Wall clock time and date at job start Mon Mar 30 2020 07:41:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47547 * 2 1 4 4 H 1.08996 * 110.04995 * 53.58184 * 3 2 1 5 5 C 1.54268 * 110.03027 * 292.16783 * 3 2 1 6 6 C 1.54894 * 104.19173 * 217.10111 * 5 3 2 7 7 C 1.54894 * 102.74902 * 37.94691 * 6 5 3 8 8 H 1.08991 * 110.48942 * 80.73013 * 7 6 5 9 9 N 1.46896 * 110.48333 * 203.37810 * 7 6 5 10 10 C 1.46895 * 111.00185 * 269.76827 * 9 7 6 11 11 C 1.52995 * 109.47579 * 180.02562 * 10 9 7 12 12 O 1.42895 * 109.47014 * 65.00126 * 11 10 9 13 13 C 1.42904 * 114.00151 * 180.02562 * 12 11 10 14 14 C 1.50700 * 109.47272 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99990 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00288 * 179.97438 * 14 13 12 17 17 N 1.31511 * 119.99514 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00116 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47456 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.46980 * 120.00343 * 18 16 14 21 21 H 1.48506 * 109.47119 * 240.00059 * 18 16 14 22 22 C 1.53873 * 110.03248 * 174.99950 * 3 2 1 23 23 H 1.09002 * 110.03423 * 0.02562 * 22 3 2 24 24 C 1.53005 * 110.07153 * 238.59124 * 22 3 2 25 25 H 1.09011 * 109.46860 * 59.99943 * 1 2 3 26 26 H 1.08998 * 109.47340 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47214 * 300.00420 * 1 2 3 28 28 H 1.09008 * 109.47350 * 239.99878 * 2 1 3 29 29 H 1.09000 * 109.46914 * 120.00538 * 2 1 3 30 30 H 1.08996 * 110.48851 * 98.42433 * 5 3 2 31 31 H 1.08997 * 110.59630 * 335.83350 * 5 3 2 32 32 H 1.08995 * 110.75978 * 279.62396 * 6 5 3 33 33 H 1.08999 * 110.75215 * 156.25532 * 6 5 3 34 34 H 1.00903 * 110.99973 * 145.81381 * 9 7 6 35 35 H 1.08997 * 109.47459 * 300.00448 * 10 9 7 36 36 H 1.09005 * 109.46660 * 60.00256 * 10 9 7 37 37 H 1.08998 * 109.47453 * 185.00295 * 11 10 9 38 38 H 1.08998 * 109.47453 * 305.00344 * 11 10 9 39 39 H 1.09005 * 109.46853 * 299.99862 * 13 12 11 40 40 H 1.08994 * 109.47448 * 60.00148 * 13 12 11 41 41 H 0.97004 * 119.99763 * 180.02562 * 17 16 14 42 42 H 1.09001 * 109.46986 * 300.72061 * 24 22 3 43 43 H 1.08998 * 109.47024 * 60.71677 * 24 22 3 44 44 H 1.08999 * 109.46936 * 180.71628 * 24 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5916 1.9974 0.8239 5 6 1.7006 2.1230 -1.3422 6 6 2.9291 3.0200 -1.6345 7 6 4.1126 2.1494 -1.1440 8 1 4.3786 1.4080 -1.8973 9 7 5.2707 2.9925 -0.8189 10 6 6.1369 3.1722 -1.9916 11 6 7.3297 4.0531 -1.6145 12 8 8.1362 3.3751 -0.6493 13 6 9.2830 4.1157 -0.2268 14 6 10.0566 3.3100 0.7848 15 1 9.7073 2.3304 1.0763 16 6 11.2104 3.8232 1.3383 17 7 11.6355 5.0162 0.9838 18 14 12.1690 2.8247 2.5927 19 1 11.4853 1.5260 2.8186 20 1 13.5424 2.5788 2.0845 21 1 12.2416 3.5755 3.8720 22 6 3.5735 1.4593 0.1260 23 1 3.9544 0.4398 0.1867 24 6 3.9897 2.2492 1.3685 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8932 -0.5139 0.8899 30 1 0.8000 2.7291 -1.2456 31 1 1.5760 1.3787 -2.1287 32 1 2.8723 3.9494 -1.0680 33 1 3.0146 3.2219 -2.7022 34 1 5.7889 2.6109 -0.0417 35 1 6.4961 2.2005 -2.3304 36 1 5.5708 3.6495 -2.7916 37 1 7.9244 4.2597 -2.5043 38 1 6.9695 4.9912 -1.1924 39 1 9.9184 4.3239 -1.0876 40 1 8.9630 5.0549 0.2243 41 1 12.4474 5.3772 1.3729 42 1 3.6151 3.2700 1.2924 43 1 3.5732 1.7747 2.2570 44 1 5.0771 2.2656 1.4412 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385839618.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:07 Heat of formation + Delta-G solvation = -96.990873 kcal Electronic energy + Delta-G solvation = -19334.331890 eV Core-core repulsion = 16477.481606 eV Total energy + Delta-G solvation = -2856.850285 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.39882 -38.71347 -36.22185 -34.89536 -33.30160 -32.02001 -30.27940 -28.75055 -26.87887 -25.94979 -24.53609 -23.18445 -22.74452 -20.92217 -20.04338 -18.65528 -17.52722 -17.01516 -16.68213 -16.47096 -16.14124 -15.93980 -15.42447 -15.04988 -14.47165 -14.42642 -13.97176 -13.78224 -13.55201 -13.40800 -13.12768 -12.96685 -12.72618 -12.64625 -12.59832 -12.50238 -12.16340 -12.05711 -11.74664 -11.61271 -11.40467 -11.33131 -11.27168 -11.20928 -11.12226 -10.88519 -10.24581 -9.30340 -8.33263 -6.45755 1.39381 1.40939 1.55532 2.33854 3.00633 3.19027 3.25652 3.60666 3.69922 3.91920 4.19528 4.29626 4.31514 4.37461 4.44518 4.53818 4.55726 4.60879 4.62345 4.68924 4.75548 4.77361 4.83647 4.90585 4.94096 5.01549 5.05238 5.12139 5.17107 5.18674 5.24403 5.26667 5.39841 5.41088 5.48298 5.49684 5.53821 5.65693 5.94595 6.22027 6.46450 6.52225 6.80531 7.26269 8.79432 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.030466 B = 0.003709 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.832820 B = 7547.946077 C = 8220.056974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C -0.080 4.080 4 H 0.073 0.927 5 C -0.112 4.112 6 C -0.108 4.108 7 C 0.080 3.920 8 H 0.045 0.955 9 N -0.687 5.687 10 C 0.075 3.925 11 C 0.055 3.945 12 O -0.409 6.409 13 C 0.211 3.789 14 C -0.547 4.547 15 H 0.062 0.938 16 C 0.005 3.995 17 N -0.931 5.931 18 Si 0.984 3.016 19 H -0.264 1.264 20 H -0.271 1.271 21 H -0.271 1.271 22 C -0.094 4.094 23 H 0.065 0.935 24 C -0.134 4.134 25 H 0.059 0.941 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.344 0.656 35 H 0.029 0.971 36 H 0.100 0.900 37 H 0.047 0.953 38 H 0.042 0.958 39 H -0.016 1.016 40 H -0.016 1.016 41 H 0.271 0.729 42 H 0.055 0.945 43 H 0.059 0.941 44 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.595 -7.799 -4.043 23.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C -0.099 4.099 4 H 0.092 0.908 5 C -0.149 4.149 6 C -0.147 4.147 7 C -0.030 4.030 8 H 0.063 0.937 9 N -0.321 5.321 10 C -0.054 4.054 11 C -0.022 4.022 12 O -0.329 6.329 13 C 0.136 3.864 14 C -0.584 4.584 15 H 0.080 0.920 16 C -0.193 4.193 17 N -0.570 5.570 18 Si 0.807 3.193 19 H -0.188 1.188 20 H -0.197 1.197 21 H -0.196 1.196 22 C -0.113 4.113 23 H 0.084 0.916 24 C -0.192 4.192 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.165 0.835 35 H 0.047 0.953 36 H 0.119 0.881 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.002 0.998 40 H 0.002 0.998 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.078 0.922 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -21.829 -7.268 -4.046 23.360 hybrid contribution 1.441 -0.552 0.289 1.570 sum -20.388 -7.820 -3.757 22.157 Atomic orbital electron populations 1.21766 0.95051 1.01815 1.02072 1.21631 0.96513 0.95476 1.01726 1.21795 0.93135 0.96590 0.98359 0.90824 1.22381 0.97491 0.98432 0.96638 1.22484 0.93424 0.98327 1.00421 1.22498 0.90970 0.93177 0.96333 0.93709 1.60820 1.10557 1.52928 1.07825 1.21934 0.91619 0.97999 0.93887 1.22595 0.91942 0.95984 0.91682 1.87749 1.39159 1.45566 1.60399 1.19793 0.82398 0.91097 0.93070 1.21408 1.08890 1.03791 1.24325 0.91981 1.25985 0.97896 0.96381 0.99082 1.70081 1.24118 1.18078 1.44762 0.85117 0.77898 0.78498 0.77771 1.18771 1.19669 1.19631 1.21955 0.96334 0.98591 0.94404 0.91605 1.21697 1.00389 1.00272 0.96846 0.92236 0.92459 0.92750 0.92102 0.92391 0.90738 0.91032 0.91673 0.91699 0.83458 0.95260 0.88143 0.93485 0.93921 0.99777 0.99789 0.92033 0.92559 0.92206 0.94016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.77 71.98 0.70 -1.17 16 2 C -0.12 -1.74 5.06 30.59 0.15 -1.59 16 3 C -0.08 -1.38 2.58 -10.07 -0.03 -1.41 16 4 H 0.07 1.29 7.67 -2.39 -0.02 1.28 16 5 C -0.11 -1.80 5.53 31.67 0.18 -1.62 16 6 C -0.11 -2.20 6.57 31.89 0.21 -1.99 16 7 C 0.08 1.91 3.05 45.99 0.14 2.05 16 8 H 0.04 1.09 7.82 -2.39 -0.02 1.07 16 9 N -0.69 -20.70 5.69 -486.06 -2.77 -23.47 16 10 C 0.07 2.29 5.97 86.30 0.51 2.81 16 11 C 0.06 2.13 6.28 71.98 0.45 2.58 16 12 O -0.41 -20.27 9.85 -148.98 -1.47 -21.73 16 13 C 0.21 12.15 5.69 71.24 0.41 12.55 16 14 C -0.55 -32.98 9.43 25.60 0.24 -32.74 16 15 H 0.06 3.70 7.81 -2.91 -0.02 3.68 16 16 C 0.00 0.29 5.46 84.66 0.46 0.75 16 17 N -0.93 -56.67 13.29 21.45 0.28 -56.38 16 18 Si 0.98 44.76 29.54 68.60 2.03 46.78 16 19 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 20 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 21 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 22 C -0.09 -2.05 3.05 -10.07 -0.03 -2.08 16 23 H 0.07 1.46 7.67 -2.39 -0.02 1.44 16 24 C -0.13 -3.28 8.14 71.98 0.59 -2.70 16 25 H 0.06 0.69 7.51 -2.38 -0.02 0.67 16 26 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.06 0.92 8.01 -2.38 -0.02 0.90 16 29 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.07 1.05 8.14 -2.39 -0.02 1.04 16 31 H 0.07 1.06 7.77 -2.39 -0.02 1.04 16 32 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.34 11.87 5.80 -89.69 -0.52 11.35 16 35 H 0.03 0.91 8.08 -2.39 -0.02 0.90 16 36 H 0.10 2.54 8.14 -2.38 -0.02 2.52 16 37 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 39 H -0.02 -0.93 8.14 -2.38 -0.02 -0.95 16 40 H -0.02 -0.95 8.14 -2.39 -0.02 -0.96 16 41 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 42 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.04 1.20 6.25 -2.39 -0.01 1.18 16 Total: -1.00 -64.48 344.81 2.48 -62.00 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: 0.41 Total: 17.35 kcal Atomic # 6 Polarization: -28.54 SS G_CDS: 3.99 Total: -24.55 kcal Atomic # 7 Polarization: -77.37 SS G_CDS: -2.48 Total: -79.85 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: -1.47 Total: -21.73 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Total: -64.48 2.48 -62.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385839618.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.990 kcal (2) G-P(sol) polarization free energy of solvation -64.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds