Wall clock time and date at job start Mon Mar 30 2020 07:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52992 * 109.47317 * 2 1 4 4 H 1.09004 * 110.42156 * 307.31063 * 3 2 1 5 5 O 1.44425 * 110.37351 * 69.61716 * 3 2 1 6 6 C 1.44425 * 105.27677 * 159.34027 * 5 3 2 7 7 C 1.54474 * 104.80345 * 319.49270 * 6 5 3 8 8 C 1.54482 * 110.37264 * 184.99833 * 3 2 1 9 9 H 1.09001 * 110.62642 * 98.49084 * 8 3 2 10 10 C 1.52995 * 110.51235 * 335.83890 * 8 3 2 11 11 N 1.46890 * 109.47579 * 178.90229 * 10 8 3 12 12 C 1.46893 * 111.00452 * 179.97438 * 11 10 8 13 13 C 1.53001 * 109.47408 * 179.97438 * 12 11 10 14 14 C 1.53000 * 109.47355 * 179.97438 * 13 12 11 15 15 C 1.53001 * 109.47355 * 179.97438 * 14 13 12 16 16 C 1.50694 * 109.47168 * 180.02562 * 15 14 13 17 17 H 1.08000 * 120.00563 * 0.02562 * 16 15 14 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47353 * 269.99586 * 20 18 16 22 22 H 1.48501 * 109.47293 * 30.00037 * 20 18 16 23 23 H 1.48504 * 109.46680 * 149.99835 * 20 18 16 24 24 H 1.09001 * 109.47180 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46871 * 300.00025 * 1 2 3 26 26 H 1.09004 * 109.46661 * 59.99501 * 1 2 3 27 27 H 1.08998 * 109.46871 * 239.99975 * 2 1 3 28 28 H 1.08997 * 109.46839 * 120.00163 * 2 1 3 29 29 H 1.09000 * 110.37610 * 200.66037 * 6 5 3 30 30 H 1.09001 * 110.46280 * 78.37018 * 6 5 3 31 31 H 1.08998 * 110.51145 * 265.33031 * 7 6 5 32 32 H 1.08999 * 110.51427 * 142.62142 * 7 6 5 33 33 H 1.09001 * 109.47152 * 58.89820 * 10 8 3 34 34 H 1.09007 * 109.46558 * 298.90417 * 10 8 3 35 35 H 1.00900 * 111.00199 * 303.95747 * 11 10 8 36 36 H 1.08994 * 109.47037 * 59.99850 * 12 11 10 37 37 H 1.09003 * 109.47550 * 300.00002 * 12 11 10 38 38 H 1.09002 * 109.46926 * 60.00242 * 13 12 11 39 39 H 1.08992 * 109.47494 * 300.00236 * 13 12 11 40 40 H 1.09002 * 109.46807 * 60.00291 * 14 13 12 41 41 H 1.08998 * 109.47285 * 299.99893 * 14 13 12 42 42 H 1.09007 * 109.46922 * 59.99890 * 15 14 13 43 43 H 1.09003 * 109.46836 * 300.00646 * 15 14 13 44 44 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5831 2.0074 -0.8125 5 8 1.7632 2.0736 1.2691 6 6 2.6810 3.1858 1.3493 7 6 4.0108 2.6418 0.7819 8 6 3.5796 1.4685 -0.1262 9 1 3.8771 1.6548 -1.1581 10 6 4.1809 0.1538 0.3747 11 7 5.6411 0.1929 0.2202 12 6 6.2541 -1.0556 0.6926 13 6 7.7719 -0.9775 0.5154 14 6 8.4104 -2.2777 1.0080 15 6 9.9281 -2.1998 0.8303 16 6 10.5570 -3.4807 1.3149 17 1 9.9363 -4.2714 1.7097 18 6 11.9249 -3.6431 1.2542 19 7 12.6807 -2.6805 0.7729 20 14 12.7044 -5.2306 1.8555 21 1 13.0329 -5.1053 3.2983 22 1 11.7533 -6.3542 1.6601 23 1 13.9469 -5.4943 1.0861 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 2.8100 3.4975 2.3858 30 1 2.3233 4.0194 0.7449 31 1 4.6524 2.2853 1.5876 32 1 4.5195 3.4092 0.1985 33 1 3.7762 -0.6753 -0.2058 34 1 3.9302 0.0173 1.4267 35 1 5.8986 0.3832 -0.7367 36 1 5.8639 -1.8933 0.1146 37 1 6.0180 -1.2002 1.7468 38 1 8.1624 -0.1397 1.0931 39 1 8.0077 -0.8331 -0.5388 40 1 8.0199 -3.1157 0.4306 41 1 8.1747 -2.4216 2.0624 42 1 10.3190 -1.3616 1.4073 43 1 10.1635 -2.0561 -0.2243 44 1 13.6430 -2.7946 0.7305 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385174232.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:42 Heat of formation + Delta-G solvation = -102.200038 kcal Electronic energy + Delta-G solvation = -18755.672122 eV Core-core repulsion = 15898.595951 eV Total energy + Delta-G solvation = -2857.076171 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.82582 -37.88494 -36.08040 -34.74848 -34.18137 -32.77379 -30.25402 -29.11509 -26.69859 -24.88556 -24.40554 -22.83452 -22.38141 -21.80987 -20.57233 -18.43479 -17.51383 -17.06024 -16.59081 -16.52661 -16.42995 -15.71526 -15.53981 -15.07476 -14.52170 -14.40933 -14.15168 -13.98183 -13.76625 -13.39963 -13.17734 -12.99568 -12.83083 -12.47462 -12.43081 -12.34023 -12.25020 -12.11704 -11.82091 -11.71429 -11.55501 -11.37140 -11.35605 -11.29047 -10.97609 -10.61258 -10.55782 -9.33175 -8.20393 -6.31883 1.39254 1.41025 1.52147 2.40615 2.94657 3.12297 3.19292 3.67561 3.72213 3.99467 4.13873 4.16061 4.20695 4.23158 4.34867 4.42316 4.50904 4.52582 4.58367 4.65231 4.67960 4.81887 4.84267 4.87965 4.92751 4.94592 5.02696 5.10560 5.17946 5.23965 5.24784 5.27991 5.31911 5.35839 5.41661 5.54899 5.77813 5.86590 5.97444 6.08692 6.25645 6.49030 6.85775 7.37450 8.91567 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.042639 B = 0.002744 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.515299 B =10200.275881 C =10597.009180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C 0.080 3.920 4 H 0.080 0.920 5 O -0.393 6.393 6 C 0.040 3.960 7 C -0.140 4.140 8 C -0.113 4.113 9 H 0.094 0.906 10 C 0.071 3.929 11 N -0.695 5.695 12 C 0.072 3.928 13 C -0.104 4.104 14 C -0.097 4.097 15 C 0.023 3.977 16 C -0.546 4.546 17 H 0.059 0.941 18 C -0.003 4.003 19 N -0.935 5.935 20 Si 0.966 3.034 21 H -0.272 1.272 22 H -0.263 1.263 23 H -0.281 1.281 24 H 0.060 0.940 25 H 0.047 0.953 26 H 0.060 0.940 27 H 0.086 0.914 28 H 0.062 0.938 29 H 0.092 0.908 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.042 0.958 34 H 0.061 0.939 35 H 0.345 0.655 36 H 0.033 0.967 37 H 0.065 0.935 38 H 0.054 0.946 39 H 0.055 0.945 40 H 0.050 0.950 41 H 0.049 0.951 42 H -0.012 1.012 43 H -0.010 1.010 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.983 9.591 -3.307 26.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.159 4.159 3 C 0.022 3.978 4 H 0.097 0.903 5 O -0.313 6.313 6 C -0.036 4.036 7 C -0.177 4.177 8 C -0.132 4.132 9 H 0.112 0.888 10 C -0.058 4.058 11 N -0.326 5.326 12 C -0.057 4.057 13 C -0.142 4.142 14 C -0.136 4.136 15 C -0.014 4.014 16 C -0.583 4.583 17 H 0.078 0.922 18 C -0.201 4.201 19 N -0.575 5.575 20 Si 0.791 3.209 21 H -0.197 1.197 22 H -0.187 1.187 23 H -0.206 1.206 24 H 0.079 0.921 25 H 0.066 0.934 26 H 0.079 0.921 27 H 0.105 0.895 28 H 0.081 0.919 29 H 0.110 0.890 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.102 0.898 33 H 0.060 0.940 34 H 0.079 0.921 35 H 0.163 0.837 36 H 0.051 0.949 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.007 0.993 43 H 0.009 0.991 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -23.882 9.897 -2.587 25.981 hybrid contribution 0.855 -1.092 -0.496 1.473 sum -23.027 8.806 -3.084 24.845 Atomic orbital electron populations 1.21726 0.94991 1.01990 1.01885 1.21692 0.96886 0.94414 1.02883 1.23134 0.93345 0.94708 0.86618 0.90251 1.89109 1.59258 1.44652 1.38276 1.23537 0.88215 0.89491 1.02386 1.22873 0.97641 0.97522 0.99710 1.22539 0.94837 0.95060 1.00749 0.88789 1.22028 0.86735 0.96313 1.00677 1.60390 1.09128 1.35188 1.27930 1.21811 0.93468 0.90180 1.00222 1.21452 0.94539 0.97459 1.00783 1.21402 0.95518 0.96760 0.99884 1.19020 0.92410 0.95222 0.94754 1.21754 0.92651 1.02496 1.41445 0.92233 1.26029 0.98165 1.00442 0.95427 1.70106 1.05340 1.34818 1.47242 0.85430 0.77855 0.79252 0.78410 1.19734 1.18675 1.20621 0.92055 0.93355 0.92083 0.89530 0.91909 0.88957 0.91188 0.91287 0.89795 0.93989 0.92096 0.83721 0.94886 0.91622 0.92746 0.92662 0.93108 0.93253 0.99314 0.99130 0.92750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.85 71.99 0.71 -1.36 16 2 C -0.12 -1.82 4.35 30.59 0.13 -1.69 16 3 C 0.08 1.28 3.16 31.10 0.10 1.38 16 4 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 5 O -0.39 -8.00 11.13 -148.98 -1.66 -9.66 16 6 C 0.04 0.65 7.63 72.48 0.55 1.20 16 7 C -0.14 -2.36 6.56 31.61 0.21 -2.16 16 8 C -0.11 -1.83 3.22 -9.78 -0.03 -1.86 16 9 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 10 C 0.07 1.38 3.70 86.30 0.32 1.70 16 11 N -0.69 -15.96 6.24 -513.93 -3.21 -19.17 16 12 C 0.07 1.96 5.69 86.30 0.49 2.45 16 13 C -0.10 -3.55 5.47 30.59 0.17 -3.38 16 14 C -0.10 -4.08 5.15 30.59 0.16 -3.92 16 15 C 0.02 1.25 4.97 29.85 0.15 1.40 16 16 C -0.55 -31.90 9.11 25.60 0.23 -31.67 16 17 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 18 C 0.00 -0.19 5.46 84.66 0.46 0.28 16 19 N -0.93 -58.09 13.29 21.45 0.28 -57.80 16 20 Si 0.97 44.93 29.54 68.60 2.03 46.95 16 21 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 22 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 23 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 24 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.05 0.79 8.01 -2.39 -0.02 0.77 16 26 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 27 H 0.09 1.09 7.46 -2.39 -0.02 1.08 16 28 H 0.06 1.10 7.05 -2.39 -0.02 1.08 16 29 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.07 1.44 7.67 -2.39 -0.02 1.42 16 32 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.04 0.75 6.52 -2.39 -0.02 0.74 16 34 H 0.06 1.37 7.83 -2.38 -0.02 1.35 16 35 H 0.34 7.20 8.73 -89.69 -0.78 6.42 16 36 H 0.03 0.85 8.14 -2.39 -0.02 0.84 16 37 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 42 H -0.01 -0.68 8.14 -2.38 -0.02 -0.70 16 43 H -0.01 -0.57 8.14 -2.39 -0.02 -0.58 16 44 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -65.78 347.31 1.24 -64.54 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: 0.15 Total: 12.76 kcal Atomic # 6 Polarization: -41.27 SS G_CDS: 3.65 Total: -37.62 kcal Atomic # 7 Polarization: -74.05 SS G_CDS: -2.92 Total: -76.97 kcal Atomic # 8 Polarization: -8.00 SS G_CDS: -1.66 Total: -9.66 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.95 kcal Total: -65.78 1.24 -64.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385174232.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.657 kcal (2) G-P(sol) polarization free energy of solvation -65.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds