Wall clock time and date at job start Mon Mar 30 2020 07:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47038 * 2 1 4 4 H 1.08998 * 110.05499 * 53.58535 * 3 2 1 5 5 C 1.54267 * 110.03137 * 292.16780 * 3 2 1 6 6 C 1.54891 * 104.19324 * 217.10706 * 5 3 2 7 7 C 1.54888 * 102.75120 * 37.94011 * 6 5 3 8 8 H 1.09000 * 110.48622 * 203.37816 * 7 6 5 9 9 N 1.46898 * 110.48313 * 80.73624 * 7 6 5 10 10 C 1.46905 * 111.00055 * 90.22655 * 9 7 6 11 11 C 1.53002 * 109.47174 * 179.97438 * 10 9 7 12 12 O 1.42905 * 109.47033 * 65.00355 * 11 10 9 13 13 C 1.42898 * 113.99911 * 179.97438 * 12 11 10 14 14 C 1.50702 * 109.46679 * 179.97438 * 13 12 11 15 15 H 1.07993 * 120.00464 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99553 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00070 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99816 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47353 * 90.00194 * 18 16 14 20 20 H 1.48506 * 109.47199 * 209.99764 * 18 16 14 21 21 H 1.48500 * 109.47433 * 329.99756 * 18 16 14 22 22 C 1.53876 * 110.03160 * 175.00197 * 3 2 1 23 23 H 1.08997 * 110.02757 * 238.61684 * 22 3 2 24 24 C 1.53003 * 110.03313 * 359.97438 * 22 3 2 25 25 H 1.09002 * 109.47375 * 60.00280 * 1 2 3 26 26 H 1.09004 * 109.46847 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47143 * 300.00136 * 1 2 3 28 28 H 1.08998 * 109.47143 * 239.99864 * 2 1 3 29 29 H 1.08998 * 109.46916 * 120.00308 * 2 1 3 30 30 H 1.09004 * 110.48597 * 335.78345 * 5 3 2 31 31 H 1.08994 * 110.48679 * 98.42871 * 5 3 2 32 32 H 1.09005 * 110.75269 * 279.62515 * 6 5 3 33 33 H 1.08999 * 110.75712 * 156.25949 * 6 5 3 34 34 H 1.00897 * 111.00549 * 326.27589 * 9 7 6 35 35 H 1.08998 * 109.46863 * 299.99952 * 10 9 7 36 36 H 1.09004 * 109.47008 * 59.99822 * 10 9 7 37 37 H 1.08998 * 109.46866 * 184.99540 * 11 10 9 38 38 H 1.08997 * 109.47499 * 305.00047 * 11 10 9 39 39 H 1.08995 * 109.46991 * 299.99675 * 13 12 11 40 40 H 1.08997 * 109.46887 * 60.00046 * 13 12 11 41 41 H 0.97004 * 119.99732 * 180.02562 * 17 16 14 42 42 H 1.09003 * 109.46816 * 59.99934 * 24 22 3 43 43 H 1.08999 * 109.46961 * 180.02562 * 24 22 3 44 44 H 1.09004 * 109.46525 * 300.00282 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5915 1.9975 0.8240 5 6 1.7005 2.1230 -1.3422 6 6 2.9289 3.0200 -1.6346 7 6 4.1124 2.1496 -1.1440 8 1 4.9718 2.7752 -0.9028 9 7 4.4711 1.1504 -2.1593 10 6 5.4876 1.6768 -3.0800 11 6 5.8351 0.6099 -4.1202 12 8 4.6896 0.3459 -4.9327 13 6 4.9083 -0.6413 -5.9425 14 6 3.6414 -0.8390 -6.7343 15 1 2.7576 -0.2682 -6.4906 16 6 3.6107 -1.7487 -7.7700 17 7 4.6869 -2.4441 -8.0665 18 14 2.0407 -1.9932 -8.7521 19 1 2.0263 -1.0563 -9.9041 20 1 1.9810 -3.3910 -9.2501 21 1 0.8665 -1.7270 -7.8828 22 6 3.5735 1.4594 0.1259 23 1 3.8691 2.0219 1.0115 24 6 4.1081 0.0284 0.2124 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.5772 1.3772 -2.1276 31 1 0.7998 2.7291 -1.2456 32 1 2.8720 3.9495 -1.0679 33 1 3.0144 3.2220 -2.7023 34 1 3.6547 0.8373 -2.6629 35 1 5.0986 2.5621 -3.5830 36 1 6.3836 1.9420 -2.5188 37 1 6.6514 0.9669 -4.7481 38 1 6.1400 -0.3058 -3.6136 39 1 5.7052 -0.3099 -6.6080 40 1 5.1942 -1.5830 -5.4740 41 1 4.6654 -3.0838 -8.7954 42 1 3.8285 -0.5188 -0.6879 43 1 5.1942 0.0511 0.3017 44 1 3.6822 -0.4663 1.0854 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385839606.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:02 Heat of formation + Delta-G solvation = -76.203717 kcal Electronic energy + Delta-G solvation = -19826.252619 eV Core-core repulsion = 16970.303734 eV Total energy + Delta-G solvation = -2855.948886 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.61657 -36.91361 -34.82204 -32.78674 -31.99496 -31.19057 -28.61510 -26.89291 -25.79066 -24.73766 -22.70822 -22.35029 -21.46580 -20.02692 -18.41120 -16.55468 -16.26229 -15.61952 -15.28645 -14.75217 -14.56761 -14.42510 -14.23485 -13.91348 -13.35151 -13.17130 -13.00790 -12.43650 -12.21855 -11.93624 -11.82213 -11.48184 -11.27172 -11.22277 -10.95552 -10.83711 -10.81591 -10.75147 -10.66417 -10.52422 -10.34497 -10.16822 -10.07565 -9.90937 -9.09632 -8.80991 -8.15513 -8.05740 -6.10175 -4.11861 3.30227 3.35353 3.40413 4.35172 4.37992 4.57515 4.66164 4.86075 4.97793 5.23032 5.26346 5.26492 5.35533 5.42368 5.51294 5.54568 5.62088 5.68753 5.71710 5.76344 5.79239 5.84305 5.95488 5.98293 6.06844 6.12630 6.15045 6.19263 6.24465 6.27001 6.39884 6.41051 6.45525 6.51399 6.77660 7.13125 7.36851 7.45661 7.75765 7.79799 8.16543 8.59517 9.01418 9.52995 11.01344 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.019471 B = 0.004933 C = 0.004341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.660727 B = 5674.490360 C = 6448.082974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.087 4.087 4 H 0.064 0.936 5 C -0.118 4.118 6 C -0.157 4.157 7 C 0.086 3.914 8 H 0.073 0.927 9 N -0.672 5.672 10 C 0.065 3.935 11 C 0.062 3.938 12 O -0.399 6.399 13 C 0.198 3.802 14 C -0.514 4.514 15 H 0.065 0.935 16 C 0.057 3.943 17 N -0.898 5.898 18 Si 0.906 3.094 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.272 1.272 22 C -0.083 4.083 23 H 0.064 0.936 24 C -0.127 4.127 25 H 0.054 0.946 26 H 0.051 0.949 27 H 0.047 0.953 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.355 0.645 35 H 0.032 0.968 36 H 0.073 0.927 37 H 0.038 0.962 38 H 0.046 0.954 39 H 0.003 0.997 40 H 0.006 0.994 41 H 0.264 0.736 42 H 0.073 0.927 43 H 0.047 0.953 44 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.943 8.419 16.889 19.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.105 4.105 4 H 0.082 0.918 5 C -0.156 4.156 6 C -0.196 4.196 7 C -0.025 4.025 8 H 0.091 0.909 9 N -0.304 5.304 10 C -0.064 4.064 11 C -0.016 4.016 12 O -0.319 6.319 13 C 0.123 3.877 14 C -0.552 4.552 15 H 0.083 0.917 16 C -0.145 4.145 17 N -0.537 5.537 18 Si 0.734 3.266 19 H -0.205 1.205 20 H -0.211 1.211 21 H -0.196 1.196 22 C -0.102 4.102 23 H 0.082 0.918 24 C -0.184 4.184 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.176 0.824 35 H 0.050 0.950 36 H 0.091 0.909 37 H 0.056 0.944 38 H 0.064 0.936 39 H 0.021 0.979 40 H 0.023 0.977 41 H 0.073 0.927 42 H 0.092 0.908 43 H 0.066 0.934 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -2.589 8.034 17.175 19.137 hybrid contribution -0.957 0.362 -1.211 1.586 sum -3.546 8.396 15.963 18.382 Atomic orbital electron populations 1.21824 0.96607 1.01307 1.01390 1.21768 0.94996 0.96338 1.02584 1.21814 0.95251 0.96077 0.97361 0.91790 1.22439 0.97319 0.98569 0.97274 1.23170 0.96568 0.98603 1.01235 1.22364 0.95902 0.91508 0.92719 0.90865 1.60611 1.16327 1.36602 1.16851 1.21975 0.95563 0.96115 0.92760 1.22297 0.89991 0.97361 0.91927 1.87786 1.33937 1.62138 1.48027 1.20160 0.97275 0.85536 0.84703 1.21046 0.97344 1.22200 1.14619 0.91676 1.24940 0.96996 0.95430 0.97096 1.69967 1.28145 1.25493 1.30134 0.86361 0.82914 0.77335 0.80020 1.20509 1.21064 1.19649 1.21802 0.94171 0.97603 0.96601 0.91753 1.21688 1.00022 0.95386 1.01322 0.92716 0.93037 0.93384 0.91019 0.91841 0.91038 0.92188 0.91652 0.91462 0.82403 0.94965 0.90899 0.94356 0.93622 0.97906 0.97651 0.92675 0.90769 0.93415 0.94138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.77 37.16 0.36 -1.19 16 2 C -0.12 -1.29 4.11 -26.73 -0.11 -1.40 16 3 C -0.09 -0.92 2.93 -89.50 -0.26 -1.18 16 4 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 5 C -0.12 -1.36 5.22 -25.07 -0.13 -1.49 16 6 C -0.16 -1.81 6.40 -24.74 -0.16 -1.97 16 7 C 0.09 1.03 3.10 -66.06 -0.20 0.82 16 8 H 0.07 0.84 7.83 -51.93 -0.41 0.43 16 9 N -0.67 -9.73 4.52 -104.98 -0.47 -10.20 16 10 C 0.07 0.98 5.97 -3.82 -0.02 0.96 16 11 C 0.06 1.16 6.28 37.16 0.23 1.40 16 12 O -0.40 -9.50 9.85 -35.23 -0.35 -9.85 16 13 C 0.20 5.44 5.69 36.01 0.20 5.65 16 14 C -0.51 -15.14 9.43 -34.44 -0.32 -15.46 16 15 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 17 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 18 Si 0.91 21.90 29.54 -169.99 -5.02 16.87 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 22 C -0.08 -0.91 3.47 -89.50 -0.31 -1.22 16 23 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 24 C -0.13 -1.49 7.37 37.16 0.27 -1.21 16 25 H 0.05 0.57 7.51 -51.93 -0.39 0.18 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.89 6.91 -51.93 -0.36 0.54 16 29 H 0.06 0.65 6.42 -51.93 -0.33 0.32 16 30 H 0.07 0.94 7.26 -51.93 -0.38 0.56 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.87 7.98 -51.93 -0.41 0.46 16 34 H 0.36 5.88 7.22 -39.29 -0.28 5.59 16 35 H 0.03 0.50 7.98 -51.93 -0.41 0.08 16 36 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 37 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 40 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 41 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 42 H 0.07 1.00 5.97 -51.93 -0.31 0.69 16 43 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.04 0.43 6.62 -51.93 -0.34 0.08 16 LS Contribution 339.16 15.07 5.11 5.11 Total: -1.00 -29.60 339.16 -8.79 -38.39 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -8.25 Total: 0.70 kcal Atomic # 6 Polarization: -14.20 SS G_CDS: -0.55 Total: -14.75 kcal Atomic # 7 Polarization: -36.74 SS G_CDS: 0.26 Total: -36.48 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: -0.35 Total: -9.85 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.60 -8.79 -38.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385839606.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.819 kcal (2) G-P(sol) polarization free energy of solvation -29.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds