Wall clock time and date at job start Mon Mar 30 2020 07:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47521 * 2 1 4 4 H 1.08993 * 109.50519 * 304.92425 * 3 2 1 5 5 C 1.53121 * 109.50111 * 65.00429 * 3 2 1 6 6 C 1.53120 * 109.15897 * 177.59384 * 5 3 2 7 7 C 1.53031 * 109.28018 * 302.34426 * 6 5 3 8 8 H 1.09003 * 109.46277 * 299.17159 * 7 6 5 9 9 C 1.52997 * 109.46186 * 179.19741 * 7 6 5 10 10 N 1.46847 * 109.52480 * 59.18077 * 7 6 5 11 11 C 1.46898 * 111.00035 * 174.16440 * 10 7 6 12 12 C 1.52997 * 109.47304 * 176.08599 * 11 10 7 13 13 O 1.42903 * 109.46937 * 62.29296 * 12 11 10 14 14 C 1.42901 * 113.99858 * 180.02562 * 13 12 11 15 15 C 1.50708 * 109.47148 * 179.97438 * 14 13 12 16 16 H 1.07997 * 119.99538 * 0.02562 * 15 14 13 17 17 C 1.37874 * 120.00197 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99684 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00083 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47431 * 89.99798 * 19 17 15 21 21 H 1.48496 * 109.46833 * 209.99925 * 19 17 15 22 22 H 1.48498 * 109.47011 * 329.99460 * 19 17 15 23 23 C 1.46853 * 111.19708 * 298.25960 * 10 7 6 24 24 H 1.08993 * 109.47798 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46842 * 299.99953 * 1 2 3 26 26 H 1.09002 * 109.47046 * 59.99201 * 1 2 3 27 27 H 1.09005 * 109.46842 * 240.00047 * 2 1 3 28 28 H 1.09002 * 109.47046 * 120.00799 * 2 1 3 29 29 H 1.09000 * 109.52296 * 57.68767 * 5 3 2 30 30 H 1.09002 * 109.56902 * 297.52731 * 5 3 2 31 31 H 1.09002 * 109.50228 * 182.40241 * 6 5 3 32 32 H 1.08999 * 109.53347 * 62.30866 * 6 5 3 33 33 H 1.08995 * 109.47580 * 59.99909 * 9 7 6 34 34 H 1.09000 * 109.47378 * 299.99662 * 9 7 6 35 35 H 1.09003 * 109.47122 * 179.97438 * 9 7 6 36 36 H 1.09008 * 109.46805 * 296.08505 * 11 10 7 37 37 H 1.09000 * 109.47353 * 56.08645 * 11 10 7 38 38 H 1.08992 * 109.47518 * 182.28988 * 12 11 10 39 39 H 1.09001 * 109.46965 * 302.29533 * 12 11 10 40 40 H 1.08998 * 109.47219 * 299.99709 * 14 13 12 41 41 H 1.08995 * 109.47192 * 60.00218 * 14 13 12 42 42 H 0.97007 * 119.99544 * 180.02562 * 18 17 15 43 43 H 1.09004 * 109.45793 * 301.72645 * 23 10 7 44 44 H 1.08998 * 109.45337 * 181.75550 * 23 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6069 1.9816 -0.8424 5 6 1.6355 2.1277 1.3082 6 6 2.2009 3.5505 1.3259 7 6 3.7218 3.4919 1.1667 8 1 4.1524 2.9306 1.9959 9 6 4.2892 4.9127 1.1638 10 7 4.0574 2.8284 -0.0996 11 6 5.5037 2.8769 -0.3522 12 6 5.8255 2.0937 -1.6265 13 8 5.1719 2.7063 -2.7399 14 6 5.4079 2.0484 -3.9863 15 6 4.6745 2.7746 -5.0845 16 1 4.0874 3.6512 -4.8537 17 6 4.7541 2.3207 -6.3840 18 7 5.4704 1.2542 -6.6652 19 14 3.8457 3.2213 -7.7452 20 1 4.7274 4.2690 -8.3198 21 1 3.4649 2.2570 -8.8083 22 1 2.6224 3.8539 -7.1896 23 6 3.5656 1.4448 -0.1208 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5140 -0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5140 0.8899 29 1 2.0355 1.5661 2.1524 30 1 0.5485 2.1668 1.3789 31 1 1.9524 4.0291 2.2732 32 1 1.7708 4.1239 0.5048 33 1 4.0410 5.4051 2.1040 34 1 3.8585 5.4744 0.3348 35 1 5.3726 4.8711 1.0508 36 1 5.8166 3.9140 -0.4744 37 1 6.0348 2.4340 0.4903 38 1 6.9028 2.0954 -1.7918 39 1 5.4758 1.0668 -1.5198 40 1 6.4766 2.0487 -4.2007 41 1 5.0493 1.0207 -3.9284 42 1 5.5266 0.9350 -7.5795 43 1 3.9970 0.8933 0.7146 44 1 3.8565 0.9705 -1.0581 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385255196.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:29 Heat of formation + Delta-G solvation = -67.687064 kcal Electronic energy + Delta-G solvation = -20048.110666 eV Core-core repulsion = 17192.531090 eV Total energy + Delta-G solvation = -2855.579576 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.51991 -36.67470 -35.22043 -33.08220 -32.38723 -30.58102 -28.79629 -27.00656 -26.41926 -24.04362 -22.81415 -22.24387 -21.13144 -20.06768 -19.48695 -16.33965 -16.13427 -15.56778 -15.10393 -14.83078 -14.42463 -14.37812 -14.07098 -13.85449 -13.53752 -13.15657 -12.84075 -12.60784 -12.27855 -12.09664 -11.85741 -11.77698 -11.48366 -11.23650 -11.06236 -10.95989 -10.80540 -10.76272 -10.67789 -10.46864 -10.40736 -10.05362 -9.94129 -9.75672 -9.02768 -8.73214 -8.08254 -7.91470 -6.05410 -4.06026 3.34061 3.38808 3.44960 4.04510 4.40405 4.79236 4.84671 4.88653 4.99159 5.06489 5.26725 5.31177 5.32701 5.39691 5.53288 5.56560 5.59536 5.60716 5.71005 5.79014 5.81978 5.89256 5.92085 5.96569 5.98684 6.06897 6.12558 6.13947 6.19404 6.25753 6.26350 6.37069 6.40464 6.51379 6.63666 7.16436 7.42243 7.45758 7.49677 7.86859 8.23102 8.68245 9.09041 9.58691 11.06327 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.018178 B = 0.005386 C = 0.004755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.941946 B = 5197.153607 C = 5886.627611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C -0.084 4.084 4 H 0.083 0.917 5 C -0.114 4.114 6 C -0.111 4.111 7 C 0.082 3.918 8 H 0.031 0.969 9 C -0.148 4.148 10 N -0.517 5.517 11 C 0.060 3.940 12 C 0.061 3.939 13 O -0.377 6.377 14 C 0.194 3.806 15 C -0.508 4.508 16 H 0.067 0.933 17 C 0.055 3.945 18 N -0.901 5.901 19 Si 0.906 3.094 20 H -0.279 1.279 21 H -0.286 1.286 22 H -0.271 1.271 23 C 0.059 3.941 24 H 0.050 0.950 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.065 0.935 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.053 0.947 34 H 0.067 0.933 35 H 0.055 0.945 36 H 0.084 0.916 37 H 0.033 0.967 38 H 0.038 0.962 39 H 0.037 0.963 40 H 0.001 0.999 41 H 0.002 0.998 42 H 0.263 0.737 43 H 0.022 0.978 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.444 0.426 17.722 18.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.157 4.157 3 C -0.103 4.103 4 H 0.101 0.899 5 C -0.152 4.152 6 C -0.149 4.149 7 C -0.026 4.026 8 H 0.049 0.951 9 C -0.205 4.205 10 N -0.242 5.242 11 C -0.067 4.067 12 C -0.017 4.017 13 O -0.296 6.296 14 C 0.119 3.881 15 C -0.547 4.547 16 H 0.085 0.915 17 C -0.146 4.146 18 N -0.540 5.540 19 Si 0.734 3.266 20 H -0.205 1.205 21 H -0.212 1.212 22 H -0.196 1.196 23 C -0.069 4.069 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.072 0.928 34 H 0.086 0.914 35 H 0.074 0.926 36 H 0.102 0.898 37 H 0.052 0.948 38 H 0.056 0.944 39 H 0.055 0.945 40 H 0.019 0.981 41 H 0.020 0.980 42 H 0.072 0.928 43 H 0.040 0.960 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.735 0.740 17.207 18.153 hybrid contribution 0.300 -0.422 -0.198 0.554 sum -5.435 0.318 17.008 17.859 Atomic orbital electron populations 1.21786 0.95949 1.01204 1.01862 1.21523 0.95860 0.96464 1.01849 1.21200 0.95112 0.95611 0.98393 0.89852 1.21667 1.00301 0.95839 0.97363 1.21618 0.94568 0.97129 1.01568 1.21602 0.95734 0.95125 0.90183 0.95090 1.21904 1.00984 0.95849 1.01786 1.61813 1.13869 1.16398 1.32164 1.22177 0.87647 1.01692 0.95217 1.22356 0.95729 0.95553 0.88102 1.87974 1.71734 1.54174 1.15753 1.20171 0.95494 0.92545 0.79854 1.21063 1.29826 1.12761 0.91020 0.91522 1.24941 0.95755 0.95249 0.98621 1.69971 1.40582 1.23567 1.19927 0.86360 0.80062 0.79246 0.80981 1.20525 1.21158 1.19610 1.22197 0.94696 0.88964 1.00993 0.93131 0.92827 0.92513 0.91635 0.92547 0.92802 0.91878 0.92108 0.90867 0.92762 0.91399 0.92551 0.89784 0.94850 0.94403 0.94492 0.98079 0.98030 0.92781 0.95986 0.89577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.67 37.16 0.36 -1.22 16 2 C -0.12 -1.40 5.41 -26.73 -0.14 -1.55 16 3 C -0.08 -1.13 2.35 -90.54 -0.21 -1.34 16 4 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 5 C -0.11 -1.29 4.98 -26.61 -0.13 -1.42 16 6 C -0.11 -1.30 5.37 -26.65 -0.14 -1.44 16 7 C 0.08 1.05 2.44 -67.73 -0.17 0.89 16 8 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 9 C -0.15 -1.74 8.76 37.16 0.33 -1.42 16 10 N -0.52 -8.17 4.51 -226.69 -1.02 -9.19 16 11 C 0.06 0.95 4.84 -3.83 -0.02 0.94 16 12 C 0.06 1.16 5.56 37.16 0.21 1.37 16 13 O -0.38 -9.33 10.23 -35.23 -0.36 -9.69 16 14 C 0.19 5.43 5.69 36.01 0.20 5.63 16 15 C -0.51 -15.28 9.43 -34.44 -0.32 -15.60 16 16 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 17 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -27.37 13.29 55.43 0.74 -26.63 16 19 Si 0.91 22.25 29.54 -169.99 -5.02 17.23 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 23 C 0.06 0.89 4.32 -3.83 -0.02 0.88 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.05 0.51 6.62 -51.93 -0.34 0.16 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.65 6.70 -51.93 -0.35 0.30 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.06 0.66 6.41 -51.93 -0.33 0.32 16 36 H 0.08 1.34 6.45 -51.92 -0.34 1.00 16 37 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.04 0.69 6.05 -51.93 -0.31 0.38 16 40 H 0.00 0.04 8.14 -51.93 -0.42 -0.38 16 41 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 42 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 43 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 44 H 0.09 1.50 5.79 -51.93 -0.30 1.20 16 LS Contribution 337.58 15.07 5.09 5.09 Total: -1.00 -31.19 337.58 -9.02 -40.22 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -8.28 Total: -4.26 kcal Atomic # 6 Polarization: -12.61 SS G_CDS: -0.16 Total: -12.77 kcal Atomic # 7 Polarization: -35.53 SS G_CDS: -0.29 Total: -35.82 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: -0.36 Total: -9.69 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.19 -9.02 -40.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385255196.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.471 kcal (2) G-P(sol) polarization free energy of solvation -31.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds