Wall clock time and date at job start Mon Mar 30 2020 07:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46766 * 2 1 4 4 H 1.08994 * 109.50610 * 304.92037 * 3 2 1 5 5 C 1.53120 * 109.50027 * 65.00657 * 3 2 1 6 6 C 1.53119 * 109.15906 * 177.63175 * 5 3 2 7 7 C 1.53034 * 109.27844 * 302.34472 * 6 5 3 8 8 H 1.09000 * 109.46426 * 179.20003 * 7 6 5 9 9 C 1.53006 * 109.44923 * 299.16593 * 7 6 5 10 10 N 1.46846 * 109.52613 * 59.17591 * 7 6 5 11 11 C 1.46904 * 111.00181 * 174.16369 * 10 7 6 12 12 C 1.52998 * 109.47098 * 176.35963 * 11 10 7 13 13 O 1.42900 * 109.47051 * 62.28890 * 12 11 10 14 14 C 1.42897 * 114.00107 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.47160 * 179.97438 * 14 13 12 16 16 H 1.07994 * 120.00345 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99950 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99762 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99950 * 179.72524 * 17 15 14 20 20 H 1.48502 * 109.46860 * 180.27691 * 19 17 15 21 21 H 1.48497 * 109.47024 * 300.27800 * 19 17 15 22 22 H 1.48498 * 109.47089 * 60.27698 * 19 17 15 23 23 C 1.46849 * 111.19776 * 298.26110 * 10 7 6 24 24 H 1.09000 * 109.47293 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47001 * 299.99796 * 1 2 3 26 26 H 1.08997 * 109.47171 * 59.99797 * 1 2 3 27 27 H 1.08999 * 109.47001 * 240.00204 * 2 1 3 28 28 H 1.08997 * 109.47171 * 120.00203 * 2 1 3 29 29 H 1.08998 * 109.52618 * 57.72113 * 5 3 2 30 30 H 1.09005 * 109.51918 * 297.53157 * 5 3 2 31 31 H 1.08994 * 109.50438 * 182.39755 * 6 5 3 32 32 H 1.09001 * 109.53606 * 62.29866 * 6 5 3 33 33 H 1.09008 * 109.46797 * 180.02562 * 9 7 6 34 34 H 1.08998 * 109.47177 * 300.04917 * 9 7 6 35 35 H 1.09003 * 109.47138 * 60.05122 * 9 7 6 36 36 H 1.09006 * 109.46780 * 56.36160 * 11 10 7 37 37 H 1.08998 * 109.46869 * 296.36233 * 11 10 7 38 38 H 1.08997 * 109.47160 * 302.28578 * 12 11 10 39 39 H 1.08999 * 109.46743 * 182.28068 * 12 11 10 40 40 H 1.09004 * 109.47202 * 59.99640 * 14 13 12 41 41 H 1.08994 * 109.47484 * 299.99944 * 14 13 12 42 42 H 0.97000 * 119.99965 * 359.71840 * 18 17 15 43 43 H 1.09000 * 109.45823 * 181.75870 * 23 10 7 44 44 H 1.09003 * 109.46084 * 301.72230 * 23 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6068 1.9817 -0.8424 5 6 1.6353 2.1277 1.3082 6 6 2.1998 3.5510 1.3256 7 6 3.7207 3.4933 1.1658 8 1 4.1243 4.5058 1.1635 9 6 4.3258 2.7061 2.3299 10 7 4.0564 2.8298 -0.1005 11 6 5.5026 2.8793 -0.3536 12 6 5.8236 2.1017 -1.6315 13 8 5.1694 2.7192 -2.7418 14 6 5.4056 2.0675 -3.9914 15 6 4.6716 2.7986 -5.0859 16 1 4.0839 3.6737 -4.8508 17 6 4.7512 2.3510 -6.3876 18 7 5.4672 1.2857 -6.6740 19 14 3.8351 3.2528 -7.7430 20 1 4.0767 2.5727 -9.0409 21 1 2.3804 3.2483 -7.4450 22 1 4.3202 4.6542 -7.8206 23 6 3.5655 1.4459 -0.1212 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 2.0360 1.5666 2.1524 30 1 0.5482 2.1661 1.3781 31 1 1.9512 4.0295 2.2728 32 1 1.7692 4.1239 0.5043 33 1 5.4092 2.6652 2.2167 34 1 4.0767 3.1985 3.2699 35 1 3.9226 1.6934 2.3322 36 1 6.0340 2.4324 0.4868 37 1 5.8155 3.9167 -0.4712 38 1 5.4740 1.0743 -1.5292 39 1 6.9009 2.1041 -1.7973 40 1 5.0476 1.0393 -3.9384 41 1 6.4742 2.0695 -4.2061 42 1 5.9427 0.8173 -5.9701 43 1 3.8565 0.9715 -1.0584 44 1 3.9976 0.8948 0.7141 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385255193.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:27 Heat of formation + Delta-G solvation = -67.377145 kcal Electronic energy + Delta-G solvation = -20169.054088 eV Core-core repulsion = 17313.487951 eV Total energy + Delta-G solvation = -2855.566137 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.87241 -36.84724 -35.19173 -33.26551 -32.50977 -30.02052 -28.87054 -27.18232 -26.13675 -24.00830 -23.59690 -22.44108 -21.18053 -20.39837 -18.54374 -16.92946 -16.49661 -15.68247 -15.12595 -14.73130 -14.60625 -14.26960 -14.23367 -13.68885 -13.47623 -13.12952 -12.89770 -12.86095 -12.39628 -12.19719 -12.11743 -11.83940 -11.65952 -11.21823 -11.17186 -11.07467 -10.87253 -10.82041 -10.64274 -10.31967 -10.23681 -10.08114 -10.05137 -9.80027 -8.76439 -8.57581 -8.17323 -7.93361 -6.41280 -4.08851 3.46512 3.49514 3.68161 4.02421 4.48740 4.71347 4.75548 4.85339 4.93554 5.04541 5.16211 5.27547 5.30686 5.36525 5.40723 5.48132 5.54081 5.55299 5.62096 5.66575 5.72815 5.77670 5.85620 5.90668 5.93309 5.98274 6.04173 6.07833 6.12979 6.18384 6.22356 6.28545 6.31200 6.47345 6.61023 6.81386 7.18475 7.35884 7.39720 7.97681 8.25344 8.71773 8.88035 9.61565 10.98915 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.020205 B = 0.005257 C = 0.004673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.460746 B = 5324.726532 C = 5990.423365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C -0.084 4.084 4 H 0.082 0.918 5 C -0.115 4.115 6 C -0.110 4.110 7 C 0.080 3.920 8 H 0.079 0.921 9 C -0.190 4.190 10 N -0.515 5.515 11 C 0.060 3.940 12 C 0.058 3.942 13 O -0.368 6.368 14 C 0.185 3.815 15 C -0.591 4.591 16 H 0.060 0.940 17 C 0.016 3.984 18 N -0.913 5.913 19 Si 1.078 2.922 20 H -0.282 1.282 21 H -0.286 1.286 22 H -0.286 1.286 23 C 0.055 3.945 24 H 0.050 0.950 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.062 0.938 36 H 0.040 0.960 37 H 0.080 0.920 38 H 0.038 0.962 39 H 0.038 0.962 40 H -0.008 1.008 41 H -0.009 1.009 42 H 0.266 0.734 43 H 0.082 0.918 44 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.629 -0.119 18.635 19.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.157 4.157 3 C -0.103 4.103 4 H 0.100 0.900 5 C -0.152 4.152 6 C -0.148 4.148 7 C -0.029 4.029 8 H 0.097 0.903 9 C -0.248 4.248 10 N -0.239 5.239 11 C -0.067 4.067 12 C -0.020 4.020 13 O -0.287 6.287 14 C 0.110 3.890 15 C -0.629 4.629 16 H 0.079 0.921 17 C -0.187 4.187 18 N -0.550 5.550 19 Si 0.905 3.095 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.212 1.212 23 C -0.072 4.072 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.058 0.942 37 H 0.098 0.902 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.009 0.991 41 H 0.009 0.991 42 H 0.076 0.924 43 H 0.100 0.900 44 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -6.279 0.300 16.627 17.776 hybrid contribution 1.084 -0.777 2.361 2.712 sum -5.195 -0.477 18.988 19.691 Atomic orbital electron populations 1.21786 0.95889 1.01229 1.01898 1.21523 0.95924 0.96463 1.01771 1.21190 0.95043 0.95592 0.98447 0.89955 1.21690 1.00213 0.95894 0.97416 1.21572 0.94496 0.97226 1.01521 1.21673 0.95813 0.98011 0.87400 0.90304 1.22530 1.01027 1.01758 0.99518 1.62005 1.13751 1.16636 1.31499 1.22147 0.87906 1.01543 0.95132 1.22405 0.95691 0.95645 0.88229 1.88008 1.71555 1.53847 1.15322 1.20257 0.94859 0.92575 0.81269 1.21898 1.33009 1.15213 0.92795 0.92122 1.25921 0.97088 0.96654 0.99029 1.70804 1.29427 1.18017 1.36724 0.83416 0.75660 0.75188 0.75190 1.20704 1.21215 1.21242 1.22216 0.94797 0.89275 1.00938 0.93113 0.92782 0.92504 0.91747 0.92560 0.92430 0.91974 0.92033 0.90960 0.92757 0.92411 0.91962 0.94227 0.90193 0.94440 0.94415 0.99051 0.99099 0.92418 0.89986 0.95346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.67 37.16 0.36 -1.21 16 2 C -0.12 -1.39 5.41 -26.73 -0.14 -1.54 16 3 C -0.08 -1.11 2.35 -90.54 -0.21 -1.32 16 4 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 5 C -0.11 -1.27 4.67 -26.61 -0.12 -1.39 16 6 C -0.11 -1.26 5.61 -26.65 -0.15 -1.41 16 7 C 0.08 1.00 2.93 -67.72 -0.20 0.80 16 8 H 0.08 0.98 8.12 -51.93 -0.42 0.56 16 9 C -0.19 -2.01 8.19 37.16 0.30 -1.71 16 10 N -0.52 -8.05 4.62 -226.68 -1.05 -9.09 16 11 C 0.06 0.95 5.33 -3.82 -0.02 0.93 16 12 C 0.06 1.11 5.57 37.16 0.21 1.32 16 13 O -0.37 -9.22 10.23 -35.23 -0.36 -9.58 16 14 C 0.19 5.19 5.00 36.00 0.18 5.37 16 15 C -0.59 -18.04 9.43 -34.44 -0.32 -18.36 16 16 H 0.06 1.87 7.81 -52.49 -0.41 1.46 16 17 C 0.02 0.47 5.46 -17.82 -0.10 0.37 16 18 N -0.91 -28.50 13.65 55.43 0.76 -27.74 16 19 Si 1.08 26.02 29.90 -169.99 -5.08 20.94 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 23 C 0.06 0.82 4.03 -3.83 -0.02 0.81 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.05 0.51 6.62 -51.93 -0.34 0.16 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.60 6.56 -51.93 -0.34 0.26 16 30 H 0.06 0.63 6.69 -51.93 -0.35 0.29 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.05 0.58 6.47 -51.92 -0.34 0.24 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.68 4.80 -51.93 -0.25 0.43 16 36 H 0.04 0.53 6.30 -51.93 -0.33 0.20 16 37 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 38 H 0.04 0.70 6.05 -51.93 -0.31 0.38 16 39 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 40 H -0.01 -0.23 8.01 -51.93 -0.42 -0.65 16 41 H -0.01 -0.25 8.00 -51.93 -0.42 -0.66 16 42 H 0.27 8.25 7.22 -40.82 -0.29 7.96 16 43 H 0.08 1.43 5.79 -51.93 -0.30 1.13 16 44 H 0.03 0.38 6.19 -51.93 -0.32 0.06 16 LS Contribution 329.44 15.07 4.96 4.96 Total: -1.00 -32.23 329.44 -8.87 -41.10 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -7.86 Total: -3.24 kcal Atomic # 6 Polarization: -17.11 SS G_CDS: -0.24 Total: -17.34 kcal Atomic # 7 Polarization: -36.55 SS G_CDS: -0.29 Total: -36.83 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: -0.36 Total: -9.58 kcal Atomic # 14 Polarization: 26.02 SS G_CDS: -5.08 Total: 20.94 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.23 -8.87 -41.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385255193.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.282 kcal (2) G-P(sol) polarization free energy of solvation -32.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds