Wall clock time and date at job start Mon Mar 30 2020 07:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.47337 * 2 1 4 4 H 1.09000 * 109.98783 * 53.91128 * 3 2 1 5 5 O 1.43745 * 109.87336 * 292.83098 * 3 2 1 6 6 C 1.44376 * 106.97266 * 214.06085 * 5 3 2 7 7 C 1.54990 * 103.49153 * 40.06270 * 6 5 3 8 8 C 1.54099 * 109.88016 * 175.00158 * 3 2 1 9 9 H 1.08997 * 110.59460 * 240.18436 * 8 3 2 10 10 C 1.52995 * 110.48746 * 2.77249 * 8 3 2 11 11 N 1.46902 * 109.47160 * 181.22012 * 10 8 3 12 12 C 1.46898 * 111.00157 * 179.97438 * 11 10 8 13 13 C 1.52997 * 109.47123 * 180.02562 * 12 11 10 14 14 C 1.53002 * 109.46978 * 179.97438 * 13 12 11 15 15 C 1.53005 * 109.47197 * 180.02562 * 14 13 12 16 16 C 1.50695 * 109.47088 * 180.02562 * 15 14 13 17 17 H 1.07995 * 120.00496 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99572 * 180.02562 * 16 15 14 19 19 N 1.31511 * 120.00327 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99951 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47297 * 59.99744 * 20 18 16 22 22 H 1.48503 * 109.47261 * 299.99924 * 20 18 16 23 23 H 1.48500 * 109.47454 * 179.97438 * 20 18 16 24 24 H 1.09004 * 109.46950 * 60.00138 * 1 2 3 25 25 H 1.08999 * 109.46806 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46672 * 300.00020 * 1 2 3 27 27 H 1.08999 * 109.47330 * 239.99676 * 2 1 3 28 28 H 1.09004 * 109.46950 * 119.99862 * 2 1 3 29 29 H 1.09009 * 110.62055 * 281.55785 * 6 5 3 30 30 H 1.09006 * 110.62074 * 158.56574 * 6 5 3 31 31 H 1.09003 * 110.91133 * 204.78000 * 7 6 5 32 32 H 1.09001 * 110.90906 * 81.17455 * 7 6 5 33 33 H 1.09005 * 109.47129 * 61.22175 * 10 8 3 34 34 H 1.09002 * 109.47639 * 301.22313 * 10 8 3 35 35 H 1.00899 * 110.99626 * 56.04855 * 11 10 8 36 36 H 1.09002 * 109.47032 * 60.00277 * 12 11 10 37 37 H 1.09001 * 109.47062 * 300.00401 * 12 11 10 38 38 H 1.09002 * 109.46777 * 60.00637 * 13 12 11 39 39 H 1.09001 * 109.47375 * 300.00082 * 13 12 11 40 40 H 1.09002 * 109.47097 * 60.00199 * 14 13 12 41 41 H 1.09001 * 109.47600 * 299.99959 * 14 13 12 42 42 H 1.09002 * 109.46935 * 60.00099 * 15 14 13 43 43 H 1.08998 * 109.47061 * 300.00893 * 15 14 13 44 44 H 0.97006 * 119.99995 * 359.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5955 1.9949 0.8278 5 8 1.7085 2.0781 -1.2459 6 6 2.7842 2.9908 -1.5529 7 6 4.0545 2.2040 -1.1413 8 6 3.5759 1.4553 0.1263 9 1 3.8823 1.9913 1.0245 10 6 4.1236 0.0269 0.1435 11 7 5.5845 0.0644 0.2937 12 6 6.1466 -1.2926 0.3149 13 6 7.6663 -1.2127 0.4729 14 6 8.2516 -2.6261 0.4957 15 6 9.7713 -2.5463 0.6543 16 6 10.3479 -3.9384 0.6761 17 1 9.6959 -4.7945 0.5854 18 6 11.7081 -4.1192 0.8118 19 7 12.5021 -3.0767 0.9227 20 14 12.4230 -5.8447 0.8381 21 1 12.0943 -6.5362 -0.4344 22 1 11.8450 -6.6027 1.9768 23 1 13.8979 -5.7672 0.9922 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 2.6916 3.9046 -0.9658 30 1 2.8021 3.2184 -2.6188 31 1 4.8737 2.8834 -0.9057 32 1 4.3464 1.5009 -1.9215 33 1 3.8672 -0.4719 -0.7912 34 1 3.6864 -0.5200 0.9789 35 1 5.8498 0.5783 1.1205 36 1 5.9042 -1.8009 -0.6183 37 1 5.7233 -1.8481 1.1518 38 1 7.9083 -0.7046 1.4064 39 1 8.0899 -0.6570 -0.3637 40 1 8.0096 -3.1347 -0.4376 41 1 7.8281 -3.1815 1.3325 42 1 10.0130 -2.0379 1.5877 43 1 10.1953 -1.9908 -0.1822 44 1 12.1310 -2.1806 0.9087 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385174230.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:39 Heat of formation + Delta-G solvation = -105.346695 kcal Electronic energy + Delta-G solvation = -18780.885200 eV Core-core repulsion = 15923.672579 eV Total energy + Delta-G solvation = -2857.212620 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.88733 -38.00638 -36.38406 -34.89448 -34.18581 -32.76992 -30.10681 -29.03034 -26.44890 -24.85972 -24.47285 -23.04227 -22.63854 -22.00693 -20.42192 -18.88051 -17.61455 -17.02109 -16.75607 -16.49215 -15.86078 -15.74420 -15.60366 -15.22851 -14.90019 -14.48960 -14.26807 -14.07828 -13.88203 -13.55747 -13.07790 -12.88283 -12.66522 -12.49456 -12.48381 -12.29683 -12.28278 -11.96061 -11.86144 -11.77085 -11.63619 -11.46716 -11.44364 -11.38092 -10.64897 -10.55567 -10.55288 -9.37614 -8.70766 -6.41187 1.51446 1.60410 1.79924 2.56263 2.92989 3.07798 3.14242 3.63613 3.67841 3.93343 4.04084 4.08617 4.13160 4.21327 4.31685 4.42142 4.43422 4.43727 4.53574 4.57462 4.62755 4.71230 4.75640 4.81807 4.85786 4.94238 4.96072 5.05146 5.09033 5.11363 5.15424 5.19870 5.24747 5.27440 5.40606 5.46888 5.55854 5.99519 6.00431 6.02389 6.17684 6.43073 6.56712 7.41616 8.70125 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.043737 B = 0.002740 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.030931 B =10218.053398 C =10663.636289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.127 4.127 3 C 0.082 3.918 4 H 0.075 0.925 5 O -0.394 6.394 6 C 0.041 3.959 7 C -0.134 4.134 8 C -0.113 4.113 9 H 0.092 0.908 10 C 0.070 3.930 11 N -0.695 5.695 12 C 0.072 3.928 13 C -0.105 4.105 14 C -0.091 4.091 15 C 0.007 3.993 16 C -0.623 4.623 17 H 0.051 0.949 18 C -0.043 4.043 19 N -0.939 5.939 20 Si 1.119 2.881 21 H -0.268 1.268 22 H -0.267 1.267 23 H -0.282 1.282 24 H 0.048 0.952 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.085 0.915 29 H 0.070 0.930 30 H 0.097 0.903 31 H 0.085 0.915 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.043 0.957 35 H 0.344 0.656 36 H 0.067 0.933 37 H 0.033 0.967 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.049 0.951 41 H 0.050 0.950 42 H -0.013 1.013 43 H -0.014 1.014 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.870 10.406 -1.190 26.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.165 4.165 3 C 0.024 3.976 4 H 0.093 0.907 5 O -0.314 6.314 6 C -0.035 4.035 7 C -0.172 4.172 8 C -0.132 4.132 9 H 0.110 0.890 10 C -0.059 4.059 11 N -0.326 5.326 12 C -0.057 4.057 13 C -0.143 4.143 14 C -0.130 4.130 15 C -0.030 4.030 16 C -0.660 4.660 17 H 0.069 0.931 18 C -0.239 4.239 19 N -0.576 5.576 20 Si 0.939 3.061 21 H -0.193 1.193 22 H -0.192 1.192 23 H -0.208 1.208 24 H 0.067 0.933 25 H 0.079 0.921 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.104 0.896 29 H 0.088 0.912 30 H 0.116 0.884 31 H 0.103 0.897 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.061 0.939 35 H 0.162 0.838 36 H 0.085 0.915 37 H 0.052 0.948 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.006 0.994 43 H 0.004 0.996 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -22.564 9.618 -1.868 24.600 hybrid contribution -1.163 0.853 0.794 1.646 sum -23.727 10.471 -1.074 25.957 Atomic orbital electron populations 1.21717 0.95124 1.01873 1.01833 1.21853 0.96890 0.94885 1.02838 1.22839 0.93397 0.94365 0.87032 0.90682 1.88859 1.44575 1.57808 1.40171 1.23709 0.85179 0.92669 1.01979 1.23017 0.98049 0.99172 0.96976 1.22545 0.94486 0.96309 0.99903 0.89013 1.22130 0.86718 0.95972 1.01045 1.60424 1.10541 1.15508 1.46134 1.21800 0.93546 0.89756 1.00566 1.21464 0.95051 0.96388 1.01381 1.21296 0.94910 0.96367 1.00399 1.19195 0.94155 0.95770 0.93903 1.22568 0.95347 0.93768 1.54363 0.93091 1.27535 0.95007 1.08718 0.92675 1.70918 1.38564 0.99438 1.48718 0.82926 0.75466 0.69576 0.78093 1.19333 1.19237 1.20784 0.93286 0.92149 0.92273 0.91919 0.89633 0.91180 0.88432 0.89663 0.91546 0.91393 0.93897 0.83767 0.91452 0.94844 0.92640 0.92644 0.93243 0.93124 0.99440 0.99595 0.93592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.83 71.98 0.71 -1.44 16 2 C -0.13 -1.96 4.47 30.60 0.14 -1.82 16 3 C 0.08 1.32 3.41 30.97 0.11 1.43 16 4 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 5 O -0.39 -7.82 10.84 -148.98 -1.61 -9.44 16 6 C 0.04 0.63 7.72 72.66 0.56 1.19 16 7 C -0.13 -2.24 6.52 31.89 0.21 -2.03 16 8 C -0.11 -1.79 3.23 -9.81 -0.03 -1.83 16 9 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 10 C 0.07 1.28 3.81 86.30 0.33 1.61 16 11 N -0.69 -15.33 6.31 -513.89 -3.24 -18.57 16 12 C 0.07 1.91 5.68 86.30 0.49 2.40 16 13 C -0.10 -3.50 5.47 30.59 0.17 -3.33 16 14 C -0.09 -3.82 5.15 30.60 0.16 -3.66 16 15 C 0.01 0.37 4.28 29.85 0.13 0.50 16 16 C -0.62 -36.76 9.11 25.60 0.23 -36.52 16 17 H 0.05 2.91 7.74 -2.91 -0.02 2.88 16 18 C -0.04 -2.53 5.46 84.66 0.46 -2.07 16 19 N -0.94 -59.86 13.65 21.45 0.29 -59.57 16 20 Si 1.12 51.06 29.90 68.60 2.05 53.11 16 21 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 22 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 23 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 24 H 0.05 0.82 7.91 -2.38 -0.02 0.80 16 25 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.06 1.09 7.05 -2.39 -0.02 1.08 16 28 H 0.09 1.15 6.48 -2.38 -0.02 1.13 16 29 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 30 H 0.10 1.34 8.14 -2.38 -0.02 1.32 16 31 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.07 1.32 7.83 -2.39 -0.02 1.30 16 33 H 0.07 1.38 6.98 -2.38 -0.02 1.36 16 34 H 0.04 0.72 6.51 -2.39 -0.02 0.70 16 35 H 0.34 6.95 8.73 -89.69 -0.78 6.16 16 36 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 42 H -0.01 -0.72 8.01 -2.39 -0.02 -0.74 16 43 H -0.01 -0.82 8.01 -2.39 -0.02 -0.84 16 44 H 0.25 16.44 7.22 -92.70 -0.67 15.77 16 Total: -1.00 -67.33 344.50 1.40 -65.93 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: 0.25 Total: 14.11 kcal Atomic # 6 Polarization: -49.23 SS G_CDS: 3.65 Total: -45.57 kcal Atomic # 7 Polarization: -75.19 SS G_CDS: -2.95 Total: -78.14 kcal Atomic # 8 Polarization: -7.82 SS G_CDS: -1.61 Total: -9.44 kcal Atomic # 14 Polarization: 51.06 SS G_CDS: 2.05 Total: 53.11 kcal Total: -67.33 1.40 -65.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385174230.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.414 kcal (2) G-P(sol) polarization free energy of solvation -67.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds