5.34390 5.43571 5.45130 5.46060 5.54074 5.59264 5.65044 5.72984 5.81525 5.84712 5.91390 5.98067 6.04361 6.05718 6.15677 6.39947 6.67619 6.69952 6.82550 6.92811 7.10259 7.33667 7.46793 7.60318 8.27191 8.50574 8.92856 9.71327 11.08064 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.043737 B = 0.002740 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.030931 B =10218.053398 C =10663.636289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.127 4.127 3 C 0.083 3.917 4 H 0.066 0.934 5 O -0.373 6.373 6 C 0.042 3.958 7 C -0.136 4.136 8 C -0.118 4.118 9 H 0.080 0.920 10 C 0.066 3.934 11 N -0.691 5.691 12 C 0.061 3.939 13 C -0.116 4.116 14 C -0.102 4.102 15 C 0.008 3.992 16 C -0.602 4.602 17 H 0.047 0.953 18 C 0.012 3.988 19 N -0.915 5.915 20 Si 1.069 2.931 21 H -0.288 1.288 22 H -0.288 1.288 23 H -0.282 1.282 24 H 0.060 0.940 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.057 0.943 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.033 0.967 35 H 0.338 0.662 36 H 0.069 0.931 37 H 0.026 0.974 38 H 0.053 0.947 39 H 0.064 0.936 40 H 0.049 0.951 41 H 0.046 0.954 42 H 0.005 0.995 43 H 0.006 0.994 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.665 10.900 -1.640 25.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.165 4.165 3 C 0.024 3.976 4 H 0.084 0.916 5 O -0.293 6.293 6 C -0.035 4.035 7 C -0.173 4.173 8 C -0.137 4.137 9 H 0.099 0.901 10 C -0.063 4.063 11 N -0.322 5.322 12 C -0.068 4.068 13 C -0.154 4.154 14 C -0.140 4.140 15 C -0.029 4.029 16 C -0.640 4.640 17 H 0.066 0.934 18 C -0.191 4.191 19 N -0.551 5.551 20 Si 0.897 3.103 21 H -0.215 1.215 22 H -0.215 1.215 23 H -0.208 1.208 24 H 0.079 0.921 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.091 0.909 28 H 0.095 0.905 29 H 0.075 0.925 30 H 0.109 0.891 31 H 0.099 0.901 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.051 0.949 35 H 0.155 0.845 36 H 0.087 0.913 37 H 0.044 0.956 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.067 0.933 41 H 0.065 0.935 42 H 0.023 0.977 43 H 0.025 0.975 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -21.325 10.090 -2.317 23.705 hybrid contribution -1.518 0.645 0.946 1.901 sum -22.843 10.735 -1.371 25.277 Atomic orbital electron populations 1.21739 0.95462 1.01494 1.02060 1.21846 0.96560 0.95108 1.02954 1.22765 0.93462 0.94106 0.87249 0.91576 1.88876 1.43728 1.57236 1.39440 1.23603 0.86043 0.92620 1.01204 1.23057 0.97604 0.99317 0.97341 1.22573 0.94497 0.97082 0.99558 0.90111 1.22146 0.88022 0.95039 1.01124 1.60500 1.09251 1.16791 1.45620 1.22044 0.95978 0.88433 1.00358 1.21648 0.92832 0.99289 1.01636 1.21460 0.98616 0.93623 1.00325 1.19216 0.90440 0.97474 0.95764 1.22095 0.94754 0.92410 1.54784 0.93438 1.25866 0.93994 1.05367 0.93862 1.70778 1.38172 0.99464 1.46711 0.83553 0.76175 0.74094 0.76477 1.21459 1.21492 1.20765 0.92112 0.92799 0.93032 0.90858 0.90539 0.92489 0.89101 0.90125 0.89949 0.90541 0.94861 0.84488 0.91264 0.95571 0.92844 0.91716 0.93264 0.93518 0.97673 0.97529 0.92118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.83 37.16 0.37 -0.82 16 2 C -0.13 -1.07 4.47 -26.73 -0.12 -1.19 16 3 C 0.08 0.73 3.41 -26.16 -0.09 0.65 16 4 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 5 O -0.37 -3.92 10.84 -35.23 -0.38 -4.30 16 6 C 0.04 0.35 7.72 38.21 0.29 0.65 16 7 C -0.14 -1.21 6.52 -24.73 -0.16 -1.37 16 8 C -0.12 -1.04 3.23 -89.10 -0.29 -1.33 16 9 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 10 C 0.07 0.66 3.81 -3.82 -0.01 0.64 16 11 N -0.69 -8.22 6.31 -113.78 -0.72 -8.93 16 12 C 0.06 0.85 5.68 -3.83 -0.02 0.83 16 13 C -0.12 -1.98 5.47 -26.73 -0.15 -2.13 16 14 C -0.10 -2.15 5.15 -26.73 -0.14 -2.29 16 15 C 0.01 0.21 4.28 -27.88 -0.12 0.09 16 16 C -0.60 -17.71 9.11 -34.44 -0.31 -18.02 16 17 H 0.05 1.37 7.74 -52.49 -0.41 0.96 16 18 C 0.01 0.37 5.46 -17.82 -0.10 0.27 16 19 N -0.91 -28.74 13.65 55.43 0.76 -27.98 16 20 Si 1.07 25.80 29.90 -169.99 -5.08 20.72 16 21 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 22 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 24 H 0.06 0.53 7.91 -51.93 -0.41 0.12 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.67 7.05 -51.93 -0.37 0.30 16 28 H 0.08 0.59 6.48 -51.93 -0.34 0.26 16 29 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 30 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.84 7.83 -51.93 -0.41 0.44 16 33 H 0.08 0.82 6.98 -51.93 -0.36 0.46 16 34 H 0.03 0.32 6.51 -51.93 -0.34 -0.02 16 35 H 0.34 3.75 8.73 -39.29 -0.34 3.41 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 40 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.00 0.14 8.01 -51.93 -0.42 -0.28 16 43 H 0.01 0.18 8.01 -51.93 -0.42 -0.24 16 44 H 0.27 8.40 7.22 -40.82 -0.29 8.10 16 LS Contribution 344.50 15.07 5.19 5.19 Total: -1.00 -31.52 344.50 -9.47 -40.99 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -8.39 Total: -1.67 kcal Atomic # 6 Polarization: -23.17 SS G_CDS: -0.85 Total: -24.01 kcal Atomic # 7 Polarization: -36.96 SS G_CDS: 0.04 Total: -36.92 kcal Atomic # 8 Polarization: -3.92 SS G_CDS: -0.38 Total: -4.30 kcal Atomic # 14 Polarization: 25.80 SS G_CDS: -5.08 Total: 20.72 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.52 -9.47 -40.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385174230.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.793 kcal (2) G-P(sol) polarization free energy of solvation -31.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds