Wall clock time and date at job start Mon Mar 30 2020 07:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46626 * 2 1 4 4 H 1.08997 * 109.86846 * 54.29633 * 3 2 1 5 5 O 1.43741 * 109.87614 * 293.28782 * 3 2 1 6 6 C 1.44582 * 106.86784 * 214.17101 * 5 3 2 7 7 C 1.55000 * 103.58457 * 39.88500 * 6 5 3 8 8 C 1.54101 * 109.87562 * 175.30315 * 3 2 1 9 9 H 1.08999 * 110.48871 * 2.77635 * 8 3 2 10 10 C 1.53002 * 110.48937 * 240.26218 * 8 3 2 11 11 N 1.46891 * 109.47226 * 175.00084 * 10 8 3 12 12 C 1.46903 * 111.00180 * 180.02562 * 11 10 8 13 13 C 1.52992 * 109.47545 * 179.97438 * 12 11 10 14 14 C 1.52996 * 109.47595 * 179.97438 * 13 12 11 15 15 C 1.53002 * 109.47514 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.46936 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00619 * 0.02562 * 16 15 14 18 18 C 1.37885 * 119.99600 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99515 * 180.02562 * 18 16 15 20 20 Si 1.86794 * 119.99981 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47334 * 90.00017 * 20 18 16 22 22 H 1.48502 * 109.47043 * 209.99985 * 20 18 16 23 23 H 1.48500 * 109.47168 * 329.99436 * 20 18 16 24 24 H 1.09000 * 109.47160 * 60.00369 * 1 2 3 25 25 H 1.09002 * 109.46719 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47839 * 299.99931 * 1 2 3 27 27 H 1.08993 * 109.47839 * 240.00069 * 2 1 3 28 28 H 1.09000 * 109.47160 * 119.99631 * 2 1 3 29 29 H 1.08993 * 110.50764 * 281.38464 * 6 5 3 30 30 H 1.09004 * 110.63949 * 158.44394 * 6 5 3 31 31 H 1.08997 * 110.90730 * 204.85632 * 7 6 5 32 32 H 1.08997 * 110.90851 * 81.25228 * 7 6 5 33 33 H 1.09004 * 109.47119 * 295.00251 * 10 8 3 34 34 H 1.09006 * 109.47035 * 54.99893 * 10 8 3 35 35 H 1.00899 * 111.00140 * 303.95262 * 11 10 8 36 36 H 1.09005 * 109.47213 * 300.00111 * 12 11 10 37 37 H 1.08998 * 109.46883 * 59.99741 * 12 11 10 38 38 H 1.08997 * 109.47272 * 300.00264 * 13 12 11 39 39 H 1.09006 * 109.47025 * 59.99719 * 13 12 11 40 40 H 1.09005 * 109.47298 * 300.00214 * 14 13 12 41 41 H 1.09006 * 109.47054 * 59.99871 * 14 13 12 42 42 H 1.08991 * 109.46940 * 300.00352 * 15 14 13 43 43 H 1.09004 * 109.46525 * 60.00067 * 15 14 13 44 44 H 0.97001 * 119.99737 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5993 1.9912 0.8324 5 8 1.6989 2.0815 -1.2417 6 6 2.7762 2.9938 -1.5538 7 6 4.0487 2.2063 -1.1500 8 6 3.5763 1.4552 0.1187 9 1 3.9666 0.4376 0.1271 10 6 4.0098 2.2042 1.3804 11 7 5.4669 2.1005 1.5351 12 6 5.9203 2.8092 2.7394 13 6 7.4393 2.6785 2.8666 14 6 7.9116 3.4171 4.1205 15 6 9.4306 3.2858 4.2481 16 6 9.8957 4.0139 5.4828 17 1 9.1796 4.5193 6.1138 18 6 11.2356 4.0339 5.8076 19 7 11.6414 4.6688 6.8855 20 14 12.4742 3.1592 4.7168 21 1 12.9671 4.0973 3.6765 22 1 13.6165 2.6905 5.5420 23 1 11.8238 1.9942 4.0648 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.6865 3.9064 -0.9646 30 1 2.7888 3.2232 -2.6193 31 1 4.8689 2.8853 -0.9172 32 1 4.3367 1.5046 -1.9328 33 1 3.7272 3.2535 1.2952 34 1 3.5200 1.7655 2.2498 35 1 5.7610 1.1355 1.5516 36 1 5.6509 3.8627 2.6641 37 1 5.4437 2.3742 3.6179 38 1 7.7083 1.6249 2.9421 39 1 7.9162 3.1131 1.9880 40 1 7.6426 4.4707 4.0446 41 1 7.4346 2.9828 4.9993 42 1 9.6991 2.2322 4.3242 43 1 9.9077 3.7198 3.3694 44 1 12.5841 4.6832 7.1138 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385174243.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:45 Heat of formation + Delta-G solvation = -102.701950 kcal Electronic energy + Delta-G solvation = -18660.968605 eV Core-core repulsion = 15803.870670 eV Total energy + Delta-G solvation = -2857.097935 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.77761 -37.92205 -36.07590 -34.59063 -34.33487 -32.93740 -30.50745 -29.22670 -26.76965 -24.91475 -24.03117 -22.75576 -22.05071 -21.78139 -21.17684 -18.85707 -17.29836 -16.91079 -16.75195 -16.60033 -16.31655 -15.73483 -15.47563 -14.97350 -14.69361 -14.45314 -14.29012 -13.97768 -13.76083 -13.60383 -13.40608 -13.09809 -12.90189 -12.48908 -12.38957 -12.35569 -12.09333 -11.91378 -11.75719 -11.66513 -11.60556 -11.51147 -11.35893 -11.29188 -11.06823 -10.76304 -10.61214 -9.38091 -8.29702 -6.33874 1.36338 1.38115 1.50654 2.36704 2.97221 3.05641 3.06614 3.62427 3.81374 3.95622 4.10772 4.16222 4.18750 4.24798 4.28005 4.42020 4.48801 4.50589 4.51854 4.61737 4.68498 4.78325 4.81874 4.85738 4.92563 4.96426 5.01972 5.09074 5.13821 5.19149 5.21672 5.26824 5.27958 5.28612 5.42564 5.58287 5.65621 5.68906 5.98139 6.04948 6.29297 6.46921 6.74612 7.30937 8.87304 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.045204 B = 0.002732 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.267934 B =10246.366824 C =10403.840459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C 0.079 3.921 4 H 0.065 0.935 5 O -0.393 6.393 6 C 0.041 3.959 7 C -0.139 4.139 8 C -0.110 4.110 9 H 0.091 0.909 10 C 0.070 3.930 11 N -0.690 5.690 12 C 0.068 3.932 13 C -0.106 4.106 14 C -0.096 4.096 15 C -0.013 4.013 16 C -0.535 4.535 17 H 0.029 0.971 18 C -0.001 4.001 19 N -0.954 5.954 20 Si 0.955 3.045 21 H -0.266 1.266 22 H -0.284 1.284 23 H -0.245 1.245 24 H 0.048 0.952 25 H 0.063 0.937 26 H 0.054 0.946 27 H 0.067 0.933 28 H 0.084 0.916 29 H 0.060 0.940 30 H 0.101 0.899 31 H 0.087 0.913 32 H 0.076 0.924 33 H 0.067 0.933 34 H 0.035 0.965 35 H 0.346 0.654 36 H 0.066 0.934 37 H 0.030 0.970 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.046 0.954 41 H 0.045 0.955 42 H 0.019 0.981 43 H 0.017 0.983 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.378 -10.001 -18.254 29.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C 0.021 3.979 4 H 0.083 0.917 5 O -0.313 6.313 6 C -0.035 4.035 7 C -0.177 4.177 8 C -0.129 4.129 9 H 0.110 0.890 10 C -0.060 4.060 11 N -0.321 5.321 12 C -0.061 4.061 13 C -0.144 4.144 14 C -0.134 4.134 15 C -0.050 4.050 16 C -0.573 4.573 17 H 0.047 0.953 18 C -0.197 4.197 19 N -0.595 5.595 20 Si 0.778 3.222 21 H -0.191 1.191 22 H -0.210 1.210 23 H -0.168 1.168 24 H 0.067 0.933 25 H 0.082 0.918 26 H 0.073 0.927 27 H 0.086 0.914 28 H 0.102 0.898 29 H 0.078 0.922 30 H 0.119 0.881 31 H 0.105 0.895 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.054 0.946 35 H 0.164 0.836 36 H 0.085 0.915 37 H 0.048 0.952 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.038 0.962 43 H 0.036 0.964 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -20.312 -9.466 -18.694 29.183 hybrid contribution 0.656 -0.350 1.078 1.310 sum -19.656 -9.815 -17.616 28.161 Atomic orbital electron populations 1.21708 0.95249 1.01981 1.01700 1.21723 0.96850 0.94248 1.02993 1.22877 0.93572 0.94532 0.86969 0.91696 1.88891 1.44331 1.57708 1.40364 1.23720 0.85360 0.92597 1.01854 1.23056 0.98268 0.99666 0.96705 1.22517 0.94515 1.00759 0.95106 0.89043 1.21962 0.87642 1.00382 0.95982 1.60431 1.12238 1.19701 1.39742 1.21849 0.94813 0.99021 0.90431 1.21480 0.94960 1.00488 0.97427 1.21296 0.95612 0.99401 0.97085 1.19544 0.94764 0.96002 0.94682 1.21581 0.93165 1.33082 1.09498 0.95277 1.26108 1.01024 0.95951 0.96647 1.70084 1.16533 1.45123 1.27717 0.85581 0.77830 0.80062 0.78702 1.19141 1.20968 1.16832 0.93275 0.91808 0.92723 0.91433 0.89761 0.92197 0.88124 0.89454 0.90518 0.91433 0.94633 0.83583 0.91507 0.95216 0.91898 0.91684 0.93566 0.93591 0.96236 0.96438 0.92520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.83 71.98 0.71 -1.30 16 2 C -0.12 -1.64 5.42 30.60 0.17 -1.47 16 3 C 0.08 1.25 3.08 30.97 0.10 1.35 16 4 H 0.07 1.05 7.69 -2.39 -0.02 1.03 16 5 O -0.39 -7.63 10.84 -148.98 -1.61 -9.25 16 6 C 0.04 0.64 7.72 72.67 0.56 1.20 16 7 C -0.14 -2.14 6.64 31.90 0.21 -1.93 16 8 C -0.11 -1.64 2.84 -9.80 -0.03 -1.67 16 9 H 0.09 1.26 7.70 -2.39 -0.02 1.24 16 10 C 0.07 1.18 4.78 86.31 0.41 1.59 16 11 N -0.69 -13.65 6.21 -513.89 -3.19 -16.84 16 12 C 0.07 1.64 5.68 86.30 0.49 2.13 16 13 C -0.11 -3.09 5.47 30.59 0.17 -2.92 16 14 C -0.10 -3.69 5.15 30.59 0.16 -3.53 16 15 C -0.01 -0.59 4.04 29.85 0.12 -0.47 16 16 C -0.54 -31.62 9.66 25.60 0.25 -31.37 16 17 H 0.03 1.89 7.99 -2.91 -0.02 1.86 16 18 C 0.00 -0.06 5.47 84.66 0.46 0.40 16 19 N -0.95 -60.92 13.96 21.45 0.30 -60.62 16 20 Si 0.96 44.84 27.47 68.60 1.88 46.72 16 21 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 22 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 23 H -0.24 -10.60 6.54 99.48 0.65 -9.95 16 24 H 0.05 0.77 7.89 -2.39 -0.02 0.76 16 25 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.10 1.32 8.14 -2.39 -0.02 1.31 16 31 H 0.09 1.49 7.67 -2.39 -0.02 1.47 16 32 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.07 1.23 8.13 -2.39 -0.02 1.21 16 34 H 0.04 0.58 8.14 -2.38 -0.02 0.57 16 35 H 0.35 6.16 8.73 -89.69 -0.78 5.37 16 36 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 37 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.06 1.92 8.14 -2.38 -0.02 1.90 16 40 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 41 H 0.05 1.79 8.14 -2.38 -0.02 1.77 16 42 H 0.02 0.90 7.20 -2.39 -0.02 0.88 16 43 H 0.02 0.80 7.57 -2.39 -0.02 0.78 16 44 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 Total: -1.00 -66.51 347.88 1.24 -65.27 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: 0.09 Total: 12.70 kcal Atomic # 6 Polarization: -41.76 SS G_CDS: 3.77 Total: -37.99 kcal Atomic # 7 Polarization: -74.56 SS G_CDS: -2.89 Total: -77.45 kcal Atomic # 8 Polarization: -7.63 SS G_CDS: -1.61 Total: -9.25 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 1.88 Total: 46.72 kcal Total: -66.51 1.24 -65.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385174243.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.433 kcal (2) G-P(sol) polarization free energy of solvation -66.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds