Wall clock time and date at job start Mon Mar 30 2020 07:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52992 * 109.47317 * 2 1 4 4 H 1.09004 * 110.42156 * 307.31063 * 3 2 1 5 5 O 1.44425 * 110.37351 * 69.61716 * 3 2 1 6 6 C 1.44425 * 105.27677 * 159.34027 * 5 3 2 7 7 C 1.54474 * 104.80345 * 319.49270 * 6 5 3 8 8 C 1.54482 * 110.37264 * 184.99833 * 3 2 1 9 9 H 1.09001 * 110.62642 * 98.49084 * 8 3 2 10 10 C 1.52995 * 110.51235 * 335.83890 * 8 3 2 11 11 N 1.46890 * 109.47579 * 178.90229 * 10 8 3 12 12 C 1.46893 * 111.00452 * 179.97438 * 11 10 8 13 13 C 1.53001 * 109.47408 * 179.97438 * 12 11 10 14 14 C 1.53000 * 109.47355 * 179.97438 * 13 12 11 15 15 C 1.53001 * 109.47355 * 179.97438 * 14 13 12 16 16 C 1.50694 * 109.47168 * 180.02562 * 15 14 13 17 17 H 1.08000 * 120.00563 * 0.02562 * 16 15 14 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47353 * 269.99586 * 20 18 16 22 22 H 1.48501 * 109.47293 * 30.00037 * 20 18 16 23 23 H 1.48504 * 109.46680 * 149.99835 * 20 18 16 24 24 H 1.09001 * 109.47180 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46871 * 300.00025 * 1 2 3 26 26 H 1.09004 * 109.46661 * 59.99501 * 1 2 3 27 27 H 1.08998 * 109.46871 * 239.99975 * 2 1 3 28 28 H 1.08997 * 109.46839 * 120.00163 * 2 1 3 29 29 H 1.09000 * 110.37610 * 200.66037 * 6 5 3 30 30 H 1.09001 * 110.46280 * 78.37018 * 6 5 3 31 31 H 1.08998 * 110.51145 * 265.33031 * 7 6 5 32 32 H 1.08999 * 110.51427 * 142.62142 * 7 6 5 33 33 H 1.09001 * 109.47152 * 58.89820 * 10 8 3 34 34 H 1.09007 * 109.46558 * 298.90417 * 10 8 3 35 35 H 1.00900 * 111.00199 * 303.95747 * 11 10 8 36 36 H 1.08994 * 109.47037 * 59.99850 * 12 11 10 37 37 H 1.09003 * 109.47550 * 300.00002 * 12 11 10 38 38 H 1.09002 * 109.46926 * 60.00242 * 13 12 11 39 39 H 1.08992 * 109.47494 * 300.00236 * 13 12 11 40 40 H 1.09002 * 109.46807 * 60.00291 * 14 13 12 41 41 H 1.08998 * 109.47285 * 299.99893 * 14 13 12 42 42 H 1.09007 * 109.46922 * 59.99890 * 15 14 13 43 43 H 1.09003 * 109.46836 * 300.00646 * 15 14 13 44 44 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5831 2.0074 -0.8125 5 8 1.7632 2.0736 1.2691 6 6 2.6810 3.1858 1.3493 7 6 4.0108 2.6418 0.7819 8 6 3.5796 1.4685 -0.1262 9 1 3.8771 1.6548 -1.1581 10 6 4.1809 0.1538 0.3747 11 7 5.6411 0.1929 0.2202 12 6 6.2541 -1.0556 0.6926 13 6 7.7719 -0.9775 0.5154 14 6 8.4104 -2.2777 1.0080 15 6 9.9281 -2.1998 0.8303 16 6 10.5570 -3.4807 1.3149 17 1 9.9363 -4.2714 1.7097 18 6 11.9249 -3.6431 1.2542 19 7 12.6807 -2.6805 0.7729 20 14 12.7044 -5.2306 1.8555 21 1 13.0329 -5.1053 3.2983 22 1 11.7533 -6.3542 1.6601 23 1 13.9469 -5.4943 1.0861 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 2.8100 3.4975 2.3858 30 1 2.3233 4.0194 0.7449 31 1 4.6524 2.2853 1.5876 32 1 4.5195 3.4092 0.1985 33 1 3.7762 -0.6753 -0.2058 34 1 3.9302 0.0173 1.4267 35 1 5.8986 0.3832 -0.7367 36 1 5.8639 -1.8933 0.1146 37 1 6.0180 -1.2002 1.7468 38 1 8.1624 -0.1397 1.0931 39 1 8.0077 -0.8331 -0.5388 40 1 8.0199 -3.1157 0.4306 41 1 8.1747 -2.4216 2.0624 42 1 10.3190 -1.3616 1.4073 43 1 10.1635 -2.0561 -0.2243 44 1 13.6430 -2.7946 0.7305 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385174232.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:43 Heat of formation + Delta-G solvation = -83.322299 kcal Electronic energy + Delta-G solvation = -18754.853521 eV Core-core repulsion = 15898.595951 eV Total energy + Delta-G solvation = -2856.257571 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.10317 -36.73183 -34.54536 -33.81753 -32.69681 -31.47634 -29.06896 -27.91733 -25.22590 -23.78543 -23.45867 -21.71971 -21.36338 -20.19800 -19.67226 -16.79327 -16.27173 -16.01976 -15.85996 -15.55832 -14.75382 -14.44667 -14.25342 -14.09678 -13.80637 -13.39130 -12.91098 -12.64360 -12.41369 -12.24363 -11.83082 -11.74265 -11.60872 -11.49351 -11.18740 -11.06920 -10.94835 -10.82563 -10.64394 -10.51523 -10.45804 -10.40272 -9.92722 -9.61203 -9.23678 -8.98528 -8.36310 -8.31030 -5.96603 -3.98722 3.33661 3.39580 3.43120 3.64609 4.08737 4.36492 4.45625 4.49271 4.77701 4.82515 4.87476 5.00335 5.05373 5.21873 5.22748 5.38052 5.39186 5.41740 5.47636 5.54711 5.58454 5.61676 5.69822 5.76182 5.87304 5.90129 5.93186 6.02917 6.06719 6.17318 6.27461 6.52990 6.65632 6.84408 6.97934 7.05513 7.24740 7.42310 7.72565 7.88560 8.04686 8.47612 9.08869 9.65039 11.14801 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.042639 B = 0.002744 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.515299 B =10200.275881 C =10597.009180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C 0.080 3.920 4 H 0.067 0.933 5 O -0.371 6.371 6 C 0.042 3.958 7 C -0.141 4.141 8 C -0.116 4.116 9 H 0.081 0.919 10 C 0.066 3.934 11 N -0.691 5.691 12 C 0.060 3.940 13 C -0.115 4.115 14 C -0.109 4.109 15 C 0.021 3.979 16 C -0.520 4.520 17 H 0.054 0.946 18 C 0.055 3.945 19 N -0.896 5.896 20 Si 0.891 3.109 21 H -0.280 1.280 22 H -0.274 1.274 23 H -0.287 1.287 24 H 0.054 0.946 25 H 0.060 0.940 26 H 0.051 0.949 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.055 0.945 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.033 0.967 34 H 0.075 0.925 35 H 0.338 0.662 36 H 0.025 0.975 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.053 0.947 40 H 0.044 0.956 41 H 0.047 0.953 42 H 0.015 0.985 43 H 0.014 0.986 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.906 10.188 -2.930 25.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C 0.022 3.978 4 H 0.085 0.915 5 O -0.290 6.290 6 C -0.035 4.035 7 C -0.179 4.179 8 C -0.135 4.135 9 H 0.099 0.901 10 C -0.063 4.063 11 N -0.322 5.322 12 C -0.068 4.068 13 C -0.153 4.153 14 C -0.147 4.147 15 C -0.016 4.016 16 C -0.558 4.558 17 H 0.072 0.928 18 C -0.146 4.146 19 N -0.536 5.536 20 Si 0.719 3.281 21 H -0.207 1.207 22 H -0.199 1.199 23 H -0.212 1.212 24 H 0.073 0.927 25 H 0.079 0.921 26 H 0.070 0.930 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.108 0.892 30 H 0.073 0.927 31 H 0.106 0.894 32 H 0.092 0.908 33 H 0.051 0.949 34 H 0.093 0.907 35 H 0.155 0.845 36 H 0.043 0.957 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.065 0.935 42 H 0.034 0.966 43 H 0.032 0.968 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -22.784 10.487 -2.209 25.179 hybrid contribution 0.518 -1.327 -0.605 1.548 sum -22.266 9.160 -2.814 24.241 Atomic orbital electron populations 1.21751 0.95415 1.01587 1.02073 1.21675 0.96474 0.94704 1.02965 1.23038 0.93556 0.94345 0.86884 0.91468 1.89127 1.58676 1.43904 1.37284 1.23436 0.88729 0.89534 1.01787 1.22910 0.97645 0.97173 1.00155 1.22553 0.94707 0.96063 1.00216 0.90092 1.22064 0.87956 0.95021 1.01258 1.60471 1.07953 1.36402 1.27361 1.22059 0.95793 0.88914 1.00074 1.21632 0.92439 1.00045 1.01183 1.21590 0.99237 0.94459 0.99434 1.19091 0.88606 0.96913 0.96988 1.21297 0.91862 1.01516 1.41152 0.92778 1.25040 0.97503 0.96549 0.95476 1.69972 1.04870 1.32500 1.46260 0.86608 0.78795 0.83897 0.78781 1.20665 1.19918 1.21241 0.92716 0.92100 0.93005 0.90677 0.90670 0.89243 0.92716 0.89365 0.90779 0.94912 0.90703 0.84495 0.95650 0.91334 0.91692 0.92800 0.93709 0.93451 0.96622 0.96757 0.93055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.85 37.16 0.37 -0.79 16 2 C -0.12 -1.00 4.35 -26.73 -0.12 -1.12 16 3 C 0.08 0.71 3.16 -25.96 -0.08 0.63 16 4 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 5 O -0.37 -3.97 11.13 -35.23 -0.39 -4.36 16 6 C 0.04 0.36 7.63 37.93 0.29 0.65 16 7 C -0.14 -1.28 6.56 -25.17 -0.17 -1.45 16 8 C -0.12 -1.05 3.22 -89.05 -0.29 -1.33 16 9 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 10 C 0.07 0.69 3.70 -3.83 -0.01 0.68 16 11 N -0.69 -8.42 6.24 -113.79 -0.71 -9.13 16 12 C 0.06 0.86 5.69 -3.83 -0.02 0.83 16 13 C -0.12 -1.98 5.47 -26.73 -0.15 -2.13 16 14 C -0.11 -2.28 5.15 -26.73 -0.14 -2.42 16 15 C 0.02 0.56 4.97 -27.89 -0.14 0.42 16 16 C -0.52 -15.09 9.11 -34.44 -0.31 -15.40 16 17 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.90 -27.47 13.29 55.43 0.74 -26.73 16 20 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 25 H 0.06 0.52 8.01 -51.93 -0.42 0.10 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.07 0.56 7.46 -51.93 -0.39 0.17 16 28 H 0.07 0.69 7.05 -51.93 -0.37 0.32 16 29 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.09 0.94 7.67 -51.93 -0.40 0.54 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.03 0.33 6.52 -51.93 -0.34 -0.01 16 34 H 0.07 0.87 7.83 -51.92 -0.41 0.46 16 35 H 0.34 3.83 8.73 -39.29 -0.34 3.49 16 36 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 40 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 43 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 347.31 15.07 5.23 5.23 Total: -1.00 -30.73 347.31 -9.56 -40.28 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -8.54 Total: -2.37 kcal Atomic # 6 Polarization: -19.04 SS G_CDS: -0.86 Total: -19.90 kcal Atomic # 7 Polarization: -35.88 SS G_CDS: 0.03 Total: -35.86 kcal Atomic # 8 Polarization: -3.97 SS G_CDS: -0.39 Total: -4.36 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.73 -9.56 -40.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385174232.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.038 kcal (2) G-P(sol) polarization free energy of solvation -30.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds