Wall clock time and date at job start Mon Mar 30 2020 07:41:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47036 * 2 1 4 4 H 1.09000 * 110.67427 * 56.78198 * 3 2 1 5 5 C 1.54892 * 110.75542 * 293.55147 * 3 2 1 6 6 C 1.54268 * 104.19433 * 203.55490 * 5 3 2 7 7 C 1.53880 * 106.59798 * 23.61209 * 6 5 3 8 8 H 1.08998 * 110.02496 * 240.66470 * 7 6 5 9 9 N 1.46902 * 110.03344 * 119.28442 * 7 6 5 10 10 C 1.46894 * 110.99820 * 87.09058 * 9 7 6 11 11 C 1.53009 * 109.46764 * 180.02562 * 10 9 7 12 12 O 1.42899 * 109.47113 * 64.99856 * 11 10 9 13 13 C 1.42903 * 113.99629 * 180.02562 * 12 11 10 14 14 C 1.50701 * 109.46878 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99594 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 119.99875 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.47061 * 90.00257 * 18 16 14 20 20 H 1.48497 * 109.46906 * 209.99430 * 18 16 14 21 21 H 1.48498 * 109.47403 * 329.99876 * 18 16 14 22 22 C 1.54268 * 106.63816 * 359.97161 * 7 6 5 23 23 H 1.08996 * 110.48606 * 95.09965 * 22 7 6 24 24 C 1.53005 * 110.48232 * 217.73833 * 22 7 6 25 25 H 1.08991 * 109.47248 * 59.99637 * 1 2 3 26 26 H 1.09001 * 109.46475 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47078 * 299.99757 * 1 2 3 28 28 H 1.09003 * 109.47078 * 240.00243 * 2 1 3 29 29 H 1.08997 * 109.47425 * 119.99675 * 2 1 3 30 30 H 1.08997 * 110.48990 * 84.88070 * 5 3 2 31 31 H 1.09004 * 110.48492 * 322.22913 * 5 3 2 32 32 H 1.08996 * 110.03327 * 264.32408 * 6 5 3 33 33 H 1.08999 * 110.07170 * 142.91062 * 6 5 3 34 34 H 1.00897 * 110.99841 * 211.04473 * 9 7 6 35 35 H 1.09000 * 109.47283 * 59.99980 * 10 9 7 36 36 H 1.09002 * 109.47562 * 299.99300 * 10 9 7 37 37 H 1.09007 * 109.46516 * 304.99789 * 11 10 9 38 38 H 1.09004 * 109.47113 * 185.00258 * 11 10 9 39 39 H 1.09002 * 109.47382 * 59.99956 * 13 12 11 40 40 H 1.09001 * 109.46938 * 299.99942 * 13 12 11 41 41 H 0.97002 * 119.99739 * 180.02562 * 17 16 14 42 42 H 1.08995 * 109.47085 * 58.55234 * 24 22 7 43 43 H 1.09008 * 109.46766 * 178.54730 * 24 22 7 44 44 H 1.08999 * 109.47058 * 298.54539 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6415 1.9916 0.8532 5 6 1.6773 2.1530 -1.3277 6 6 2.7156 3.2878 -1.4455 7 6 3.9308 2.8609 -0.6034 8 1 4.1045 3.5832 0.1942 9 7 5.1225 2.7570 -1.4560 10 6 5.8027 4.0539 -1.5702 11 6 7.0356 3.9061 -2.4642 12 8 6.6241 3.5768 -3.7925 13 6 7.7055 3.4149 -4.7126 14 6 7.1591 3.0706 -6.0742 15 1 6.0928 2.9844 -6.2222 16 6 8.0206 2.8665 -7.1313 17 7 7.5437 2.5666 -8.3196 18 14 9.8649 3.0162 -6.8754 19 1 10.4201 1.6937 -6.4905 20 1 10.5039 3.4735 -8.1354 21 1 10.1368 4.0001 -5.7969 22 6 3.5891 1.4819 -0.0023 23 1 3.9899 0.6836 -0.6268 24 6 4.1308 1.3706 1.4244 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 0.6685 2.5627 -1.2781 31 1 1.7692 1.4633 -2.1669 32 1 2.2992 4.2168 -1.0560 33 1 3.0104 3.4186 -2.4866 34 1 5.7521 2.0474 -1.1125 35 1 6.1096 4.3916 -0.5803 36 1 5.1222 4.7839 -2.0084 37 1 7.6740 3.1132 -2.0744 38 1 7.5894 4.8449 -2.4776 39 1 8.3575 2.6116 -4.3694 40 1 8.2735 4.3433 -4.7727 41 1 8.1497 2.4227 -9.0632 42 1 3.7035 2.1635 2.0381 43 1 3.8582 0.4012 1.8419 44 1 5.2163 1.4675 1.4094 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385839612.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:04 Heat of formation + Delta-G solvation = -97.048462 kcal Electronic energy + Delta-G solvation = -19300.960003 eV Core-core repulsion = 16444.107221 eV Total energy + Delta-G solvation = -2856.852782 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.26820 -38.69872 -36.24757 -34.83172 -33.34701 -32.21829 -30.67773 -29.04254 -27.05520 -25.36937 -23.95837 -23.58274 -22.72397 -20.68480 -20.46073 -19.04856 -17.58509 -17.18457 -16.62980 -16.32935 -15.96783 -15.51903 -15.42812 -14.74634 -14.57679 -14.55753 -14.43992 -14.14085 -13.78345 -13.36423 -13.15321 -13.02420 -12.90096 -12.69005 -12.58307 -12.26672 -11.97390 -11.94262 -11.82089 -11.74067 -11.45147 -11.36560 -11.31805 -11.19105 -11.05484 -10.91230 -10.29941 -9.20679 -8.36646 -6.44379 1.32586 1.36403 1.47317 2.29803 2.95667 3.11499 3.24239 3.61819 3.67178 3.92672 4.20054 4.27018 4.31219 4.38115 4.40256 4.52607 4.53892 4.54794 4.59283 4.63886 4.67028 4.68681 4.77702 4.82624 4.94478 5.00640 5.02863 5.05617 5.11402 5.16997 5.23725 5.29605 5.34126 5.36486 5.41527 5.45310 5.48323 5.65579 5.95873 6.26532 6.56466 6.60340 6.82505 7.20401 8.80920 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.027378 B = 0.003832 C = 0.003599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.491479 B = 7304.887411 C = 7778.699187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.114 4.114 3 C -0.077 4.077 4 H 0.086 0.914 5 C -0.113 4.113 6 C -0.121 4.121 7 C 0.090 3.910 8 H 0.054 0.946 9 N -0.693 5.693 10 C 0.073 3.927 11 C 0.051 3.949 12 O -0.395 6.395 13 C 0.179 3.821 14 C -0.544 4.544 15 H 0.026 0.974 16 C 0.011 3.989 17 N -0.944 5.944 18 Si 0.959 3.041 19 H -0.259 1.259 20 H -0.273 1.273 21 H -0.245 1.245 22 C -0.093 4.093 23 H 0.068 0.932 24 C -0.139 4.139 25 H 0.049 0.951 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.049 0.951 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.049 0.951 32 H 0.066 0.934 33 H 0.044 0.956 34 H 0.341 0.659 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.049 0.951 38 H 0.056 0.944 39 H 0.008 0.992 40 H 0.010 0.990 41 H 0.273 0.727 42 H 0.062 0.938 43 H 0.065 0.935 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.770 -1.323 23.733 25.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.152 4.152 3 C -0.096 4.096 4 H 0.104 0.896 5 C -0.151 4.151 6 C -0.160 4.160 7 C -0.019 4.019 8 H 0.072 0.928 9 N -0.326 5.326 10 C -0.056 4.056 11 C -0.026 4.026 12 O -0.314 6.314 13 C 0.103 3.897 14 C -0.582 4.582 15 H 0.044 0.956 16 C -0.187 4.187 17 N -0.583 5.583 18 Si 0.780 3.220 19 H -0.184 1.184 20 H -0.198 1.198 21 H -0.169 1.169 22 C -0.112 4.112 23 H 0.086 0.914 24 C -0.196 4.196 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.068 0.932 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.063 0.937 34 H 0.160 0.840 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.026 0.974 40 H 0.028 0.972 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.084 0.916 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.270 -1.290 22.913 24.394 hybrid contribution 1.203 0.122 0.076 1.212 sum -7.067 -1.168 22.989 24.079 Atomic orbital electron populations 1.21763 0.95269 1.01793 1.01953 1.21498 0.96358 0.95574 1.01755 1.22132 0.93728 0.96232 0.97463 0.89565 1.22346 0.98383 0.96853 0.97520 1.22224 0.95385 0.98507 0.99847 1.22266 0.90163 0.96990 0.92467 0.92829 1.60456 1.09825 1.07383 1.54931 1.21927 0.94427 0.92085 0.97205 1.22700 0.96958 0.99246 0.83675 1.87981 1.33401 1.91044 1.18993 1.20287 0.86991 0.94577 0.87824 1.21177 0.94333 1.48893 0.93810 0.95574 1.25885 1.05301 0.93512 0.93980 1.70045 1.37824 1.48613 1.01851 0.85560 0.77377 0.80123 0.78946 1.18371 1.19764 1.16873 1.22178 0.96164 0.95891 0.96942 0.91373 1.21789 1.00570 1.02507 0.94756 0.93141 0.92490 0.92032 0.93197 0.91186 0.90956 0.93247 0.91484 0.93691 0.83953 0.91340 0.91778 0.93266 0.92573 0.97388 0.97229 0.91815 0.91923 0.91610 0.92946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.76 71.98 0.70 -1.49 16 2 C -0.11 -1.88 5.45 30.60 0.17 -1.72 16 3 C -0.08 -1.37 2.35 -9.48 -0.02 -1.39 16 4 H 0.09 1.33 8.06 -2.39 -0.02 1.31 16 5 C -0.11 -2.49 5.47 31.67 0.17 -2.32 16 6 C -0.12 -3.08 6.52 31.32 0.20 -2.88 16 7 C 0.09 2.10 2.81 45.64 0.13 2.23 16 8 H 0.05 1.12 7.51 -2.39 -0.02 1.10 16 9 N -0.69 -20.03 6.11 -487.81 -2.98 -23.01 16 10 C 0.07 2.06 5.89 86.31 0.51 2.57 16 11 C 0.05 1.76 6.22 71.99 0.45 2.21 16 12 O -0.39 -19.18 10.27 -148.98 -1.53 -20.71 16 13 C 0.18 9.32 4.76 71.24 0.34 9.65 16 14 C -0.54 -34.42 9.99 25.60 0.26 -34.17 16 15 H 0.03 1.87 8.06 -2.91 -0.02 1.85 16 16 C 0.01 0.66 5.47 84.66 0.46 1.12 16 17 N -0.94 -60.86 13.96 21.45 0.30 -60.56 16 18 Si 0.96 44.31 27.47 68.60 1.88 46.19 16 19 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 20 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 21 H -0.25 -10.42 6.54 99.48 0.65 -9.76 16 22 C -0.09 -1.82 2.34 -9.69 -0.02 -1.84 16 23 H 0.07 1.59 7.88 -2.39 -0.02 1.57 16 24 C -0.14 -2.07 9.11 71.98 0.66 -1.42 16 25 H 0.05 0.79 7.40 -2.39 -0.02 0.78 16 26 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.05 0.97 8.10 -2.39 -0.02 0.95 16 29 H 0.07 1.01 8.02 -2.39 -0.02 0.99 16 30 H 0.07 1.39 8.01 -2.39 -0.02 1.37 16 31 H 0.05 1.27 8.02 -2.39 -0.02 1.25 16 32 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.04 1.48 7.92 -2.39 -0.02 1.46 16 34 H 0.34 9.12 8.34 -89.70 -0.75 8.37 16 35 H 0.07 1.47 8.07 -2.39 -0.02 1.45 16 36 H 0.06 1.99 8.12 -2.39 -0.02 1.97 16 37 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 38 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 39 H 0.01 0.41 7.57 -2.39 -0.02 0.40 16 40 H 0.01 0.50 7.20 -2.39 -0.02 0.48 16 41 H 0.27 16.08 8.31 -92.71 -0.77 15.31 16 42 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.06 0.87 8.02 -2.38 -0.02 0.85 16 44 H 0.05 0.78 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -71.84 346.28 1.80 -70.04 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: 0.12 Total: 17.49 kcal Atomic # 6 Polarization: -33.44 SS G_CDS: 4.00 Total: -29.44 kcal Atomic # 7 Polarization: -80.90 SS G_CDS: -2.68 Total: -83.58 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: -1.53 Total: -20.71 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 1.88 Total: 46.19 kcal Total: -71.84 1.80 -70.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385839612.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.007 kcal (2) G-P(sol) polarization free energy of solvation -71.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds