Wall clock time and date at job start Mon Mar 30 2020 07:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47152 * 2 1 4 4 H 1.08999 * 110.54017 * 52.38948 * 3 2 1 5 5 C 1.54888 * 110.48770 * 289.77771 * 3 2 1 6 6 C 1.54891 * 102.75120 * 203.38058 * 5 3 2 7 7 C 1.54267 * 104.19324 * 37.94011 * 6 5 3 8 8 H 1.08998 * 110.03405 * 95.67701 * 7 6 5 9 9 N 1.46898 * 110.03136 * 217.10789 * 7 6 5 10 10 C 1.46903 * 110.99931 * 272.16595 * 9 7 6 11 11 C 1.53005 * 109.47026 * 179.97438 * 10 9 7 12 12 O 1.42894 * 109.47113 * 65.00141 * 11 10 9 13 13 C 1.42898 * 114.00391 * 179.97438 * 12 11 10 14 14 C 1.50690 * 109.47730 * 179.97438 * 13 12 11 15 15 H 1.08012 * 119.99787 * 0.02562 * 14 13 12 16 16 C 1.37870 * 120.00550 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00007 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00436 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.46825 * 60.00046 * 18 16 14 20 20 H 1.48496 * 109.47412 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47040 * 300.00365 * 18 16 14 22 22 C 1.53876 * 106.59870 * 336.39035 * 7 6 5 23 23 H 1.08999 * 110.02894 * 240.66545 * 22 7 6 24 24 C 1.53006 * 110.02764 * 119.28655 * 22 7 6 25 25 H 1.08992 * 109.47315 * 59.99710 * 1 2 3 26 26 H 1.09000 * 109.47415 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46817 * 299.99653 * 1 2 3 28 28 H 1.09002 * 109.46687 * 239.99821 * 2 1 3 29 29 H 1.08999 * 109.47009 * 120.00490 * 2 1 3 30 30 H 1.09005 * 110.75648 * 321.69288 * 5 3 2 31 31 H 1.09004 * 110.75897 * 84.87739 * 5 3 2 32 32 H 1.09004 * 110.48613 * 279.26383 * 6 5 3 33 33 H 1.08994 * 110.48745 * 156.61801 * 6 5 3 34 34 H 1.00899 * 111.00284 * 148.21562 * 9 7 6 35 35 H 1.08990 * 109.47510 * 300.00161 * 10 9 7 36 36 H 1.09005 * 109.46706 * 60.00240 * 10 9 7 37 37 H 1.09005 * 109.46852 * 185.00164 * 11 10 9 38 38 H 1.08997 * 109.46957 * 304.99858 * 11 10 9 39 39 H 1.09000 * 109.47232 * 300.00773 * 13 12 11 40 40 H 1.09001 * 109.46788 * 60.00125 * 13 12 11 41 41 H 0.96993 * 120.00350 * 180.02562 * 17 16 14 42 42 H 1.08997 * 109.47188 * 61.45757 * 24 22 7 43 43 H 1.09004 * 109.46482 * 181.45032 * 24 22 7 44 44 H 1.08994 * 109.46940 * 301.44815 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5802 2.0106 0.8086 5 6 1.7579 2.1172 -1.3653 6 6 2.8153 3.2480 -1.4128 7 6 4.0702 2.6196 -0.7724 8 1 4.7298 2.2301 -1.5477 9 7 4.7785 3.6217 0.0350 10 6 5.7363 4.3764 -0.7841 11 6 6.4525 5.4084 0.0894 12 8 7.2429 4.7351 1.0712 13 6 7.9576 5.6126 1.9436 14 6 8.7522 4.7999 2.9330 15 1 8.7154 3.7210 2.8988 16 6 9.5261 5.4335 3.8820 17 7 9.5705 6.7472 3.9241 18 14 10.5116 4.4260 5.1080 19 1 11.4743 3.5622 4.3784 20 1 11.2533 5.3379 6.0155 21 1 9.5903 3.5769 5.9051 22 6 3.5772 1.4716 0.1259 23 1 3.8644 1.6577 1.1608 24 6 4.1674 0.1428 -0.3506 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.9090 1.4125 -2.1831 31 1 0.7482 2.5272 -1.3923 32 1 2.4807 4.1078 -0.8324 33 1 3.0177 3.5379 -2.4438 34 1 5.2376 3.1916 0.8240 35 1 6.4682 3.6910 -1.2114 36 1 5.2045 4.8869 -1.5871 37 1 7.0975 6.0274 -0.5343 38 1 5.7147 6.0383 0.5864 39 1 8.6338 6.2356 1.3582 40 1 7.2513 6.2470 2.4792 41 1 10.1152 7.1930 4.5914 42 1 5.2545 0.1823 -0.2808 43 1 3.7923 -0.6667 0.2756 44 1 3.8759 -0.0337 -1.3859 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385839588.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:40:59 Heat of formation + Delta-G solvation = -81.168794 kcal Electronic energy + Delta-G solvation = -19266.297541 eV Core-core repulsion = 16410.133353 eV Total energy + Delta-G solvation = -2856.164188 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.50872 -36.97732 -35.02952 -32.82532 -32.17797 -31.20382 -28.81442 -26.89726 -26.16484 -24.40690 -22.93218 -22.32369 -21.28816 -20.18427 -18.82909 -16.41401 -16.17970 -15.77007 -15.22654 -14.96266 -14.84684 -14.51802 -14.30234 -13.58026 -13.49229 -13.25117 -13.06298 -12.68934 -12.41364 -12.09489 -11.78926 -11.70624 -11.52543 -11.33253 -11.23548 -10.85173 -10.81294 -10.66583 -10.63104 -10.57531 -10.50842 -10.28965 -10.25857 -9.95691 -9.10476 -8.80380 -8.15434 -8.12912 -6.09637 -4.11576 3.32617 3.35311 3.39040 4.35509 4.37613 4.45149 4.53884 4.71199 4.97413 5.04369 5.17232 5.22153 5.26611 5.30068 5.37391 5.41364 5.52207 5.53903 5.59851 5.65763 5.73892 5.80582 5.82283 5.83197 5.90308 5.95521 6.03249 6.06576 6.14359 6.18363 6.22813 6.29344 6.32032 6.43028 6.44119 7.13350 7.36622 7.45973 7.73895 7.79860 8.16914 8.59837 9.01380 9.53202 11.01883 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.027069 B = 0.003698 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.146211 B = 7570.088516 C = 8216.482692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.084 4.084 4 H 0.075 0.925 5 C -0.117 4.117 6 C -0.115 4.115 7 C 0.086 3.914 8 H 0.044 0.956 9 N -0.681 5.681 10 C 0.066 3.934 11 C 0.062 3.938 12 O -0.399 6.399 13 C 0.198 3.802 14 C -0.515 4.515 15 H 0.065 0.935 16 C 0.056 3.944 17 N -0.899 5.899 18 Si 0.908 3.092 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.275 1.275 22 C -0.096 4.096 23 H 0.079 0.921 24 C -0.146 4.146 25 H 0.053 0.947 26 H 0.049 0.951 27 H 0.052 0.948 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.056 0.944 34 H 0.355 0.645 35 H 0.032 0.968 36 H 0.073 0.927 37 H 0.039 0.961 38 H 0.046 0.954 39 H 0.003 0.997 40 H 0.006 0.994 41 H 0.264 0.736 42 H 0.052 0.948 43 H 0.058 0.942 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.980 -10.855 -10.951 22.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.103 4.103 4 H 0.094 0.906 5 C -0.155 4.155 6 C -0.153 4.153 7 C -0.025 4.025 8 H 0.062 0.938 9 N -0.315 5.315 10 C -0.063 4.063 11 C -0.016 4.016 12 O -0.319 6.319 13 C 0.123 3.877 14 C -0.553 4.553 15 H 0.083 0.917 16 C -0.145 4.145 17 N -0.538 5.538 18 Si 0.735 3.265 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.200 1.200 22 C -0.114 4.114 23 H 0.097 0.903 24 C -0.203 4.203 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.075 0.925 34 H 0.175 0.825 35 H 0.050 0.950 36 H 0.091 0.909 37 H 0.057 0.943 38 H 0.064 0.936 39 H 0.021 0.979 40 H 0.024 0.976 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.077 0.923 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.354 -10.425 -10.882 22.239 hybrid contribution 1.322 -0.628 0.511 1.550 sum -15.032 -11.054 -10.371 21.347 Atomic orbital electron populations 1.21805 0.96275 1.01182 1.01784 1.21656 0.95361 0.96562 1.01894 1.21980 0.94747 0.95626 0.97897 0.90629 1.22531 0.98618 0.97428 0.96878 1.22427 0.94606 0.98432 0.99841 1.22240 0.95103 0.90691 0.94418 0.93809 1.60656 1.31734 1.28270 1.10804 1.21976 0.92905 0.96159 0.95273 1.22298 0.93583 0.94307 0.91390 1.87781 1.62692 1.35609 1.45858 1.20158 0.90131 0.89747 0.87618 1.21016 1.26582 0.93928 1.13822 0.91695 1.24948 0.96803 0.95091 0.97656 1.69953 1.40543 1.07636 1.35648 0.86398 0.79901 0.79641 0.80540 1.20060 1.21154 1.19996 1.21951 0.95087 0.94376 1.00028 0.90262 1.21955 1.00525 0.96891 1.00939 0.92771 0.93161 0.92853 0.91806 0.92013 0.91928 0.91864 0.90395 0.92504 0.82492 0.94952 0.90891 0.94297 0.93605 0.97875 0.97646 0.92600 0.92892 0.92268 0.92794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.79 37.16 0.36 -0.79 16 2 C -0.12 -0.99 4.11 -26.73 -0.11 -1.10 16 3 C -0.08 -0.82 2.77 -88.97 -0.25 -1.07 16 4 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 5 C -0.12 -1.09 5.67 -24.74 -0.14 -1.23 16 6 C -0.11 -1.27 6.49 -25.07 -0.16 -1.43 16 7 C 0.09 1.06 2.90 -66.59 -0.19 0.87 16 8 H 0.04 0.56 7.34 -51.93 -0.38 0.18 16 9 N -0.68 -10.39 6.27 -105.54 -0.66 -11.06 16 10 C 0.07 1.04 5.93 -3.82 -0.02 1.01 16 11 C 0.06 1.19 6.28 37.16 0.23 1.42 16 12 O -0.40 -9.68 9.85 -35.23 -0.35 -10.03 16 13 C 0.20 5.51 5.69 36.00 0.20 5.71 16 14 C -0.52 -15.31 9.43 -34.45 -0.32 -15.64 16 15 H 0.06 1.90 7.81 -52.48 -0.41 1.49 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 17 N -0.90 -27.18 13.29 55.43 0.74 -26.45 16 18 Si 0.91 21.98 29.54 -169.99 -5.02 16.96 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 22 C -0.10 -1.07 3.11 -89.50 -0.28 -1.35 16 23 H 0.08 1.00 7.47 -51.93 -0.39 0.62 16 24 C -0.15 -1.47 7.73 37.16 0.29 -1.19 16 25 H 0.05 0.39 7.55 -51.93 -0.39 0.00 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.52 6.83 -51.93 -0.35 0.16 16 29 H 0.06 0.53 7.40 -51.93 -0.38 0.14 16 30 H 0.06 0.55 7.97 -51.93 -0.41 0.14 16 31 H 0.06 0.55 8.05 -51.93 -0.42 0.13 16 32 H 0.08 0.95 8.05 -51.93 -0.42 0.54 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.35 6.03 7.57 -39.29 -0.30 5.73 16 35 H 0.03 0.52 8.07 -51.93 -0.42 0.10 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 16 40 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 41 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 42 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.54 6.62 -51.93 -0.34 0.20 16 44 H 0.05 0.50 7.63 -51.93 -0.40 0.11 16 LS Contribution 343.71 15.07 5.18 5.18 Total: -1.00 -30.22 343.71 -8.98 -39.20 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -8.38 Total: -0.58 kcal Atomic # 6 Polarization: -12.74 SS G_CDS: -0.49 Total: -13.23 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: 0.08 Total: -37.50 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: -0.35 Total: -10.03 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.22 -8.98 -39.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385839588.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.972 kcal (2) G-P(sol) polarization free energy of solvation -30.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds