Wall clock time and date at job start Mon Mar 30 2020 07:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46766 * 2 1 4 4 H 1.08994 * 109.50610 * 304.92037 * 3 2 1 5 5 C 1.53120 * 109.50027 * 65.00657 * 3 2 1 6 6 C 1.53119 * 109.15906 * 177.63175 * 5 3 2 7 7 C 1.53034 * 109.27844 * 302.34472 * 6 5 3 8 8 H 1.09000 * 109.46426 * 179.20003 * 7 6 5 9 9 C 1.53006 * 109.44923 * 299.16593 * 7 6 5 10 10 N 1.46846 * 109.52613 * 59.17591 * 7 6 5 11 11 C 1.46904 * 111.00181 * 174.16369 * 10 7 6 12 12 C 1.52998 * 109.47098 * 176.35963 * 11 10 7 13 13 O 1.42900 * 109.47051 * 62.28890 * 12 11 10 14 14 C 1.42897 * 114.00107 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.47160 * 179.97438 * 14 13 12 16 16 H 1.07994 * 120.00345 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99950 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99762 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99950 * 179.72524 * 17 15 14 20 20 H 1.48502 * 109.46860 * 180.27691 * 19 17 15 21 21 H 1.48497 * 109.47024 * 300.27800 * 19 17 15 22 22 H 1.48498 * 109.47089 * 60.27698 * 19 17 15 23 23 C 1.46849 * 111.19776 * 298.26110 * 10 7 6 24 24 H 1.09000 * 109.47293 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47001 * 299.99796 * 1 2 3 26 26 H 1.08997 * 109.47171 * 59.99797 * 1 2 3 27 27 H 1.08999 * 109.47001 * 240.00204 * 2 1 3 28 28 H 1.08997 * 109.47171 * 120.00203 * 2 1 3 29 29 H 1.08998 * 109.52618 * 57.72113 * 5 3 2 30 30 H 1.09005 * 109.51918 * 297.53157 * 5 3 2 31 31 H 1.08994 * 109.50438 * 182.39755 * 6 5 3 32 32 H 1.09001 * 109.53606 * 62.29866 * 6 5 3 33 33 H 1.09008 * 109.46797 * 180.02562 * 9 7 6 34 34 H 1.08998 * 109.47177 * 300.04917 * 9 7 6 35 35 H 1.09003 * 109.47138 * 60.05122 * 9 7 6 36 36 H 1.09006 * 109.46780 * 56.36160 * 11 10 7 37 37 H 1.08998 * 109.46869 * 296.36233 * 11 10 7 38 38 H 1.08997 * 109.47160 * 302.28578 * 12 11 10 39 39 H 1.08999 * 109.46743 * 182.28068 * 12 11 10 40 40 H 1.09004 * 109.47202 * 59.99640 * 14 13 12 41 41 H 1.08994 * 109.47484 * 299.99944 * 14 13 12 42 42 H 0.97000 * 119.99965 * 359.71840 * 18 17 15 43 43 H 1.09000 * 109.45823 * 181.75870 * 23 10 7 44 44 H 1.09003 * 109.46084 * 301.72230 * 23 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6068 1.9817 -0.8424 5 6 1.6353 2.1277 1.3082 6 6 2.1998 3.5510 1.3256 7 6 3.7207 3.4933 1.1658 8 1 4.1243 4.5058 1.1635 9 6 4.3258 2.7061 2.3299 10 7 4.0564 2.8298 -0.1005 11 6 5.5026 2.8793 -0.3536 12 6 5.8236 2.1017 -1.6315 13 8 5.1694 2.7192 -2.7418 14 6 5.4056 2.0675 -3.9914 15 6 4.6716 2.7986 -5.0859 16 1 4.0839 3.6737 -4.8508 17 6 4.7512 2.3510 -6.3876 18 7 5.4672 1.2857 -6.6740 19 14 3.8351 3.2528 -7.7430 20 1 4.0767 2.5727 -9.0409 21 1 2.3804 3.2483 -7.4450 22 1 4.3202 4.6542 -7.8206 23 6 3.5655 1.4459 -0.1212 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 2.0360 1.5666 2.1524 30 1 0.5482 2.1661 1.3781 31 1 1.9512 4.0295 2.2728 32 1 1.7692 4.1239 0.5043 33 1 5.4092 2.6652 2.2167 34 1 4.0767 3.1985 3.2699 35 1 3.9226 1.6934 2.3322 36 1 6.0340 2.4324 0.4868 37 1 5.8155 3.9167 -0.4712 38 1 5.4740 1.0743 -1.5292 39 1 6.9009 2.1041 -1.7973 40 1 5.0476 1.0393 -3.9384 41 1 6.4742 2.0695 -4.2061 42 1 5.9427 0.8173 -5.9701 43 1 3.8565 0.9715 -1.0584 44 1 3.9976 0.8948 0.7141 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385255193.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:26 Heat of formation + Delta-G solvation = -88.015478 kcal Electronic energy + Delta-G solvation = -20169.949033 eV Core-core repulsion = 17313.487951 eV Total energy + Delta-G solvation = -2856.461082 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.97024 -38.67573 -36.33565 -35.25614 -33.92121 -30.96355 -30.31435 -28.58629 -27.86585 -25.19462 -24.73070 -24.54356 -22.41932 -21.48367 -19.58333 -19.19512 -17.75265 -17.50043 -16.30601 -16.21112 -15.71604 -15.68881 -15.45638 -15.31256 -14.93088 -14.45267 -14.16467 -14.12718 -13.85364 -13.56910 -13.18094 -13.07304 -12.90873 -12.78055 -12.64866 -12.44400 -12.16007 -11.98543 -11.90365 -11.83508 -11.71099 -11.30389 -11.08345 -10.94346 -10.85209 -10.82161 -10.32269 -9.07086 -8.84382 -6.54661 1.51384 1.60681 1.82067 2.48790 2.87175 3.02565 3.10325 3.75110 3.77988 3.90359 4.09118 4.12768 4.16752 4.26187 4.30710 4.34702 4.38735 4.46112 4.51008 4.55004 4.64610 4.66348 4.72293 4.79303 4.82625 4.87166 4.95292 4.97925 5.06185 5.06649 5.12449 5.18602 5.23586 5.26918 5.36602 5.51931 5.60313 5.68141 5.91361 6.18926 6.31079 6.33082 6.69797 7.26137 8.56485 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.020205 B = 0.005257 C = 0.004673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.460746 B = 5324.726532 C = 5990.423365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C -0.082 4.082 4 H 0.047 0.953 5 C -0.107 4.107 6 C -0.109 4.109 7 C 0.077 3.923 8 H 0.078 0.922 9 C -0.181 4.181 10 N -0.544 5.544 11 C 0.069 3.931 12 C 0.050 3.950 13 O -0.386 6.386 14 C 0.198 3.802 15 C -0.620 4.620 16 H 0.050 0.950 17 C -0.028 4.028 18 N -0.928 5.928 19 Si 1.127 2.873 20 H -0.274 1.274 21 H -0.269 1.269 22 H -0.266 1.266 23 C 0.060 3.940 24 H 0.061 0.939 25 H 0.069 0.931 26 H 0.042 0.958 27 H 0.043 0.957 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.050 0.950 33 H 0.053 0.947 34 H 0.078 0.922 35 H 0.061 0.939 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.041 0.959 39 H 0.046 0.954 40 H -0.024 1.024 41 H -0.021 1.021 42 H 0.254 0.746 43 H 0.045 0.955 44 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.513 0.373 20.434 21.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C -0.101 4.101 4 H 0.066 0.934 5 C -0.144 4.144 6 C -0.147 4.147 7 C -0.031 4.031 8 H 0.096 0.904 9 C -0.240 4.240 10 N -0.268 5.268 11 C -0.059 4.059 12 C -0.028 4.028 13 O -0.305 6.305 14 C 0.122 3.878 15 C -0.658 4.658 16 H 0.069 0.931 17 C -0.226 4.226 18 N -0.564 5.564 19 Si 0.946 3.054 20 H -0.199 1.199 21 H -0.194 1.194 22 H -0.191 1.191 23 C -0.067 4.067 24 H 0.080 0.920 25 H 0.088 0.912 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.107 0.893 32 H 0.069 0.931 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.059 0.941 39 H 0.064 0.936 40 H -0.006 1.006 41 H -0.003 1.003 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.151 0.789 18.472 19.824 hybrid contribution 1.403 -0.949 1.881 2.531 sum -5.749 -0.160 20.353 21.150 Atomic orbital electron populations 1.21766 0.94680 1.02042 1.02001 1.21506 0.96973 0.95346 1.01623 1.21150 0.93784 0.96478 0.98706 0.93395 1.21647 1.01056 0.95480 0.96221 1.21586 0.93622 0.97415 1.02071 1.21774 0.96709 0.97925 0.86726 0.90408 1.22441 1.00738 1.01454 0.99355 1.61969 1.13497 1.17240 1.34131 1.22066 0.88894 1.00938 0.93972 1.22753 0.95802 0.96389 0.87810 1.87956 1.72610 1.54386 1.15564 1.19910 0.93591 0.91670 0.82607 1.22236 1.33774 1.15466 0.94293 0.93121 1.27613 0.96782 0.96433 1.01722 1.70930 1.30268 1.18893 1.36339 0.82837 0.75335 0.74910 0.72323 1.19885 1.19364 1.19142 1.22119 0.95969 0.89053 0.99609 0.91963 0.91210 0.93851 0.93784 0.90787 0.90764 0.90722 0.89324 0.93078 0.92807 0.90322 0.91999 0.91088 0.90524 0.94142 0.93551 1.00601 1.00309 0.93667 0.93704 0.93557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 9.67 71.98 0.70 -2.20 16 2 C -0.12 -2.66 5.41 30.60 0.17 -2.50 16 3 C -0.08 -2.17 2.35 -10.74 -0.03 -2.19 16 4 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 5 C -0.11 -2.12 4.67 30.67 0.14 -1.98 16 6 C -0.11 -2.28 5.61 30.65 0.17 -2.11 16 7 C 0.08 1.77 2.93 44.94 0.13 1.91 16 8 H 0.08 1.81 8.12 -2.39 -0.02 1.79 16 9 C -0.18 -3.26 8.19 71.98 0.59 -2.67 16 10 N -0.54 -16.81 4.62 -871.09 -4.02 -20.83 16 11 C 0.07 2.13 5.33 86.30 0.46 2.59 16 12 C 0.05 1.94 5.57 71.98 0.40 2.34 16 13 O -0.39 -20.02 10.23 -148.98 -1.52 -21.55 16 14 C 0.20 11.55 5.00 71.24 0.36 11.90 16 15 C -0.62 -38.86 9.43 25.60 0.24 -38.62 16 16 H 0.05 3.20 7.81 -2.91 -0.02 3.18 16 17 C -0.03 -1.70 5.46 84.66 0.46 -1.24 16 18 N -0.93 -58.78 13.65 21.45 0.29 -58.49 16 19 Si 1.13 51.90 29.90 68.60 2.05 53.95 16 20 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 21 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 22 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 23 C 0.06 1.79 4.03 86.32 0.35 2.13 16 24 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.07 1.15 6.62 -2.39 -0.02 1.13 16 26 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.07 1.27 6.56 -2.39 -0.02 1.26 16 30 H 0.07 1.32 6.69 -2.38 -0.02 1.30 16 31 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.05 0.97 6.47 -2.38 -0.02 0.96 16 34 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.06 1.12 4.80 -2.39 -0.01 1.11 16 36 H 0.07 1.76 6.30 -2.38 -0.02 1.74 16 37 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 38 H 0.04 1.56 6.05 -2.39 -0.01 1.54 16 39 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 40 H -0.02 -1.42 8.01 -2.38 -0.02 -1.44 16 41 H -0.02 -1.23 8.00 -2.39 -0.02 -1.25 16 42 H 0.25 16.29 7.22 -92.71 -0.67 15.62 16 43 H 0.04 1.64 5.79 -2.39 -0.01 1.63 16 44 H 0.05 1.19 6.19 -2.39 -0.01 1.17 16 Total: -1.00 -70.94 329.44 1.98 -68.96 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: 1.04 Total: 10.60 kcal Atomic # 6 Polarization: -36.78 SS G_CDS: 4.14 Total: -32.64 kcal Atomic # 7 Polarization: -75.60 SS G_CDS: -3.73 Total: -79.32 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: -1.52 Total: -21.55 kcal Atomic # 14 Polarization: 51.90 SS G_CDS: 2.05 Total: 53.95 kcal Total: -70.94 1.98 -68.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385255193.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.057 kcal (2) G-P(sol) polarization free energy of solvation -70.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds