Wall clock time and date at job start Mon Mar 30 2020 07:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47069 * 2 1 4 4 H 1.09001 * 109.90922 * 53.56969 * 3 2 1 5 5 C 1.53996 * 110.08386 * 292.36185 * 3 2 1 6 6 H 1.09004 * 110.30231 * 0.79097 * 5 3 2 7 7 C 1.53000 * 110.31244 * 122.86246 * 5 3 2 8 8 O 1.42897 * 109.47090 * 185.00103 * 7 5 3 9 9 C 1.54594 * 105.14036 * 241.78171 * 5 3 2 10 10 C 1.54941 * 102.92314 * 21.95672 * 9 5 3 11 11 N 1.47903 * 109.91765 * 174.67499 * 3 2 1 12 12 C 1.46902 * 110.99686 * 333.70060 * 11 3 2 13 13 C 1.53006 * 109.46777 * 176.54774 * 12 11 3 14 14 C 1.52999 * 109.46869 * 179.97438 * 13 12 11 15 15 C 1.52996 * 109.46888 * 180.02562 * 14 13 12 16 16 C 1.50699 * 109.47089 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99905 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00293 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00108 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 119.99755 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47191 * 89.99857 * 20 18 16 22 22 H 1.48502 * 109.47019 * 210.00113 * 20 18 16 23 23 H 1.48505 * 109.47221 * 329.99538 * 20 18 16 24 24 H 1.09002 * 109.47078 * 65.35532 * 1 2 3 25 25 H 1.09001 * 109.47209 * 185.35134 * 1 2 3 26 26 H 1.08998 * 109.47330 * 305.35435 * 1 2 3 27 27 H 1.08996 * 109.47272 * 239.99906 * 2 1 3 28 28 H 1.09003 * 109.47062 * 119.99715 * 2 1 3 29 29 H 1.08993 * 109.47088 * 305.00113 * 7 5 3 30 30 H 1.08999 * 109.46677 * 65.00157 * 7 5 3 31 31 H 0.96702 * 113.99855 * 179.97438 * 8 7 5 32 32 H 1.09002 * 110.72456 * 140.30967 * 9 5 3 33 33 H 1.08998 * 110.72585 * 263.41409 * 9 5 3 34 34 H 1.08994 * 110.66626 * 204.15237 * 10 9 5 35 35 H 1.09001 * 110.66904 * 81.02090 * 10 9 5 36 36 H 1.08995 * 109.46929 * 56.55526 * 12 11 3 37 37 H 1.08994 * 109.47401 * 296.55193 * 12 11 3 38 38 H 1.09003 * 109.46670 * 60.00350 * 13 12 11 39 39 H 1.08994 * 109.47497 * 300.00360 * 13 12 11 40 40 H 1.09003 * 109.47167 * 60.00680 * 14 13 12 41 41 H 1.08994 * 109.47376 * 300.00460 * 14 13 12 42 42 H 1.09000 * 109.47830 * 300.00287 * 15 14 13 43 43 H 1.09004 * 109.47262 * 60.00215 * 15 14 13 44 44 H 0.97004 * 119.99612 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5899 1.9953 0.8246 5 6 1.6974 2.1245 -1.3376 6 1 1.1551 1.4357 -1.9853 7 6 0.8681 3.3867 -1.0931 8 8 0.4623 3.9402 -2.3464 9 6 3.0619 2.4920 -1.9645 10 6 4.0407 1.5207 -1.2580 11 7 3.5133 1.4560 0.1291 12 6 3.9923 0.2507 0.8189 13 6 5.5219 0.2590 0.8571 14 6 6.0209 -0.9959 1.5761 15 6 7.5503 -0.9873 1.6148 16 6 8.0418 -2.2237 2.3225 17 1 7.3341 -2.9438 2.7058 18 6 9.3950 -2.4362 2.4796 19 7 9.8240 -3.5154 3.0967 20 14 10.6192 -1.1910 1.8159 21 1 10.9092 -0.1765 2.8609 22 1 11.8761 -1.8856 1.4378 23 1 10.0454 -0.5210 0.6213 24 1 -0.3633 0.4285 -0.9341 25 1 -0.3634 -1.0232 0.0958 26 1 -0.3634 0.5946 0.8381 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 -0.0140 3.1336 -0.5050 30 1 1.4690 4.1168 -0.5509 31 1 -0.0690 4.7444 -2.2677 32 1 3.0524 2.3152 -3.0400 33 1 3.3193 3.5287 -1.7477 34 1 5.0539 1.9224 -1.2659 35 1 4.0120 0.5371 -1.7267 36 1 3.6471 -0.6347 0.2852 37 1 3.6035 0.2360 1.8370 38 1 5.8672 1.1446 1.3907 39 1 5.9107 0.2738 -0.1610 40 1 5.6756 -1.8817 1.0428 41 1 5.6320 -1.0102 2.5942 42 1 7.9396 -0.9728 0.5968 43 1 7.8953 -0.1016 2.1483 44 1 10.7760 -3.6646 3.2076 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000386361044.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:58 Heat of formation + Delta-G solvation = -72.756271 kcal Electronic energy + Delta-G solvation = -19424.135809 eV Core-core repulsion = 16568.336415 eV Total energy + Delta-G solvation = -2855.799393 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.10765 -37.03181 -35.13687 -33.32882 -32.93238 -31.56554 -28.87866 -28.37996 -25.45467 -24.32168 -22.72016 -22.19274 -20.50219 -19.89192 -19.41790 -17.49820 -16.63934 -16.06790 -15.90895 -15.10807 -14.82570 -14.67396 -14.18599 -14.07502 -13.52469 -13.15640 -12.91596 -12.77322 -12.42064 -12.20602 -11.89300 -11.73796 -11.61937 -11.42634 -11.33522 -11.10813 -10.99203 -10.80826 -10.73113 -10.53847 -10.39109 -10.19585 -9.84507 -9.63696 -9.44919 -9.11806 -8.49855 -8.33029 -6.00649 -3.98068 3.33948 3.40862 3.45574 3.82134 3.97312 4.42375 4.49087 4.53672 4.73926 4.88326 5.01302 5.08685 5.13435 5.20420 5.29257 5.33340 5.36781 5.38330 5.46537 5.49079 5.62824 5.69944 5.79216 5.87350 5.91677 5.93180 6.01021 6.02807 6.09430 6.15242 6.19889 6.41008 6.69244 6.80254 6.92121 6.96642 7.14893 7.31130 7.37845 7.50846 7.84841 8.58842 9.04727 9.62530 11.13022 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.036808 B = 0.003626 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.518331 B = 7719.208874 C = 8298.788304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.152 4.152 3 C 0.073 3.927 4 H 0.085 0.915 5 C -0.094 4.094 6 H 0.082 0.918 7 C 0.086 3.914 8 O -0.574 6.574 9 C -0.112 4.112 10 C 0.032 3.968 11 N -0.512 5.512 12 C 0.043 3.957 13 C -0.119 4.119 14 C -0.101 4.101 15 C -0.014 4.014 16 C -0.519 4.519 17 H 0.070 0.930 18 C 0.064 3.936 19 N -0.906 5.906 20 Si 0.881 3.119 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.265 1.265 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.062 0.938 28 H 0.076 0.924 29 H 0.044 0.956 30 H 0.050 0.950 31 H 0.377 0.623 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.045 0.955 36 H 0.042 0.958 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.055 0.945 40 H 0.050 0.950 41 H 0.052 0.948 42 H 0.014 0.986 43 H 0.011 0.989 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.110 13.906 -9.431 26.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.190 4.190 3 C -0.036 4.036 4 H 0.103 0.897 5 C -0.113 4.113 6 H 0.101 0.899 7 C 0.008 3.992 8 O -0.379 6.379 9 C -0.150 4.150 10 C -0.096 4.096 11 N -0.235 5.235 12 C -0.084 4.084 13 C -0.157 4.157 14 C -0.139 4.139 15 C -0.051 4.051 16 C -0.557 4.557 17 H 0.089 0.911 18 C -0.137 4.137 19 N -0.546 5.546 20 Si 0.708 3.292 21 H -0.203 1.203 22 H -0.215 1.215 23 H -0.190 1.190 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.081 0.919 28 H 0.095 0.905 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.224 0.776 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.032 0.968 43 H 0.029 0.971 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -19.421 13.737 -9.277 25.533 hybrid contribution 0.189 0.230 -0.419 0.514 sum -19.232 13.968 -9.696 25.670 Atomic orbital electron populations 1.21753 0.95515 1.01734 1.01693 1.22233 0.96470 0.97478 1.02849 1.22457 0.89365 0.95008 0.96779 0.89693 1.22058 0.96493 0.96033 0.96711 0.89919 1.22268 0.97010 0.94798 0.85124 1.86478 1.74604 1.46092 1.30759 1.22492 0.93279 0.99938 0.99313 1.23265 0.99440 0.98341 0.88524 1.65006 1.04707 1.38416 1.15389 1.22471 0.96770 0.90394 0.98795 1.21727 0.92934 1.00008 1.00987 1.21416 0.98297 0.95103 0.99081 1.19564 0.91802 0.97156 0.96578 1.21196 0.92613 1.05700 1.36217 0.91146 1.25052 0.98518 0.95300 0.94785 1.69926 1.14655 1.26810 1.43162 0.86758 0.80638 0.81716 0.80057 1.20305 1.21462 1.19013 0.92744 0.92655 0.92694 0.91881 0.90531 0.93777 0.93157 0.77602 0.91162 0.90824 0.89752 0.93659 0.94034 0.90792 0.91784 0.92634 0.93111 0.92875 0.96819 0.97103 0.92817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.67 37.16 0.36 -0.87 16 2 C -0.15 -1.51 3.97 -26.73 -0.11 -1.62 16 3 C 0.07 0.76 2.85 -66.64 -0.19 0.57 16 4 H 0.09 0.86 7.68 -51.93 -0.40 0.46 16 5 C -0.09 -0.91 2.48 -89.26 -0.22 -1.13 16 6 H 0.08 0.84 6.85 -51.93 -0.36 0.48 16 7 C 0.09 0.71 6.13 37.16 0.23 0.94 16 8 O -0.57 -4.90 13.55 -35.23 -0.48 -5.37 16 9 C -0.11 -1.17 6.51 -24.87 -0.16 -1.34 16 10 C 0.03 0.38 5.37 -1.90 -0.01 0.37 16 11 N -0.51 -6.46 5.34 -222.57 -1.19 -7.64 16 12 C 0.04 0.60 3.69 -3.82 -0.01 0.59 16 13 C -0.12 -1.95 5.05 -26.73 -0.13 -2.09 16 14 C -0.10 -2.02 5.15 -26.73 -0.14 -2.16 16 15 C -0.01 -0.33 4.04 -27.89 -0.11 -0.45 16 16 C -0.52 -15.21 9.66 -34.44 -0.33 -15.54 16 17 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 18 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 19 N -0.91 -28.53 13.96 55.43 0.77 -27.76 16 20 Si 0.88 22.26 27.47 -169.99 -4.67 17.59 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 23 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 24 H 0.05 0.43 7.11 -51.93 -0.37 0.06 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.67 7.93 -51.93 -0.41 0.26 16 28 H 0.08 0.82 6.19 -51.93 -0.32 0.50 16 29 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.05 0.41 7.99 -51.93 -0.42 0.00 16 31 H 0.38 1.51 9.12 45.56 0.42 1.92 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.78 7.76 -51.93 -0.40 0.38 16 34 H 0.08 1.04 7.66 -51.93 -0.40 0.64 16 35 H 0.05 0.55 8.01 -51.93 -0.42 0.14 16 36 H 0.04 0.57 6.18 -51.93 -0.32 0.25 16 37 H 0.07 1.02 7.88 -51.93 -0.41 0.61 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.05 0.91 6.92 -51.93 -0.36 0.55 16 40 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.01 0.33 7.20 -51.93 -0.37 -0.04 16 43 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 44 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 336.46 15.07 5.07 5.07 Total: -1.00 -32.17 336.46 -8.90 -41.07 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -7.48 Total: -2.04 kcal Atomic # 6 Polarization: -19.98 SS G_CDS: -0.93 Total: -20.92 kcal Atomic # 7 Polarization: -34.99 SS G_CDS: -0.41 Total: -35.40 kcal Atomic # 8 Polarization: -4.90 SS G_CDS: -0.48 Total: -5.37 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.67 Total: 17.59 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.17 -8.90 -41.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386361044.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.685 kcal (2) G-P(sol) polarization free energy of solvation -32.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds