Wall clock time and date at job start Mon Mar 30 2020 07:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47036 * 2 1 4 4 H 1.09000 * 110.67427 * 56.78198 * 3 2 1 5 5 C 1.54892 * 110.75542 * 293.55147 * 3 2 1 6 6 C 1.54268 * 104.19433 * 203.55490 * 5 3 2 7 7 C 1.53880 * 106.59798 * 23.61209 * 6 5 3 8 8 H 1.08998 * 110.02496 * 240.66470 * 7 6 5 9 9 N 1.46902 * 110.03344 * 119.28442 * 7 6 5 10 10 C 1.46894 * 110.99820 * 87.09058 * 9 7 6 11 11 C 1.53009 * 109.46764 * 180.02562 * 10 9 7 12 12 O 1.42899 * 109.47113 * 64.99856 * 11 10 9 13 13 C 1.42903 * 113.99629 * 180.02562 * 12 11 10 14 14 C 1.50701 * 109.46878 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99594 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 119.99875 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.47061 * 90.00257 * 18 16 14 20 20 H 1.48497 * 109.46906 * 209.99430 * 18 16 14 21 21 H 1.48498 * 109.47403 * 329.99876 * 18 16 14 22 22 C 1.54268 * 106.63816 * 359.97161 * 7 6 5 23 23 H 1.08996 * 110.48606 * 95.09965 * 22 7 6 24 24 C 1.53005 * 110.48232 * 217.73833 * 22 7 6 25 25 H 1.08991 * 109.47248 * 59.99637 * 1 2 3 26 26 H 1.09001 * 109.46475 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47078 * 299.99757 * 1 2 3 28 28 H 1.09003 * 109.47078 * 240.00243 * 2 1 3 29 29 H 1.08997 * 109.47425 * 119.99675 * 2 1 3 30 30 H 1.08997 * 110.48990 * 84.88070 * 5 3 2 31 31 H 1.09004 * 110.48492 * 322.22913 * 5 3 2 32 32 H 1.08996 * 110.03327 * 264.32408 * 6 5 3 33 33 H 1.08999 * 110.07170 * 142.91062 * 6 5 3 34 34 H 1.00897 * 110.99841 * 211.04473 * 9 7 6 35 35 H 1.09000 * 109.47283 * 59.99980 * 10 9 7 36 36 H 1.09002 * 109.47562 * 299.99300 * 10 9 7 37 37 H 1.09007 * 109.46516 * 304.99789 * 11 10 9 38 38 H 1.09004 * 109.47113 * 185.00258 * 11 10 9 39 39 H 1.09002 * 109.47382 * 59.99956 * 13 12 11 40 40 H 1.09001 * 109.46938 * 299.99942 * 13 12 11 41 41 H 0.97002 * 119.99739 * 180.02562 * 17 16 14 42 42 H 1.08995 * 109.47085 * 58.55234 * 24 22 7 43 43 H 1.09008 * 109.46766 * 178.54730 * 24 22 7 44 44 H 1.08999 * 109.47058 * 298.54539 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6415 1.9916 0.8532 5 6 1.6773 2.1530 -1.3277 6 6 2.7156 3.2878 -1.4455 7 6 3.9308 2.8609 -0.6034 8 1 4.1045 3.5832 0.1942 9 7 5.1225 2.7570 -1.4560 10 6 5.8027 4.0539 -1.5702 11 6 7.0356 3.9061 -2.4642 12 8 6.6241 3.5768 -3.7925 13 6 7.7055 3.4149 -4.7126 14 6 7.1591 3.0706 -6.0742 15 1 6.0928 2.9844 -6.2222 16 6 8.0206 2.8665 -7.1313 17 7 7.5437 2.5666 -8.3196 18 14 9.8649 3.0162 -6.8754 19 1 10.4201 1.6937 -6.4905 20 1 10.5039 3.4735 -8.1354 21 1 10.1368 4.0001 -5.7969 22 6 3.5891 1.4819 -0.0023 23 1 3.9899 0.6836 -0.6268 24 6 4.1308 1.3706 1.4244 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 0.6685 2.5627 -1.2781 31 1 1.7692 1.4633 -2.1669 32 1 2.2992 4.2168 -1.0560 33 1 3.0104 3.4186 -2.4866 34 1 5.7521 2.0474 -1.1125 35 1 6.1096 4.3916 -0.5803 36 1 5.1222 4.7839 -2.0084 37 1 7.6740 3.1132 -2.0744 38 1 7.5894 4.8449 -2.4776 39 1 8.3575 2.6116 -4.3694 40 1 8.2735 4.3433 -4.7727 41 1 8.1497 2.4227 -9.0632 42 1 3.7035 2.1635 2.0381 43 1 3.8582 0.4012 1.8419 44 1 5.2163 1.4675 1.4094 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385839612.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:05 Heat of formation + Delta-G solvation = -76.097249 kcal Electronic energy + Delta-G solvation = -19300.051490 eV Core-core repulsion = 16444.107221 eV Total energy + Delta-G solvation = -2855.944269 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.34789 -37.04669 -35.08827 -32.76472 -32.24153 -31.37728 -29.04897 -27.36247 -26.14068 -24.42249 -22.71349 -21.79870 -21.53509 -19.82396 -19.52198 -16.84656 -16.24193 -15.63425 -15.27151 -15.00265 -14.70500 -14.43112 -14.11153 -13.66544 -13.53948 -13.40464 -12.99392 -12.65133 -12.54154 -12.38838 -12.11719 -11.91637 -11.62192 -11.29865 -11.14268 -11.00225 -10.86013 -10.70619 -10.61620 -10.56540 -10.38948 -10.36511 -10.15094 -9.81751 -9.11059 -8.77660 -8.39443 -8.12908 -6.06171 -4.04270 3.27707 3.34373 3.36104 4.24466 4.39848 4.48914 4.50804 4.70582 4.76722 5.06823 5.09893 5.22005 5.25077 5.27271 5.35660 5.44168 5.46738 5.52345 5.57788 5.60597 5.66257 5.76085 5.81020 5.84857 5.85993 5.90672 5.96261 6.06305 6.10588 6.11489 6.16719 6.24541 6.28422 6.45562 6.49071 6.66287 7.06085 7.31214 7.62224 7.66329 8.11867 8.74994 9.07461 9.53711 11.07083 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.027378 B = 0.003832 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.491479 B = 7304.887411 C = 7778.699187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C -0.085 4.085 4 H 0.071 0.929 5 C -0.115 4.115 6 C -0.119 4.119 7 C 0.089 3.911 8 H 0.040 0.960 9 N -0.669 5.669 10 C 0.065 3.935 11 C 0.061 3.939 12 O -0.364 6.364 13 C 0.167 3.833 14 C -0.514 4.514 15 H 0.083 0.917 16 C 0.071 3.929 17 N -0.897 5.897 18 Si 0.876 3.124 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.267 1.267 22 C -0.097 4.097 23 H 0.086 0.914 24 C -0.144 4.144 25 H 0.056 0.944 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.054 0.946 33 H 0.083 0.917 34 H 0.337 0.663 35 H 0.032 0.968 36 H 0.078 0.922 37 H 0.035 0.965 38 H 0.040 0.960 39 H -0.004 1.004 40 H -0.001 1.001 41 H 0.265 0.735 42 H 0.052 0.948 43 H 0.055 0.945 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.287 -1.576 20.987 23.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.153 4.153 3 C -0.104 4.104 4 H 0.090 0.910 5 C -0.152 4.152 6 C -0.157 4.157 7 C -0.021 4.021 8 H 0.058 0.942 9 N -0.300 5.300 10 C -0.064 4.064 11 C -0.017 4.017 12 O -0.283 6.283 13 C 0.092 3.908 14 C -0.552 4.552 15 H 0.101 0.899 16 C -0.131 4.131 17 N -0.536 5.536 18 Si 0.703 3.297 19 H -0.200 1.200 20 H -0.209 1.209 21 H -0.192 1.192 22 C -0.115 4.115 23 H 0.104 0.896 24 C -0.202 4.202 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.102 0.898 34 H 0.156 0.844 35 H 0.050 0.950 36 H 0.097 0.903 37 H 0.053 0.947 38 H 0.058 0.942 39 H 0.014 0.986 40 H 0.017 0.983 41 H 0.075 0.925 42 H 0.071 0.929 43 H 0.074 0.926 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.766 -1.546 20.142 22.438 hybrid contribution 1.810 0.201 0.959 2.058 sum -7.956 -1.345 21.101 22.591 Atomic orbital electron populations 1.21773 0.96042 1.01305 1.01784 1.21518 0.95687 0.96215 1.01927 1.22161 0.94307 0.95770 0.98144 0.91019 1.22373 0.98138 0.97575 0.97150 1.22220 0.94314 0.97199 1.02003 1.22217 0.91575 0.95617 0.92707 0.94185 1.60510 1.08902 1.07204 1.53421 1.21998 0.95857 0.92178 0.96369 1.22321 0.94970 0.98093 0.86337 1.88023 1.33264 1.90607 1.16382 1.20585 0.86693 0.94045 0.89491 1.20908 0.96571 1.47285 0.90451 0.89903 1.24772 0.98626 0.94788 0.94870 1.69882 1.35119 1.48019 1.00543 0.86852 0.85949 0.78950 0.77977 1.19998 1.20859 1.19191 1.22223 0.95597 0.97611 0.96102 0.89575 1.21832 1.00586 1.01581 0.96183 0.92463 0.93063 0.93082 0.91704 0.92334 0.92185 0.91214 0.92735 0.89813 0.84431 0.94959 0.90327 0.94733 0.94182 0.98628 0.98285 0.92458 0.92883 0.92562 0.92982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.76 37.16 0.36 -0.85 16 2 C -0.12 -1.02 5.45 -26.73 -0.15 -1.17 16 3 C -0.09 -0.81 2.35 -88.59 -0.21 -1.02 16 4 H 0.07 0.65 8.06 -51.93 -0.42 0.24 16 5 C -0.11 -1.25 5.47 -25.07 -0.14 -1.39 16 6 C -0.12 -1.49 6.52 -25.61 -0.17 -1.66 16 7 C 0.09 1.07 2.81 -66.59 -0.19 0.88 16 8 H 0.04 0.46 7.51 -51.93 -0.39 0.07 16 9 N -0.67 -9.77 6.11 -105.54 -0.64 -10.41 16 10 C 0.07 0.96 5.89 -3.82 -0.02 0.94 16 11 C 0.06 1.09 6.22 37.16 0.23 1.32 16 12 O -0.36 -8.74 10.27 -35.23 -0.36 -9.10 16 13 C 0.17 4.37 4.76 36.01 0.17 4.55 16 14 C -0.51 -15.69 9.99 -34.44 -0.34 -16.04 16 15 H 0.08 2.78 8.06 -52.49 -0.42 2.35 16 16 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 17 N -0.90 -28.17 13.96 55.43 0.77 -27.40 16 18 Si 0.88 21.80 27.47 -169.99 -4.67 17.13 16 19 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 22 C -0.10 -1.00 2.34 -88.92 -0.21 -1.21 16 23 H 0.09 1.01 7.88 -51.93 -0.41 0.60 16 24 C -0.14 -1.26 9.11 37.16 0.34 -0.92 16 25 H 0.06 0.47 7.40 -51.93 -0.38 0.09 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 29 H 0.06 0.48 8.02 -51.93 -0.42 0.06 16 30 H 0.06 0.59 8.01 -51.93 -0.42 0.18 16 31 H 0.07 0.84 8.02 -51.93 -0.42 0.43 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 1.29 7.92 -51.93 -0.41 0.88 16 34 H 0.34 4.62 8.34 -39.29 -0.33 4.30 16 35 H 0.03 0.40 8.07 -51.93 -0.42 -0.02 16 36 H 0.08 1.23 8.12 -51.93 -0.42 0.81 16 37 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.00 -0.10 7.57 -51.93 -0.39 -0.49 16 40 H 0.00 -0.01 7.20 -51.93 -0.37 -0.39 16 41 H 0.27 7.71 8.31 -40.82 -0.34 7.37 16 42 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.06 0.45 8.02 -51.92 -0.42 0.03 16 44 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 346.28 15.07 5.22 5.22 Total: -1.00 -31.91 346.28 -8.68 -40.59 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -8.58 Total: -1.48 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: -0.41 Total: -14.54 kcal Atomic # 7 Polarization: -37.94 SS G_CDS: 0.13 Total: -37.81 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: -0.36 Total: -9.10 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.67 Total: 17.13 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.91 -8.68 -40.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385839612.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.512 kcal (2) G-P(sol) polarization free energy of solvation -31.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds