Wall clock time and date at job start Mon Mar 30 2020 07:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47547 * 2 1 4 4 H 1.08996 * 110.04995 * 53.58184 * 3 2 1 5 5 C 1.54268 * 110.03027 * 292.16783 * 3 2 1 6 6 C 1.54894 * 104.19173 * 217.10111 * 5 3 2 7 7 C 1.54894 * 102.74902 * 37.94691 * 6 5 3 8 8 H 1.08991 * 110.48942 * 80.73013 * 7 6 5 9 9 N 1.46896 * 110.48333 * 203.37810 * 7 6 5 10 10 C 1.46895 * 111.00185 * 269.76827 * 9 7 6 11 11 C 1.52995 * 109.47579 * 180.02562 * 10 9 7 12 12 O 1.42895 * 109.47014 * 65.00126 * 11 10 9 13 13 C 1.42904 * 114.00151 * 180.02562 * 12 11 10 14 14 C 1.50700 * 109.47272 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99990 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00288 * 179.97438 * 14 13 12 17 17 N 1.31511 * 119.99514 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00116 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47456 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.46980 * 120.00343 * 18 16 14 21 21 H 1.48506 * 109.47119 * 240.00059 * 18 16 14 22 22 C 1.53873 * 110.03248 * 174.99950 * 3 2 1 23 23 H 1.09002 * 110.03423 * 0.02562 * 22 3 2 24 24 C 1.53005 * 110.07153 * 238.59124 * 22 3 2 25 25 H 1.09011 * 109.46860 * 59.99943 * 1 2 3 26 26 H 1.08998 * 109.47340 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47214 * 300.00420 * 1 2 3 28 28 H 1.09008 * 109.47350 * 239.99878 * 2 1 3 29 29 H 1.09000 * 109.46914 * 120.00538 * 2 1 3 30 30 H 1.08996 * 110.48851 * 98.42433 * 5 3 2 31 31 H 1.08997 * 110.59630 * 335.83350 * 5 3 2 32 32 H 1.08995 * 110.75978 * 279.62396 * 6 5 3 33 33 H 1.08999 * 110.75215 * 156.25532 * 6 5 3 34 34 H 1.00903 * 110.99973 * 145.81381 * 9 7 6 35 35 H 1.08997 * 109.47459 * 300.00448 * 10 9 7 36 36 H 1.09005 * 109.46660 * 60.00256 * 10 9 7 37 37 H 1.08998 * 109.47453 * 185.00295 * 11 10 9 38 38 H 1.08998 * 109.47453 * 305.00344 * 11 10 9 39 39 H 1.09005 * 109.46853 * 299.99862 * 13 12 11 40 40 H 1.08994 * 109.47448 * 60.00148 * 13 12 11 41 41 H 0.97004 * 119.99763 * 180.02562 * 17 16 14 42 42 H 1.09001 * 109.46986 * 300.72061 * 24 22 3 43 43 H 1.08998 * 109.47024 * 60.71677 * 24 22 3 44 44 H 1.08999 * 109.46936 * 180.71628 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5916 1.9974 0.8239 5 6 1.7006 2.1230 -1.3422 6 6 2.9291 3.0200 -1.6345 7 6 4.1126 2.1494 -1.1440 8 1 4.3786 1.4080 -1.8973 9 7 5.2707 2.9925 -0.8189 10 6 6.1369 3.1722 -1.9916 11 6 7.3297 4.0531 -1.6145 12 8 8.1362 3.3751 -0.6493 13 6 9.2830 4.1157 -0.2268 14 6 10.0566 3.3100 0.7848 15 1 9.7073 2.3304 1.0763 16 6 11.2104 3.8232 1.3383 17 7 11.6355 5.0162 0.9838 18 14 12.1690 2.8247 2.5927 19 1 11.4853 1.5260 2.8186 20 1 13.5424 2.5788 2.0845 21 1 12.2416 3.5755 3.8720 22 6 3.5735 1.4593 0.1260 23 1 3.9544 0.4398 0.1867 24 6 3.9897 2.2492 1.3685 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8932 -0.5139 0.8899 30 1 0.8000 2.7291 -1.2456 31 1 1.5760 1.3787 -2.1287 32 1 2.8723 3.9494 -1.0680 33 1 3.0146 3.2219 -2.7022 34 1 5.7889 2.6109 -0.0417 35 1 6.4961 2.2005 -2.3304 36 1 5.5708 3.6495 -2.7916 37 1 7.9244 4.2597 -2.5043 38 1 6.9695 4.9912 -1.1924 39 1 9.9184 4.3239 -1.0876 40 1 8.9630 5.0549 0.2243 41 1 12.4474 5.3772 1.3729 42 1 3.6151 3.2700 1.2924 43 1 3.5732 1.7747 2.2570 44 1 5.0771 2.2656 1.4412 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385839618.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:07 Heat of formation + Delta-G solvation = -79.355477 kcal Electronic energy + Delta-G solvation = -19333.567162 eV Core-core repulsion = 16477.481606 eV Total energy + Delta-G solvation = -2856.085556 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.47020 -36.95620 -35.02589 -32.85311 -32.20755 -31.11132 -28.76384 -26.90294 -25.92163 -24.92077 -22.43444 -22.30420 -21.37630 -20.10849 -19.07734 -16.45638 -15.83917 -15.73481 -15.57239 -15.03848 -14.80084 -14.51506 -14.25440 -13.63143 -13.26444 -13.18420 -13.02048 -12.62402 -12.39594 -12.06759 -11.84427 -11.72962 -11.41032 -11.30526 -11.20400 -10.85225 -10.78665 -10.63436 -10.61348 -10.56866 -10.47127 -10.37506 -10.25752 -9.94845 -9.08153 -8.81515 -8.15802 -8.11483 -6.10321 -4.11960 3.29266 3.35689 3.41891 4.35379 4.38452 4.45744 4.53613 4.73164 4.96917 5.01086 5.13516 5.23819 5.26234 5.33991 5.40656 5.47776 5.51674 5.59903 5.63765 5.67849 5.70603 5.79667 5.82061 5.88182 5.90647 6.00200 6.07063 6.14592 6.15462 6.21905 6.25347 6.34381 6.39021 6.43337 6.54628 7.13226 7.37047 7.45689 7.75938 7.80062 8.16509 8.59431 9.01695 9.52938 11.01286 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.030466 B = 0.003709 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.832820 B = 7547.946077 C = 8220.056974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.085 4.085 4 H 0.073 0.927 5 C -0.119 4.119 6 C -0.112 4.112 7 C 0.084 3.916 8 H 0.045 0.955 9 N -0.680 5.680 10 C 0.065 3.935 11 C 0.062 3.938 12 O -0.400 6.400 13 C 0.197 3.803 14 C -0.513 4.513 15 H 0.066 0.934 16 C 0.055 3.945 17 N -0.898 5.898 18 Si 0.907 3.093 19 H -0.271 1.271 20 H -0.283 1.283 21 H -0.282 1.282 22 C -0.095 4.095 23 H 0.068 0.932 24 C -0.139 4.139 25 H 0.054 0.946 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.076 0.924 33 H 0.058 0.942 34 H 0.357 0.643 35 H 0.032 0.968 36 H 0.073 0.927 37 H 0.039 0.961 38 H 0.046 0.954 39 H 0.003 0.997 40 H 0.006 0.994 41 H 0.263 0.737 42 H 0.062 0.938 43 H 0.047 0.953 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.546 -6.671 -4.192 22.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.155 4.155 3 C -0.104 4.104 4 H 0.092 0.908 5 C -0.157 4.157 6 C -0.150 4.150 7 C -0.027 4.027 8 H 0.063 0.937 9 N -0.315 5.315 10 C -0.064 4.064 11 C -0.016 4.016 12 O -0.320 6.320 13 C 0.123 3.877 14 C -0.552 4.552 15 H 0.084 0.916 16 C -0.146 4.146 17 N -0.537 5.537 18 Si 0.734 3.266 19 H -0.195 1.195 20 H -0.209 1.209 21 H -0.208 1.208 22 C -0.114 4.114 23 H 0.086 0.914 24 C -0.197 4.197 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.076 0.924 34 H 0.180 0.820 35 H 0.050 0.950 36 H 0.091 0.909 37 H 0.057 0.943 38 H 0.064 0.936 39 H 0.021 0.979 40 H 0.024 0.976 41 H 0.073 0.927 42 H 0.081 0.919 43 H 0.066 0.934 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -20.749 -6.144 -4.170 22.038 hybrid contribution 1.157 -0.952 0.388 1.548 sum -19.592 -7.096 -3.782 21.178 Atomic orbital electron populations 1.21785 0.96093 1.01251 1.01786 1.21657 0.95645 0.96430 1.01816 1.21841 0.94803 0.95688 0.98044 0.90829 1.22408 0.97960 0.98536 0.96758 1.22518 0.93371 0.98788 1.00305 1.22377 0.91554 0.93046 0.95697 0.93715 1.60754 1.10229 1.52055 1.08452 1.21985 0.92678 0.98680 0.93106 1.22294 0.91243 0.95408 0.92622 1.87781 1.39848 1.45333 1.59002 1.20173 0.81596 0.91821 0.94141 1.21092 1.07615 1.03483 1.22981 0.91597 1.24954 0.97180 0.95243 0.97186 1.69976 1.23498 1.16519 1.43756 0.86293 0.79496 0.80094 0.80683 1.19511 1.20879 1.20814 1.21953 0.94851 0.99151 0.95467 0.91397 1.21758 1.01930 1.00311 0.95677 0.92691 0.93109 0.92866 0.92105 0.92134 0.91952 0.91913 0.90546 0.92357 0.82018 0.95002 0.90908 0.94309 0.93601 0.97869 0.97627 0.92721 0.91887 0.93373 0.91768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.77 37.15 0.36 -0.76 16 2 C -0.12 -1.00 5.06 -26.73 -0.14 -1.14 16 3 C -0.08 -0.81 2.58 -89.50 -0.23 -1.04 16 4 H 0.07 0.71 7.67 -51.93 -0.40 0.31 16 5 C -0.12 -1.09 5.53 -25.07 -0.14 -1.23 16 6 C -0.11 -1.22 6.57 -24.73 -0.16 -1.39 16 7 C 0.08 1.04 3.05 -66.05 -0.20 0.84 16 8 H 0.04 0.57 7.82 -51.93 -0.41 0.17 16 9 N -0.68 -10.26 5.69 -104.98 -0.60 -10.86 16 10 C 0.06 1.01 5.97 -3.83 -0.02 0.99 16 11 C 0.06 1.19 6.28 37.16 0.23 1.42 16 12 O -0.40 -9.65 9.85 -35.23 -0.35 -9.99 16 13 C 0.20 5.47 5.69 36.01 0.20 5.67 16 14 C -0.51 -15.20 9.43 -34.44 -0.32 -15.53 16 15 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 16 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 17 N -0.90 -27.11 13.29 55.43 0.74 -26.37 16 18 Si 0.91 21.93 29.54 -169.99 -5.02 16.91 16 19 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 C -0.10 -1.08 3.05 -89.50 -0.27 -1.35 16 23 H 0.07 0.78 7.67 -51.93 -0.40 0.38 16 24 C -0.14 -1.70 8.14 37.16 0.30 -1.39 16 25 H 0.05 0.39 7.51 -51.92 -0.39 0.00 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.52 8.01 -51.92 -0.42 0.11 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.55 7.77 -51.93 -0.40 0.15 16 32 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.36 6.00 5.80 -39.29 -0.23 5.77 16 35 H 0.03 0.51 8.08 -51.93 -0.42 0.09 16 36 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 16 40 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 41 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 44 H 0.06 0.89 6.25 -51.93 -0.32 0.57 16 LS Contribution 344.81 15.07 5.20 5.20 Total: -1.00 -30.07 344.81 -8.94 -39.01 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -8.43 Total: -0.51 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: -0.48 Total: -13.39 kcal Atomic # 7 Polarization: -37.37 SS G_CDS: 0.14 Total: -37.23 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: -0.35 Total: -9.99 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.07 -8.94 -39.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385839618.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.341 kcal (2) G-P(sol) polarization free energy of solvation -30.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds