Wall clock time and date at job start Mon Mar 30 2020 07:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46626 * 2 1 4 4 H 1.08997 * 109.86846 * 54.29633 * 3 2 1 5 5 O 1.43741 * 109.87614 * 293.28782 * 3 2 1 6 6 C 1.44582 * 106.86784 * 214.17101 * 5 3 2 7 7 C 1.55000 * 103.58457 * 39.88500 * 6 5 3 8 8 C 1.54101 * 109.87562 * 175.30315 * 3 2 1 9 9 H 1.08999 * 110.48871 * 2.77635 * 8 3 2 10 10 C 1.53002 * 110.48937 * 240.26218 * 8 3 2 11 11 N 1.46891 * 109.47226 * 175.00084 * 10 8 3 12 12 C 1.46903 * 111.00180 * 180.02562 * 11 10 8 13 13 C 1.52992 * 109.47545 * 179.97438 * 12 11 10 14 14 C 1.52996 * 109.47595 * 179.97438 * 13 12 11 15 15 C 1.53002 * 109.47514 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.46936 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00619 * 0.02562 * 16 15 14 18 18 C 1.37885 * 119.99600 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99515 * 180.02562 * 18 16 15 20 20 Si 1.86794 * 119.99981 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47334 * 90.00017 * 20 18 16 22 22 H 1.48502 * 109.47043 * 209.99985 * 20 18 16 23 23 H 1.48500 * 109.47168 * 329.99436 * 20 18 16 24 24 H 1.09000 * 109.47160 * 60.00369 * 1 2 3 25 25 H 1.09002 * 109.46719 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47839 * 299.99931 * 1 2 3 27 27 H 1.08993 * 109.47839 * 240.00069 * 2 1 3 28 28 H 1.09000 * 109.47160 * 119.99631 * 2 1 3 29 29 H 1.08993 * 110.50764 * 281.38464 * 6 5 3 30 30 H 1.09004 * 110.63949 * 158.44394 * 6 5 3 31 31 H 1.08997 * 110.90730 * 204.85632 * 7 6 5 32 32 H 1.08997 * 110.90851 * 81.25228 * 7 6 5 33 33 H 1.09004 * 109.47119 * 295.00251 * 10 8 3 34 34 H 1.09006 * 109.47035 * 54.99893 * 10 8 3 35 35 H 1.00899 * 111.00140 * 303.95262 * 11 10 8 36 36 H 1.09005 * 109.47213 * 300.00111 * 12 11 10 37 37 H 1.08998 * 109.46883 * 59.99741 * 12 11 10 38 38 H 1.08997 * 109.47272 * 300.00264 * 13 12 11 39 39 H 1.09006 * 109.47025 * 59.99719 * 13 12 11 40 40 H 1.09005 * 109.47298 * 300.00214 * 14 13 12 41 41 H 1.09006 * 109.47054 * 59.99871 * 14 13 12 42 42 H 1.08991 * 109.46940 * 300.00352 * 15 14 13 43 43 H 1.09004 * 109.46525 * 60.00067 * 15 14 13 44 44 H 0.97001 * 119.99737 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5993 1.9912 0.8324 5 8 1.6989 2.0815 -1.2417 6 6 2.7762 2.9938 -1.5538 7 6 4.0487 2.2063 -1.1500 8 6 3.5763 1.4552 0.1187 9 1 3.9666 0.4376 0.1271 10 6 4.0098 2.2042 1.3804 11 7 5.4669 2.1005 1.5351 12 6 5.9203 2.8092 2.7394 13 6 7.4393 2.6785 2.8666 14 6 7.9116 3.4171 4.1205 15 6 9.4306 3.2858 4.2481 16 6 9.8957 4.0139 5.4828 17 1 9.1796 4.5193 6.1138 18 6 11.2356 4.0339 5.8076 19 7 11.6414 4.6688 6.8855 20 14 12.4742 3.1592 4.7168 21 1 12.9671 4.0973 3.6765 22 1 13.6165 2.6905 5.5420 23 1 11.8238 1.9942 4.0648 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.6865 3.9064 -0.9646 30 1 2.7888 3.2232 -2.6193 31 1 4.8689 2.8853 -0.9172 32 1 4.3367 1.5046 -1.9328 33 1 3.7272 3.2535 1.2952 34 1 3.5200 1.7655 2.2498 35 1 5.7610 1.1355 1.5516 36 1 5.6509 3.8627 2.6641 37 1 5.4437 2.3742 3.6179 38 1 7.7083 1.6249 2.9421 39 1 7.9162 3.1131 1.9880 40 1 7.6426 4.4707 4.0446 41 1 7.4346 2.9828 4.9993 42 1 9.6991 2.2322 4.3242 43 1 9.9077 3.7198 3.3694 44 1 12.5841 4.6832 7.1138 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385174243.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:45 Heat of formation + Delta-G solvation = -83.278113 kcal Electronic energy + Delta-G solvation = -18660.126324 eV Core-core repulsion = 15803.870670 eV Total energy + Delta-G solvation = -2856.255655 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.08590 -36.86842 -34.58927 -33.86727 -32.75537 -31.62287 -29.25271 -28.23635 -25.50091 -23.70838 -23.31960 -21.53310 -21.27876 -20.54577 -19.96034 -16.67425 -16.51241 -16.18870 -15.96432 -15.74627 -14.60183 -14.46275 -14.26557 -14.04114 -13.83532 -13.47471 -13.06434 -12.80095 -12.66323 -12.47299 -12.04291 -11.77742 -11.72970 -11.64756 -11.34529 -11.16756 -10.98785 -10.94655 -10.78019 -10.70877 -10.54491 -9.91966 -9.87461 -9.67862 -9.47462 -9.14222 -8.52080 -8.49790 -6.02401 -3.99991 3.32343 3.39357 3.43687 3.62389 3.90773 4.28156 4.47262 4.54389 4.65268 4.79307 4.84459 4.90039 5.05223 5.10492 5.17381 5.30238 5.32583 5.34776 5.42751 5.45961 5.50055 5.62009 5.64568 5.66412 5.79514 5.84027 5.90201 5.93506 6.01694 6.03636 6.11340 6.36435 6.64797 6.66133 6.75938 6.87516 7.04588 7.29614 7.35091 7.47984 7.82742 8.56796 9.02869 9.60554 11.11222 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.045204 B = 0.002732 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.267934 B =10246.366824 C =10403.840459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C 0.080 3.920 4 H 0.067 0.933 5 O -0.375 6.375 6 C 0.044 3.956 7 C -0.143 4.143 8 C -0.117 4.117 9 H 0.084 0.916 10 C 0.066 3.934 11 N -0.690 5.690 12 C 0.059 3.941 13 C -0.118 4.118 14 C -0.101 4.101 15 C -0.014 4.014 16 C -0.520 4.520 17 H 0.070 0.930 18 C 0.064 3.936 19 N -0.906 5.906 20 Si 0.882 3.118 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.266 1.266 24 H 0.060 0.940 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.059 0.941 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.031 0.969 35 H 0.339 0.661 36 H 0.070 0.930 37 H 0.028 0.972 38 H 0.054 0.946 39 H 0.065 0.935 40 H 0.053 0.947 41 H 0.051 0.949 42 H 0.014 0.986 43 H 0.011 0.989 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.272 -8.373 -16.412 27.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C 0.022 3.978 4 H 0.085 0.915 5 O -0.294 6.294 6 C -0.033 4.033 7 C -0.181 4.181 8 C -0.136 4.136 9 H 0.102 0.898 10 C -0.064 4.064 11 N -0.320 5.320 12 C -0.070 4.070 13 C -0.156 4.156 14 C -0.139 4.139 15 C -0.051 4.051 16 C -0.558 4.558 17 H 0.089 0.911 18 C -0.137 4.137 19 N -0.545 5.545 20 Si 0.709 3.291 21 H -0.203 1.203 22 H -0.215 1.215 23 H -0.190 1.190 24 H 0.080 0.920 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.088 0.912 28 H 0.091 0.909 29 H 0.078 0.922 30 H 0.108 0.892 31 H 0.113 0.887 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.049 0.951 35 H 0.156 0.844 36 H 0.089 0.911 37 H 0.046 0.954 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.032 0.968 43 H 0.029 0.971 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -20.181 -7.832 -16.840 27.426 hybrid contribution 0.691 -0.924 0.437 1.234 sum -19.490 -8.755 -16.403 26.936 Atomic orbital electron populations 1.21721 0.95312 1.01458 1.02240 1.21709 0.96779 0.94903 1.02535 1.22814 0.93477 0.94010 0.87490 0.91478 1.88904 1.43514 1.57262 1.39738 1.23622 0.85743 0.92812 1.01078 1.23101 0.98619 0.99767 0.96566 1.22582 0.94667 1.00589 0.95727 0.89774 1.21983 0.88682 1.00428 0.95275 1.60499 1.11184 1.19312 1.41037 1.22059 0.96675 0.98806 0.89419 1.21666 0.93179 1.00799 0.99943 1.21418 0.98465 0.99084 0.94981 1.19568 0.91811 0.96683 0.97068 1.21191 0.93489 1.32984 1.08135 0.91145 1.25062 0.98539 0.95058 0.95044 1.69925 1.15763 1.43289 1.25503 0.86747 0.80914 0.80714 0.80721 1.20308 1.21462 1.19019 0.92050 0.92841 0.92884 0.91243 0.90938 0.92248 0.89201 0.88727 0.90914 0.90911 0.95116 0.84356 0.91142 0.95403 0.92757 0.91659 0.92839 0.93063 0.96788 0.97089 0.92801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.83 37.16 0.37 -0.74 16 2 C -0.12 -0.93 5.42 -26.73 -0.14 -1.08 16 3 C 0.08 0.70 3.08 -26.15 -0.08 0.62 16 4 H 0.07 0.59 7.69 -51.93 -0.40 0.19 16 5 O -0.37 -3.86 10.84 -35.23 -0.38 -4.24 16 6 C 0.04 0.37 7.72 38.21 0.29 0.67 16 7 C -0.14 -1.22 6.64 -24.72 -0.16 -1.38 16 8 C -0.12 -0.99 2.84 -89.09 -0.25 -1.24 16 9 H 0.08 0.69 7.70 -51.93 -0.40 0.29 16 10 C 0.07 0.62 4.78 -3.83 -0.02 0.61 16 11 N -0.69 -7.64 6.21 -113.78 -0.71 -8.35 16 12 C 0.06 0.77 5.68 -3.83 -0.02 0.75 16 13 C -0.12 -1.85 5.47 -26.74 -0.15 -2.00 16 14 C -0.10 -1.99 5.15 -26.73 -0.14 -2.13 16 15 C -0.01 -0.34 4.04 -27.88 -0.11 -0.45 16 16 C -0.52 -15.11 9.66 -34.44 -0.33 -15.44 16 17 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 18 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 19 N -0.91 -28.34 13.96 55.43 0.77 -27.57 16 20 Si 0.88 22.06 27.47 -169.99 -4.67 17.39 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 24 H 0.06 0.51 7.89 -51.93 -0.41 0.10 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.09 0.89 7.67 -51.93 -0.40 0.49 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.72 8.13 -51.93 -0.42 0.30 16 34 H 0.03 0.29 8.14 -51.93 -0.42 -0.14 16 35 H 0.34 3.50 8.73 -39.29 -0.34 3.16 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 41 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.01 0.34 7.20 -51.93 -0.37 -0.04 16 43 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 44 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 347.88 15.07 5.24 5.24 Total: -1.00 -30.91 347.88 -9.23 -40.14 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -8.64 Total: -2.60 kcal Atomic # 6 Polarization: -19.18 SS G_CDS: -0.85 Total: -20.03 kcal Atomic # 7 Polarization: -35.98 SS G_CDS: 0.07 Total: -35.91 kcal Atomic # 8 Polarization: -3.86 SS G_CDS: -0.38 Total: -4.24 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.67 Total: 17.39 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.91 -9.23 -40.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385174243.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.137 kcal (2) G-P(sol) polarization free energy of solvation -30.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds