Wall clock time and date at job start Mon Mar 30 2020 07:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47521 * 2 1 4 4 H 1.08993 * 109.50519 * 304.92425 * 3 2 1 5 5 C 1.53121 * 109.50111 * 65.00429 * 3 2 1 6 6 C 1.53120 * 109.15897 * 177.59384 * 5 3 2 7 7 C 1.53031 * 109.28018 * 302.34426 * 6 5 3 8 8 H 1.09003 * 109.46277 * 299.17159 * 7 6 5 9 9 C 1.52997 * 109.46186 * 179.19741 * 7 6 5 10 10 N 1.46847 * 109.52480 * 59.18077 * 7 6 5 11 11 C 1.46898 * 111.00035 * 174.16440 * 10 7 6 12 12 C 1.52997 * 109.47304 * 176.08599 * 11 10 7 13 13 O 1.42903 * 109.46937 * 62.29296 * 12 11 10 14 14 C 1.42901 * 113.99858 * 180.02562 * 13 12 11 15 15 C 1.50708 * 109.47148 * 179.97438 * 14 13 12 16 16 H 1.07997 * 119.99538 * 0.02562 * 15 14 13 17 17 C 1.37874 * 120.00197 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99684 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00083 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47431 * 89.99798 * 19 17 15 21 21 H 1.48496 * 109.46833 * 209.99925 * 19 17 15 22 22 H 1.48498 * 109.47011 * 329.99460 * 19 17 15 23 23 C 1.46853 * 111.19708 * 298.25960 * 10 7 6 24 24 H 1.08993 * 109.47798 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46842 * 299.99953 * 1 2 3 26 26 H 1.09002 * 109.47046 * 59.99201 * 1 2 3 27 27 H 1.09005 * 109.46842 * 240.00047 * 2 1 3 28 28 H 1.09002 * 109.47046 * 120.00799 * 2 1 3 29 29 H 1.09000 * 109.52296 * 57.68767 * 5 3 2 30 30 H 1.09002 * 109.56902 * 297.52731 * 5 3 2 31 31 H 1.09002 * 109.50228 * 182.40241 * 6 5 3 32 32 H 1.08999 * 109.53347 * 62.30866 * 6 5 3 33 33 H 1.08995 * 109.47580 * 59.99909 * 9 7 6 34 34 H 1.09000 * 109.47378 * 299.99662 * 9 7 6 35 35 H 1.09003 * 109.47122 * 179.97438 * 9 7 6 36 36 H 1.09008 * 109.46805 * 296.08505 * 11 10 7 37 37 H 1.09000 * 109.47353 * 56.08645 * 11 10 7 38 38 H 1.08992 * 109.47518 * 182.28988 * 12 11 10 39 39 H 1.09001 * 109.46965 * 302.29533 * 12 11 10 40 40 H 1.08998 * 109.47219 * 299.99709 * 14 13 12 41 41 H 1.08995 * 109.47192 * 60.00218 * 14 13 12 42 42 H 0.97007 * 119.99544 * 180.02562 * 18 17 15 43 43 H 1.09004 * 109.45793 * 301.72645 * 23 10 7 44 44 H 1.08998 * 109.45337 * 181.75550 * 23 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6069 1.9816 -0.8424 5 6 1.6355 2.1277 1.3082 6 6 2.2009 3.5505 1.3259 7 6 3.7218 3.4919 1.1667 8 1 4.1524 2.9306 1.9959 9 6 4.2892 4.9127 1.1638 10 7 4.0574 2.8284 -0.0996 11 6 5.5037 2.8769 -0.3522 12 6 5.8255 2.0937 -1.6265 13 8 5.1719 2.7063 -2.7399 14 6 5.4079 2.0484 -3.9863 15 6 4.6745 2.7746 -5.0845 16 1 4.0874 3.6512 -4.8537 17 6 4.7541 2.3207 -6.3840 18 7 5.4704 1.2542 -6.6652 19 14 3.8457 3.2213 -7.7452 20 1 4.7274 4.2690 -8.3198 21 1 3.4649 2.2570 -8.8083 22 1 2.6224 3.8539 -7.1896 23 6 3.5656 1.4448 -0.1208 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5140 -0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5140 0.8899 29 1 2.0355 1.5661 2.1524 30 1 0.5485 2.1668 1.3789 31 1 1.9524 4.0291 2.2732 32 1 1.7708 4.1239 0.5048 33 1 4.0410 5.4051 2.1040 34 1 3.8585 5.4744 0.3348 35 1 5.3726 4.8711 1.0508 36 1 5.8166 3.9140 -0.4744 37 1 6.0348 2.4340 0.4903 38 1 6.9028 2.0954 -1.7918 39 1 5.4758 1.0668 -1.5198 40 1 6.4766 2.0487 -4.2007 41 1 5.0493 1.0207 -3.9284 42 1 5.5266 0.9350 -7.5795 43 1 3.9970 0.8933 0.7146 44 1 3.8565 0.9705 -1.0581 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385255196.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:29 Heat of formation + Delta-G solvation = -87.112303 kcal Electronic energy + Delta-G solvation = -20048.953008 eV Core-core repulsion = 17192.531090 eV Total energy + Delta-G solvation = -2856.421918 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.65123 -38.46165 -36.36630 -34.97660 -33.90195 -31.54145 -30.36981 -28.79131 -27.68278 -25.25571 -24.47117 -23.76157 -22.38485 -21.16443 -20.56172 -18.61428 -17.42463 -17.41401 -16.48591 -16.20852 -15.93897 -15.76186 -15.39517 -15.06544 -14.63673 -14.47434 -14.35303 -13.72155 -13.64979 -13.56928 -13.02271 -12.96241 -12.90055 -12.76505 -12.60260 -12.42347 -12.24697 -12.12281 -11.94750 -11.80746 -11.65583 -11.44978 -11.27073 -11.03022 -10.89943 -10.82348 -10.17583 -9.07866 -8.32144 -6.43964 1.38614 1.41764 1.53973 2.34671 2.89799 3.01435 3.24611 3.79117 3.86354 3.91706 4.03022 4.22032 4.24061 4.30546 4.38819 4.42697 4.48295 4.53204 4.62961 4.67734 4.70868 4.77640 4.82286 4.88558 4.91735 4.99685 5.02594 5.03858 5.09349 5.13960 5.18499 5.24699 5.26559 5.33631 5.39697 5.53227 5.55334 5.60557 5.97216 6.22371 6.35620 6.56715 6.85724 7.28197 8.80357 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.018178 B = 0.005386 C = 0.004755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.941946 B = 5197.153607 C = 5886.627611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.117 4.117 3 C -0.082 4.082 4 H 0.051 0.949 5 C -0.107 4.107 6 C -0.110 4.110 7 C 0.080 3.920 8 H 0.045 0.955 9 C -0.145 4.145 10 N -0.544 5.544 11 C 0.069 3.931 12 C 0.052 3.948 13 O -0.391 6.391 14 C 0.210 3.790 15 C -0.544 4.544 16 H 0.058 0.942 17 C 0.007 3.993 18 N -0.931 5.931 19 Si 0.982 3.018 20 H -0.266 1.266 21 H -0.273 1.273 22 H -0.266 1.266 23 C 0.062 3.938 24 H 0.061 0.939 25 H 0.068 0.932 26 H 0.043 0.957 27 H 0.045 0.955 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.053 0.947 33 H 0.079 0.921 34 H 0.047 0.953 35 H 0.055 0.945 36 H 0.083 0.917 37 H 0.063 0.937 38 H 0.045 0.955 39 H 0.039 0.961 40 H -0.017 1.017 41 H -0.020 1.020 42 H 0.270 0.730 43 H 0.038 0.962 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.373 1.030 19.169 20.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.155 4.155 3 C -0.101 4.101 4 H 0.069 0.931 5 C -0.145 4.145 6 C -0.147 4.147 7 C -0.027 4.027 8 H 0.063 0.937 9 C -0.202 4.202 10 N -0.270 5.270 11 C -0.059 4.059 12 C -0.025 4.025 13 O -0.311 6.311 14 C 0.135 3.865 15 C -0.582 4.582 16 H 0.077 0.923 17 C -0.192 4.192 18 N -0.571 5.571 19 Si 0.804 3.196 20 H -0.191 1.191 21 H -0.198 1.198 22 H -0.191 1.191 23 C -0.066 4.066 24 H 0.080 0.920 25 H 0.087 0.913 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.106 0.894 32 H 0.072 0.928 33 H 0.098 0.902 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.101 0.899 37 H 0.081 0.919 38 H 0.063 0.937 39 H 0.057 0.943 40 H 0.000 1.000 41 H -0.002 1.002 42 H 0.079 0.921 43 H 0.056 0.944 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.656 1.342 18.679 19.875 hybrid contribution 0.640 -0.649 -0.588 1.085 sum -6.016 0.693 18.090 19.077 Atomic orbital electron populations 1.21764 0.94693 1.02018 1.01997 1.21504 0.96946 0.95345 1.01664 1.21156 0.93759 0.96518 0.98693 0.93071 1.21628 1.01214 0.95451 0.96159 1.21634 0.93596 0.97319 1.02179 1.21726 0.96687 0.95369 0.88968 0.93747 1.21888 1.00755 0.95203 1.02357 1.61798 1.13634 1.16945 1.34589 1.22089 0.88577 1.01182 0.94028 1.22689 0.95800 0.96274 0.87785 1.87928 1.72686 1.54557 1.15922 1.19771 0.93877 0.91464 0.81361 1.21354 1.31020 1.13280 0.92506 0.92330 1.25948 0.96210 0.95910 1.01096 1.70075 1.41241 1.24692 1.21069 0.85204 0.78772 0.78234 0.77343 1.19133 1.19763 1.19058 1.22114 0.95977 0.88796 0.99676 0.91997 0.91285 0.93762 0.93612 0.90918 0.91299 0.90514 0.89398 0.92808 0.90189 0.93347 0.92577 0.89893 0.91871 0.93654 0.94321 0.99951 1.00215 0.92070 0.94434 0.93119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 9.67 71.98 0.70 -2.22 16 2 C -0.12 -2.70 5.41 30.59 0.17 -2.53 16 3 C -0.08 -2.19 2.35 -10.74 -0.03 -2.22 16 4 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 5 C -0.11 -2.19 4.98 30.67 0.15 -2.03 16 6 C -0.11 -2.33 5.37 30.64 0.16 -2.17 16 7 C 0.08 1.91 2.44 44.93 0.11 2.02 16 8 H 0.04 0.96 8.14 -2.39 -0.02 0.95 16 9 C -0.14 -3.15 8.76 71.98 0.63 -2.52 16 10 N -0.54 -17.01 4.51 -871.11 -3.93 -20.93 16 11 C 0.07 2.14 4.84 86.30 0.42 2.56 16 12 C 0.05 2.04 5.56 71.98 0.40 2.44 16 13 O -0.39 -20.20 10.23 -148.98 -1.52 -21.72 16 14 C 0.21 12.37 5.69 71.24 0.41 12.77 16 15 C -0.54 -33.70 9.43 25.60 0.24 -33.45 16 16 H 0.06 3.63 7.81 -2.91 -0.02 3.61 16 17 C 0.01 0.39 5.46 84.65 0.46 0.85 16 18 N -0.93 -57.36 13.29 21.45 0.28 -57.08 16 19 Si 0.98 45.69 29.54 68.60 2.03 47.71 16 20 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 21 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 22 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 23 C 0.06 1.88 4.32 86.32 0.37 2.25 16 24 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.07 1.15 6.62 -2.38 -0.02 1.13 16 26 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 28 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.08 1.37 6.70 -2.39 -0.02 1.36 16 31 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.05 1.23 8.14 -2.39 -0.02 1.22 16 35 H 0.06 1.21 6.41 -2.39 -0.02 1.19 16 36 H 0.08 2.60 6.45 -2.38 -0.02 2.59 16 37 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.04 1.51 6.05 -2.39 -0.01 1.50 16 40 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 41 H -0.02 -1.22 8.14 -2.39 -0.02 -1.24 16 42 H 0.27 15.39 8.31 -92.70 -0.77 14.62 16 43 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.05 1.87 5.79 -2.39 -0.01 1.86 16 Total: -1.00 -68.60 337.58 1.98 -66.61 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: 0.93 Total: 9.65 kcal Atomic # 6 Polarization: -28.44 SS G_CDS: 4.19 Total: -24.25 kcal Atomic # 7 Polarization: -74.37 SS G_CDS: -3.64 Total: -78.01 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -1.52 Total: -21.72 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.71 kcal Total: -68.60 1.98 -66.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385255196.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.498 kcal (2) G-P(sol) polarization free energy of solvation -68.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds