Wall clock time and date at job start Mon Mar 30 2020 07:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47038 * 2 1 4 4 H 1.08998 * 110.05499 * 53.58535 * 3 2 1 5 5 C 1.54267 * 110.03137 * 292.16780 * 3 2 1 6 6 C 1.54891 * 104.19324 * 217.10706 * 5 3 2 7 7 C 1.54888 * 102.75120 * 37.94011 * 6 5 3 8 8 H 1.09000 * 110.48622 * 203.37816 * 7 6 5 9 9 N 1.46898 * 110.48313 * 80.73624 * 7 6 5 10 10 C 1.46905 * 111.00055 * 90.22655 * 9 7 6 11 11 C 1.53002 * 109.47174 * 179.97438 * 10 9 7 12 12 O 1.42905 * 109.47033 * 65.00355 * 11 10 9 13 13 C 1.42898 * 113.99911 * 179.97438 * 12 11 10 14 14 C 1.50702 * 109.46679 * 179.97438 * 13 12 11 15 15 H 1.07993 * 120.00464 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99553 * 179.97438 * 14 13 12 17 17 N 1.31516 * 120.00070 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99816 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47353 * 90.00194 * 18 16 14 20 20 H 1.48506 * 109.47199 * 209.99764 * 18 16 14 21 21 H 1.48500 * 109.47433 * 329.99756 * 18 16 14 22 22 C 1.53876 * 110.03160 * 175.00197 * 3 2 1 23 23 H 1.08997 * 110.02757 * 238.61684 * 22 3 2 24 24 C 1.53003 * 110.03313 * 359.97438 * 22 3 2 25 25 H 1.09002 * 109.47375 * 60.00280 * 1 2 3 26 26 H 1.09004 * 109.46847 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47143 * 300.00136 * 1 2 3 28 28 H 1.08998 * 109.47143 * 239.99864 * 2 1 3 29 29 H 1.08998 * 109.46916 * 120.00308 * 2 1 3 30 30 H 1.09004 * 110.48597 * 335.78345 * 5 3 2 31 31 H 1.08994 * 110.48679 * 98.42871 * 5 3 2 32 32 H 1.09005 * 110.75269 * 279.62515 * 6 5 3 33 33 H 1.08999 * 110.75712 * 156.25949 * 6 5 3 34 34 H 1.00897 * 111.00549 * 326.27589 * 9 7 6 35 35 H 1.08998 * 109.46863 * 299.99952 * 10 9 7 36 36 H 1.09004 * 109.47008 * 59.99822 * 10 9 7 37 37 H 1.08998 * 109.46866 * 184.99540 * 11 10 9 38 38 H 1.08997 * 109.47499 * 305.00047 * 11 10 9 39 39 H 1.08995 * 109.46991 * 299.99675 * 13 12 11 40 40 H 1.08997 * 109.46887 * 60.00046 * 13 12 11 41 41 H 0.97004 * 119.99732 * 180.02562 * 17 16 14 42 42 H 1.09003 * 109.46816 * 59.99934 * 24 22 3 43 43 H 1.08999 * 109.46961 * 180.02562 * 24 22 3 44 44 H 1.09004 * 109.46525 * 300.00282 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5915 1.9975 0.8240 5 6 1.7005 2.1230 -1.3422 6 6 2.9289 3.0200 -1.6346 7 6 4.1124 2.1496 -1.1440 8 1 4.9718 2.7752 -0.9028 9 7 4.4711 1.1504 -2.1593 10 6 5.4876 1.6768 -3.0800 11 6 5.8351 0.6099 -4.1202 12 8 4.6896 0.3459 -4.9327 13 6 4.9083 -0.6413 -5.9425 14 6 3.6414 -0.8390 -6.7343 15 1 2.7576 -0.2682 -6.4906 16 6 3.6107 -1.7487 -7.7700 17 7 4.6869 -2.4441 -8.0665 18 14 2.0407 -1.9932 -8.7521 19 1 2.0263 -1.0563 -9.9041 20 1 1.9810 -3.3910 -9.2501 21 1 0.8665 -1.7270 -7.8828 22 6 3.5735 1.4594 0.1259 23 1 3.8691 2.0219 1.0115 24 6 4.1081 0.0284 0.2124 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.5772 1.3772 -2.1276 31 1 0.7998 2.7291 -1.2456 32 1 2.8720 3.9495 -1.0679 33 1 3.0144 3.2220 -2.7023 34 1 3.6547 0.8373 -2.6629 35 1 5.0986 2.5621 -3.5830 36 1 6.3836 1.9420 -2.5188 37 1 6.6514 0.9669 -4.7481 38 1 6.1400 -0.3058 -3.6136 39 1 5.7052 -0.3099 -6.6080 40 1 5.1942 -1.5830 -5.4740 41 1 4.6654 -3.0838 -8.7954 42 1 3.8285 -0.5188 -0.6879 43 1 5.1942 0.0511 0.3017 44 1 3.6822 -0.4663 1.0854 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385839606.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:01 Heat of formation + Delta-G solvation = -93.281630 kcal Electronic energy + Delta-G solvation = -19826.993173 eV Core-core repulsion = 16970.303734 eV Total energy + Delta-G solvation = -2856.689440 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.57485 -38.67838 -36.05686 -34.87120 -33.14556 -32.11701 -30.16524 -28.69589 -26.92124 -25.68758 -24.52891 -23.58659 -22.87525 -20.99253 -19.33034 -18.63714 -17.51635 -17.37689 -16.67851 -16.35436 -15.95574 -15.53133 -15.43537 -15.15316 -14.84435 -14.39275 -14.10107 -13.78802 -13.39450 -13.34092 -13.19190 -12.89281 -12.73551 -12.65740 -12.45292 -12.21064 -12.15386 -11.91055 -11.86644 -11.73493 -11.56666 -11.29008 -11.22166 -11.04038 -10.92529 -10.86528 -10.23158 -9.19747 -8.32835 -6.45233 1.38827 1.41604 1.53577 2.33677 3.01071 3.21219 3.28229 3.66676 3.73898 3.93887 4.22810 4.31679 4.39803 4.40304 4.48866 4.53316 4.56817 4.60351 4.70382 4.78010 4.82412 4.84211 4.84418 4.87224 4.96584 4.99164 5.05776 5.12289 5.18129 5.20973 5.27022 5.30268 5.35541 5.49692 5.53849 5.55290 5.61409 5.81678 5.95186 6.26781 6.48376 6.53248 6.81332 7.26753 8.79570 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.019471 B = 0.004933 C = 0.004341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.660727 B = 5674.490360 C = 6448.082974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.081 4.081 4 H 0.081 0.919 5 C -0.118 4.118 6 C -0.152 4.152 7 C 0.083 3.917 8 H 0.086 0.914 9 N -0.677 5.677 10 C 0.075 3.925 11 C 0.055 3.945 12 O -0.408 6.408 13 C 0.212 3.788 14 C -0.547 4.547 15 H 0.061 0.939 16 C 0.007 3.993 17 N -0.931 5.931 18 Si 0.982 3.018 19 H -0.267 1.267 20 H -0.274 1.274 21 H -0.265 1.265 22 C -0.079 4.079 23 H 0.084 0.916 24 C -0.122 4.122 25 H 0.046 0.954 26 H 0.050 0.950 27 H 0.062 0.938 28 H 0.046 0.954 29 H 0.070 0.930 30 H 0.046 0.954 31 H 0.070 0.930 32 H 0.085 0.915 33 H 0.048 0.952 34 H 0.341 0.659 35 H 0.029 0.971 36 H 0.102 0.898 37 H 0.045 0.955 38 H 0.042 0.958 39 H -0.016 1.016 40 H -0.016 1.016 41 H 0.271 0.729 42 H 0.049 0.951 43 H 0.042 0.958 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.926 9.414 18.021 20.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.099 4.099 4 H 0.099 0.901 5 C -0.155 4.155 6 C -0.191 4.191 7 C -0.027 4.027 8 H 0.104 0.896 9 N -0.308 5.308 10 C -0.054 4.054 11 C -0.022 4.022 12 O -0.328 6.328 13 C 0.137 3.863 14 C -0.584 4.584 15 H 0.079 0.921 16 C -0.192 4.192 17 N -0.570 5.570 18 Si 0.805 3.195 19 H -0.193 1.193 20 H -0.199 1.199 21 H -0.189 1.189 22 C -0.098 4.098 23 H 0.102 0.898 24 C -0.179 4.179 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.065 0.935 29 H 0.089 0.911 30 H 0.064 0.936 31 H 0.088 0.912 32 H 0.104 0.896 33 H 0.066 0.934 34 H 0.159 0.841 35 H 0.048 0.952 36 H 0.121 0.879 37 H 0.063 0.937 38 H 0.060 0.940 39 H 0.002 0.998 40 H 0.001 0.999 41 H 0.079 0.921 42 H 0.068 0.932 43 H 0.061 0.939 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.554 9.047 18.332 20.749 hybrid contribution -0.577 0.058 -1.508 1.615 sum -4.131 9.105 16.824 19.571 Atomic orbital electron populations 1.21808 0.95970 1.01457 1.01720 1.21722 0.95570 0.96499 1.01697 1.21793 0.95102 0.95818 0.97225 0.90064 1.22409 0.97868 0.98165 0.97101 1.23126 0.96296 0.99344 1.00314 1.22484 0.96621 0.91246 0.92320 0.89626 1.60658 1.15621 1.37753 1.16757 1.21928 0.96988 0.94301 0.92156 1.22608 0.88842 0.98550 0.92242 1.87755 1.36392 1.60903 1.47719 1.19772 0.96186 0.85350 0.84979 1.21368 0.97840 1.23265 1.15955 0.92069 1.25950 1.00875 0.94491 0.97837 1.70075 1.30437 1.25773 1.30693 0.85205 0.78124 0.77854 0.78367 1.19262 1.19891 1.18888 1.21821 0.94273 0.97063 0.96681 0.89768 1.21613 0.99740 0.95910 1.00671 0.93475 0.93061 0.91881 0.93503 0.91103 0.93555 0.91161 0.89637 0.93358 0.84091 0.95233 0.87943 0.93652 0.94007 0.99841 0.99854 0.92052 0.93168 0.93912 0.92929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 9.77 71.98 0.70 -2.20 16 2 C -0.12 -2.45 4.11 30.59 0.13 -2.33 16 3 C -0.08 -1.57 2.93 -10.07 -0.03 -1.60 16 4 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 5 C -0.12 -2.60 5.22 31.67 0.17 -2.43 16 6 C -0.15 -3.30 6.40 31.89 0.20 -3.10 16 7 C 0.08 1.86 3.10 45.99 0.14 2.01 16 8 H 0.09 1.73 7.83 -2.39 -0.02 1.71 16 9 N -0.68 -19.49 4.52 -486.03 -2.20 -21.69 16 10 C 0.08 2.23 5.97 86.30 0.51 2.74 16 11 C 0.05 2.08 6.28 71.98 0.45 2.53 16 12 O -0.41 -20.07 9.85 -148.98 -1.47 -21.54 16 13 C 0.21 12.16 5.69 71.24 0.41 12.57 16 14 C -0.55 -32.96 9.43 25.60 0.24 -32.72 16 15 H 0.06 3.64 7.81 -2.91 -0.02 3.62 16 16 C 0.01 0.41 5.46 84.65 0.46 0.87 16 17 N -0.93 -56.60 13.29 21.45 0.28 -56.32 16 18 Si 0.98 44.78 29.54 68.60 2.03 46.81 16 19 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 20 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 21 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 22 C -0.08 -1.58 3.47 -10.07 -0.03 -1.61 16 23 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 24 C -0.12 -2.74 7.37 71.98 0.53 -2.21 16 25 H 0.05 0.96 7.51 -2.39 -0.02 0.94 16 26 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.05 1.21 6.91 -2.39 -0.02 1.19 16 29 H 0.07 1.36 6.42 -2.39 -0.02 1.34 16 30 H 0.05 1.25 7.26 -2.38 -0.02 1.23 16 31 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.09 1.53 8.14 -2.38 -0.02 1.51 16 33 H 0.05 1.24 7.98 -2.39 -0.02 1.22 16 34 H 0.34 11.62 7.22 -89.70 -0.65 10.97 16 35 H 0.03 0.89 7.98 -2.39 -0.02 0.87 16 36 H 0.10 2.45 8.08 -2.39 -0.02 2.43 16 37 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 39 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 40 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 41 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 42 H 0.05 1.37 5.97 -2.39 -0.01 1.36 16 43 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.05 1.03 6.62 -2.38 -0.02 1.02 16 Total: -1.00 -64.12 339.16 2.82 -61.30 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: 0.29 Total: 18.91 kcal Atomic # 6 Polarization: -31.36 SS G_CDS: 3.88 Total: -27.47 kcal Atomic # 7 Polarization: -76.10 SS G_CDS: -1.91 Total: -78.01 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -1.47 Total: -21.54 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -64.12 2.82 -61.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385839606.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.980 kcal (2) G-P(sol) polarization free energy of solvation -64.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds