Wall clock time and date at job start Mon Mar 30 2020 07:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47152 * 2 1 4 4 H 1.08999 * 110.54017 * 52.38948 * 3 2 1 5 5 C 1.54888 * 110.48770 * 289.77771 * 3 2 1 6 6 C 1.54891 * 102.75120 * 203.38058 * 5 3 2 7 7 C 1.54267 * 104.19324 * 37.94011 * 6 5 3 8 8 H 1.08998 * 110.03405 * 95.67701 * 7 6 5 9 9 N 1.46898 * 110.03136 * 217.10789 * 7 6 5 10 10 C 1.46903 * 110.99931 * 272.16595 * 9 7 6 11 11 C 1.53005 * 109.47026 * 179.97438 * 10 9 7 12 12 O 1.42894 * 109.47113 * 65.00141 * 11 10 9 13 13 C 1.42898 * 114.00391 * 179.97438 * 12 11 10 14 14 C 1.50690 * 109.47730 * 179.97438 * 13 12 11 15 15 H 1.08012 * 119.99787 * 0.02562 * 14 13 12 16 16 C 1.37870 * 120.00550 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00007 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00436 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.46825 * 60.00046 * 18 16 14 20 20 H 1.48496 * 109.47412 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47040 * 300.00365 * 18 16 14 22 22 C 1.53876 * 106.59870 * 336.39035 * 7 6 5 23 23 H 1.08999 * 110.02894 * 240.66545 * 22 7 6 24 24 C 1.53006 * 110.02764 * 119.28655 * 22 7 6 25 25 H 1.08992 * 109.47315 * 59.99710 * 1 2 3 26 26 H 1.09000 * 109.47415 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46817 * 299.99653 * 1 2 3 28 28 H 1.09002 * 109.46687 * 239.99821 * 2 1 3 29 29 H 1.08999 * 109.47009 * 120.00490 * 2 1 3 30 30 H 1.09005 * 110.75648 * 321.69288 * 5 3 2 31 31 H 1.09004 * 110.75897 * 84.87739 * 5 3 2 32 32 H 1.09004 * 110.48613 * 279.26383 * 6 5 3 33 33 H 1.08994 * 110.48745 * 156.61801 * 6 5 3 34 34 H 1.00899 * 111.00284 * 148.21562 * 9 7 6 35 35 H 1.08990 * 109.47510 * 300.00161 * 10 9 7 36 36 H 1.09005 * 109.46706 * 60.00240 * 10 9 7 37 37 H 1.09005 * 109.46852 * 185.00164 * 11 10 9 38 38 H 1.08997 * 109.46957 * 304.99858 * 11 10 9 39 39 H 1.09000 * 109.47232 * 300.00773 * 13 12 11 40 40 H 1.09001 * 109.46788 * 60.00125 * 13 12 11 41 41 H 0.96993 * 120.00350 * 180.02562 * 17 16 14 42 42 H 1.08997 * 109.47188 * 61.45757 * 24 22 7 43 43 H 1.09004 * 109.46482 * 181.45032 * 24 22 7 44 44 H 1.08994 * 109.46940 * 301.44815 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5802 2.0106 0.8086 5 6 1.7579 2.1172 -1.3653 6 6 2.8153 3.2480 -1.4128 7 6 4.0702 2.6196 -0.7724 8 1 4.7298 2.2301 -1.5477 9 7 4.7785 3.6217 0.0350 10 6 5.7363 4.3764 -0.7841 11 6 6.4525 5.4084 0.0894 12 8 7.2429 4.7351 1.0712 13 6 7.9576 5.6126 1.9436 14 6 8.7522 4.7999 2.9330 15 1 8.7154 3.7210 2.8988 16 6 9.5261 5.4335 3.8820 17 7 9.5705 6.7472 3.9241 18 14 10.5116 4.4260 5.1080 19 1 11.4743 3.5622 4.3784 20 1 11.2533 5.3379 6.0155 21 1 9.5903 3.5769 5.9051 22 6 3.5772 1.4716 0.1259 23 1 3.8644 1.6577 1.1608 24 6 4.1674 0.1428 -0.3506 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.9090 1.4125 -2.1831 31 1 0.7482 2.5272 -1.3923 32 1 2.4807 4.1078 -0.8324 33 1 3.0177 3.5379 -2.4438 34 1 5.2376 3.1916 0.8240 35 1 6.4682 3.6910 -1.2114 36 1 5.2045 4.8869 -1.5871 37 1 7.0975 6.0274 -0.5343 38 1 5.7147 6.0383 0.5864 39 1 8.6338 6.2356 1.3582 40 1 7.2513 6.2470 2.4792 41 1 10.1152 7.1930 4.5914 42 1 5.2545 0.1823 -0.2808 43 1 3.7923 -0.6667 0.2756 44 1 3.8759 -0.0337 -1.3859 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385839588.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:40:59 Heat of formation + Delta-G solvation = -99.449773 kcal Electronic energy + Delta-G solvation = -19267.090263 eV Core-core repulsion = 16410.133353 eV Total energy + Delta-G solvation = -2856.956910 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.41977 -38.74107 -36.26772 -34.89235 -33.23813 -32.03828 -30.33295 -28.76937 -27.11192 -25.43308 -24.52768 -23.65615 -22.67398 -21.10110 -19.69059 -18.63491 -17.56512 -17.20145 -16.53226 -16.42303 -16.19548 -15.91911 -15.27802 -15.03454 -14.86826 -14.26132 -14.09887 -13.78579 -13.58571 -13.31341 -13.12231 -13.06807 -12.74043 -12.64570 -12.59475 -12.41343 -12.17689 -12.12971 -11.77708 -11.61873 -11.50754 -11.31756 -11.27534 -11.15790 -11.05700 -10.87436 -10.25065 -9.33141 -8.33142 -6.46101 1.39126 1.44133 1.52551 2.33721 3.00550 3.17944 3.24005 3.59915 3.69439 3.91257 4.17985 4.29947 4.32969 4.41710 4.47605 4.50004 4.52682 4.57330 4.61157 4.68589 4.74930 4.77644 4.81975 4.88318 4.92870 5.01673 5.08070 5.11941 5.16308 5.18273 5.20495 5.24796 5.32776 5.41900 5.43641 5.52945 5.53189 5.65191 5.94173 6.21023 6.43235 6.51623 6.79622 7.25868 8.79132 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.027069 B = 0.003698 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.146211 B = 7570.088516 C = 8216.482692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.114 4.114 3 C -0.081 4.081 4 H 0.064 0.936 5 C -0.109 4.109 6 C -0.113 4.113 7 C 0.083 3.917 8 H 0.044 0.956 9 N -0.690 5.690 10 C 0.077 3.923 11 C 0.055 3.945 12 O -0.409 6.409 13 C 0.212 3.788 14 C -0.550 4.550 15 H 0.062 0.938 16 C 0.006 3.994 17 N -0.931 5.931 18 Si 0.984 3.016 19 H -0.265 1.265 20 H -0.275 1.275 21 H -0.265 1.265 22 C -0.097 4.097 23 H 0.058 0.942 24 C -0.141 4.141 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.048 0.952 28 H 0.071 0.929 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.341 0.659 35 H 0.030 0.970 36 H 0.101 0.899 37 H 0.048 0.952 38 H 0.042 0.958 39 H -0.015 1.015 40 H -0.016 1.016 41 H 0.271 0.729 42 H 0.039 0.961 43 H 0.068 0.932 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.545 -12.359 -11.453 23.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.151 4.151 3 C -0.100 4.100 4 H 0.082 0.918 5 C -0.146 4.146 6 C -0.151 4.151 7 C -0.026 4.026 8 H 0.062 0.938 9 N -0.322 5.322 10 C -0.052 4.052 11 C -0.022 4.022 12 O -0.329 6.329 13 C 0.137 3.863 14 C -0.587 4.587 15 H 0.081 0.919 16 C -0.193 4.193 17 N -0.570 5.570 18 Si 0.807 3.193 19 H -0.190 1.190 20 H -0.200 1.200 21 H -0.190 1.190 22 C -0.116 4.116 23 H 0.077 0.923 24 C -0.198 4.198 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.067 0.933 28 H 0.090 0.910 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.159 0.841 35 H 0.049 0.951 36 H 0.119 0.881 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.002 0.998 40 H 0.001 0.999 41 H 0.080 0.920 42 H 0.058 0.942 43 H 0.087 0.913 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -16.945 -11.929 -11.415 23.659 hybrid contribution 1.445 -0.105 0.612 1.573 sum -15.500 -12.034 -10.803 22.400 Atomic orbital electron populations 1.21793 0.95491 1.01797 1.01837 1.21623 0.96007 0.95365 1.02115 1.21943 0.93382 0.96667 0.97966 0.91784 1.22502 0.98540 0.96867 0.96739 1.22404 0.94296 0.98495 0.99905 1.22367 0.95352 0.90599 0.94283 0.93774 1.60728 1.31335 1.29289 1.10884 1.21921 0.92963 0.95448 0.94912 1.22600 0.93268 0.95582 0.90774 1.87748 1.63017 1.35629 1.46462 1.19782 0.89411 0.89495 0.87619 1.21360 1.28015 0.94081 1.15259 0.91932 1.25989 0.97501 0.96371 0.99437 1.70066 1.41046 1.09446 1.36478 0.85216 0.78284 0.78088 0.77716 1.18953 1.19965 1.18962 1.21946 0.96385 0.94614 0.98609 0.92346 1.21917 0.99589 0.96448 1.01856 0.92271 0.92292 0.93272 0.91033 0.92332 0.90711 0.90815 0.91799 0.91481 0.84059 0.95147 0.88131 0.93426 0.93969 0.99756 0.99852 0.92003 0.94197 0.91278 0.91542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.79 71.98 0.70 -1.28 16 2 C -0.11 -1.70 4.11 30.59 0.13 -1.57 16 3 C -0.08 -1.48 2.77 -9.72 -0.03 -1.51 16 4 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 5 C -0.11 -1.79 5.67 31.89 0.18 -1.61 16 6 C -0.11 -2.31 6.49 31.67 0.21 -2.11 16 7 C 0.08 2.01 2.90 45.64 0.13 2.14 16 8 H 0.04 1.07 7.34 -2.39 -0.02 1.05 16 9 N -0.69 -21.12 6.27 -487.82 -3.06 -24.18 16 10 C 0.08 2.37 5.93 86.30 0.51 2.88 16 11 C 0.05 2.13 6.28 71.98 0.45 2.58 16 12 O -0.41 -20.35 9.85 -148.98 -1.47 -21.82 16 13 C 0.21 12.23 5.69 71.23 0.41 12.63 16 14 C -0.55 -33.27 9.43 25.60 0.24 -33.03 16 15 H 0.06 3.72 7.81 -2.90 -0.02 3.70 16 16 C 0.01 0.32 5.46 84.65 0.46 0.79 16 17 N -0.93 -56.85 13.29 21.45 0.28 -56.56 16 18 Si 0.98 44.79 29.54 68.60 2.03 46.81 16 19 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 20 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 21 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 22 C -0.10 -2.12 3.11 -10.07 -0.03 -2.16 16 23 H 0.06 1.53 7.47 -2.39 -0.02 1.51 16 24 C -0.14 -2.68 7.73 71.98 0.56 -2.13 16 25 H 0.06 0.72 7.55 -2.39 -0.02 0.70 16 26 H 0.06 0.67 8.14 -2.39 -0.02 0.66 16 27 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 28 H 0.07 0.97 6.83 -2.39 -0.02 0.95 16 29 H 0.06 0.91 7.40 -2.39 -0.02 0.90 16 30 H 0.07 1.08 7.97 -2.38 -0.02 1.06 16 31 H 0.07 1.09 8.05 -2.38 -0.02 1.07 16 32 H 0.06 1.50 8.05 -2.38 -0.02 1.48 16 33 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.34 11.94 7.57 -89.70 -0.68 11.26 16 35 H 0.03 0.95 8.07 -2.39 -0.02 0.93 16 36 H 0.10 2.56 8.14 -2.38 -0.02 2.54 16 37 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 38 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 39 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 40 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 41 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 42 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.07 1.17 6.62 -2.38 -0.02 1.15 16 44 H 0.07 1.10 7.63 -2.39 -0.02 1.08 16 Total: -1.00 -64.98 343.71 1.97 -63.02 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: 0.26 Total: 17.11 kcal Atomic # 6 Polarization: -28.29 SS G_CDS: 3.92 Total: -24.37 kcal Atomic # 7 Polarization: -77.97 SS G_CDS: -2.77 Total: -80.75 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: -1.47 Total: -21.82 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal Total: -64.98 1.97 -63.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385839588.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.431 kcal (2) G-P(sol) polarization free energy of solvation -64.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds