Wall clock time and date at job start Mon Mar 30 2020 07:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47069 * 2 1 4 4 H 1.09001 * 109.90922 * 53.56969 * 3 2 1 5 5 C 1.53996 * 110.08386 * 292.36185 * 3 2 1 6 6 H 1.09004 * 110.30231 * 0.79097 * 5 3 2 7 7 C 1.53000 * 110.31244 * 122.86246 * 5 3 2 8 8 O 1.42897 * 109.47090 * 185.00103 * 7 5 3 9 9 C 1.54594 * 105.14036 * 241.78171 * 5 3 2 10 10 C 1.54941 * 102.92314 * 21.95672 * 9 5 3 11 11 N 1.47903 * 109.91765 * 174.67499 * 3 2 1 12 12 C 1.46902 * 110.99686 * 333.70060 * 11 3 2 13 13 C 1.53006 * 109.46777 * 176.54774 * 12 11 3 14 14 C 1.52999 * 109.46869 * 179.97438 * 13 12 11 15 15 C 1.52996 * 109.46888 * 180.02562 * 14 13 12 16 16 C 1.50699 * 109.47089 * 180.02562 * 15 14 13 17 17 H 1.08001 * 119.99905 * 0.02562 * 16 15 14 18 18 C 1.37877 * 120.00293 * 179.97438 * 16 15 14 19 19 N 1.31515 * 120.00108 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 119.99755 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47191 * 89.99857 * 20 18 16 22 22 H 1.48502 * 109.47019 * 210.00113 * 20 18 16 23 23 H 1.48505 * 109.47221 * 329.99538 * 20 18 16 24 24 H 1.09002 * 109.47078 * 65.35532 * 1 2 3 25 25 H 1.09001 * 109.47209 * 185.35134 * 1 2 3 26 26 H 1.08998 * 109.47330 * 305.35435 * 1 2 3 27 27 H 1.08996 * 109.47272 * 239.99906 * 2 1 3 28 28 H 1.09003 * 109.47062 * 119.99715 * 2 1 3 29 29 H 1.08993 * 109.47088 * 305.00113 * 7 5 3 30 30 H 1.08999 * 109.46677 * 65.00157 * 7 5 3 31 31 H 0.96702 * 113.99855 * 179.97438 * 8 7 5 32 32 H 1.09002 * 110.72456 * 140.30967 * 9 5 3 33 33 H 1.08998 * 110.72585 * 263.41409 * 9 5 3 34 34 H 1.08994 * 110.66626 * 204.15237 * 10 9 5 35 35 H 1.09001 * 110.66904 * 81.02090 * 10 9 5 36 36 H 1.08995 * 109.46929 * 56.55526 * 12 11 3 37 37 H 1.08994 * 109.47401 * 296.55193 * 12 11 3 38 38 H 1.09003 * 109.46670 * 60.00350 * 13 12 11 39 39 H 1.08994 * 109.47497 * 300.00360 * 13 12 11 40 40 H 1.09003 * 109.47167 * 60.00680 * 14 13 12 41 41 H 1.08994 * 109.47376 * 300.00460 * 14 13 12 42 42 H 1.09000 * 109.47830 * 300.00287 * 15 14 13 43 43 H 1.09004 * 109.47262 * 60.00215 * 15 14 13 44 44 H 0.97004 * 119.99612 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5899 1.9953 0.8246 5 6 1.6974 2.1245 -1.3376 6 1 1.1551 1.4357 -1.9853 7 6 0.8681 3.3867 -1.0931 8 8 0.4623 3.9402 -2.3464 9 6 3.0619 2.4920 -1.9645 10 6 4.0407 1.5207 -1.2580 11 7 3.5133 1.4560 0.1291 12 6 3.9923 0.2507 0.8189 13 6 5.5219 0.2590 0.8571 14 6 6.0209 -0.9959 1.5761 15 6 7.5503 -0.9873 1.6148 16 6 8.0418 -2.2237 2.3225 17 1 7.3341 -2.9438 2.7058 18 6 9.3950 -2.4362 2.4796 19 7 9.8240 -3.5154 3.0967 20 14 10.6192 -1.1910 1.8159 21 1 10.9092 -0.1765 2.8609 22 1 11.8761 -1.8856 1.4378 23 1 10.0454 -0.5210 0.6213 24 1 -0.3633 0.4285 -0.9341 25 1 -0.3634 -1.0232 0.0958 26 1 -0.3634 0.5946 0.8381 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 -0.0140 3.1336 -0.5050 30 1 1.4690 4.1168 -0.5509 31 1 -0.0690 4.7444 -2.2677 32 1 3.0524 2.3152 -3.0400 33 1 3.3193 3.5287 -1.7477 34 1 5.0539 1.9224 -1.2659 35 1 4.0120 0.5371 -1.7267 36 1 3.6471 -0.6347 0.2852 37 1 3.6035 0.2360 1.8370 38 1 5.8672 1.1446 1.3907 39 1 5.9107 0.2738 -0.1610 40 1 5.6756 -1.8817 1.0428 41 1 5.6320 -1.0102 2.5942 42 1 7.9396 -0.9728 0.5968 43 1 7.8953 -0.1016 2.1483 44 1 10.7760 -3.6646 3.2076 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000386361044.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:58 Heat of formation + Delta-G solvation = -95.663272 kcal Electronic energy + Delta-G solvation = -19425.129131 eV Core-core repulsion = 16568.336415 eV Total energy + Delta-G solvation = -2856.792715 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.98369 -37.75726 -36.60937 -34.79990 -34.03734 -33.11120 -30.22301 -29.41456 -26.71695 -25.45663 -23.59059 -23.48925 -21.95503 -21.13589 -20.35599 -18.84918 -18.12048 -17.01903 -16.72283 -16.37808 -16.32922 -15.64212 -15.47395 -14.91414 -14.78530 -14.66553 -14.07376 -13.95820 -13.78811 -13.28300 -13.11837 -12.98197 -12.86470 -12.58084 -12.45425 -12.18431 -12.15208 -11.96023 -11.79831 -11.74408 -11.48758 -11.42371 -11.35343 -11.24975 -11.17568 -10.80798 -10.76904 -9.30228 -8.30337 -6.34383 1.35338 1.37102 1.49681 2.35976 3.00108 3.05014 3.20661 3.63846 3.73086 4.00023 4.08365 4.12750 4.15793 4.31323 4.37531 4.41892 4.50297 4.51833 4.54900 4.59641 4.66827 4.73414 4.79561 4.84862 4.91151 4.93479 5.04463 5.09630 5.13932 5.17014 5.19534 5.24582 5.25418 5.32296 5.39395 5.56644 5.63773 5.67815 5.99604 6.10037 6.28787 6.73816 6.93355 7.30492 8.86711 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.036808 B = 0.003626 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.518331 B = 7719.208874 C = 8298.788304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.149 4.149 3 C 0.074 3.926 4 H 0.092 0.908 5 C -0.091 4.091 6 H 0.079 0.921 7 C 0.089 3.911 8 O -0.592 6.592 9 C -0.108 4.108 10 C 0.030 3.970 11 N -0.520 5.520 12 C 0.052 3.948 13 C -0.107 4.107 14 C -0.094 4.094 15 C -0.012 4.012 16 C -0.535 4.535 17 H 0.030 0.970 18 C 0.001 3.999 19 N -0.953 5.953 20 Si 0.953 3.047 21 H -0.265 1.265 22 H -0.283 1.283 23 H -0.247 1.247 24 H 0.058 0.942 25 H 0.056 0.944 26 H 0.063 0.937 27 H 0.053 0.947 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.051 0.949 31 H 0.396 0.604 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.040 0.960 36 H 0.042 0.958 37 H 0.075 0.925 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.045 0.955 41 H 0.048 0.952 42 H 0.017 0.983 43 H 0.017 0.983 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.915 16.119 -10.483 28.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.188 4.188 3 C -0.034 4.034 4 H 0.110 0.890 5 C -0.110 4.110 6 H 0.097 0.903 7 C 0.011 3.989 8 O -0.400 6.400 9 C -0.146 4.146 10 C -0.098 4.098 11 N -0.243 5.243 12 C -0.076 4.076 13 C -0.145 4.145 14 C -0.132 4.132 15 C -0.049 4.049 16 C -0.573 4.573 17 H 0.048 0.952 18 C -0.195 4.195 19 N -0.594 5.594 20 Si 0.776 3.224 21 H -0.190 1.190 22 H -0.208 1.208 23 H -0.171 1.171 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.082 0.918 27 H 0.072 0.928 28 H 0.085 0.915 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.246 0.754 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.094 0.906 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.035 0.965 43 H 0.035 0.965 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -20.260 15.970 -10.334 27.791 hybrid contribution 0.380 -0.525 -0.062 0.651 sum -19.880 15.445 -10.396 27.237 Atomic orbital electron populations 1.21714 0.94032 1.02158 1.02319 1.22184 0.97773 0.96947 1.01893 1.22497 0.87920 0.95445 0.97538 0.88996 1.22020 0.96283 0.96758 0.95954 0.90254 1.22201 0.97381 0.94049 0.85226 1.86424 1.75185 1.47417 1.30965 1.22452 0.93309 0.99432 0.99380 1.23278 0.99633 0.98487 0.88410 1.64978 1.06237 1.37414 1.15719 1.22287 0.94820 0.91218 0.99232 1.21549 0.94823 0.97681 1.00400 1.21282 0.95500 0.96962 0.99434 1.19532 0.94662 0.94846 0.95858 1.21566 0.92399 1.06796 1.36507 0.95157 1.26073 1.00879 0.97552 0.95028 1.70079 1.15429 1.29134 1.44777 0.85608 0.77654 0.78965 0.80123 1.19049 1.20843 1.17086 0.92270 0.92443 0.91809 0.92831 0.91485 0.92323 0.93033 0.75379 0.90856 0.90831 0.90293 0.94164 0.93983 0.90648 0.91859 0.92347 0.93649 0.93320 0.96471 0.96467 0.92486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.67 71.98 0.70 -1.41 16 2 C -0.15 -2.78 3.97 30.59 0.12 -2.65 16 3 C 0.07 1.41 2.85 45.06 0.13 1.54 16 4 H 0.09 1.65 7.68 -2.39 -0.02 1.63 16 5 C -0.09 -1.59 2.48 -9.91 -0.02 -1.62 16 6 H 0.08 1.46 6.85 -2.39 -0.02 1.44 16 7 C 0.09 1.26 6.13 71.98 0.44 1.70 16 8 O -0.59 -8.67 13.55 -148.98 -2.02 -10.68 16 9 C -0.11 -2.08 6.51 31.80 0.21 -1.87 16 10 C 0.03 0.67 5.37 86.65 0.46 1.13 16 11 N -0.52 -12.32 5.34 -858.09 -4.58 -16.89 16 12 C 0.05 1.39 3.69 86.30 0.32 1.71 16 13 C -0.11 -3.38 5.05 30.60 0.15 -3.22 16 14 C -0.09 -3.73 5.15 30.59 0.16 -3.57 16 15 C -0.01 -0.56 4.04 29.85 0.12 -0.44 16 16 C -0.53 -31.94 9.66 25.60 0.25 -31.69 16 17 H 0.03 1.98 7.99 -2.91 -0.02 1.96 16 18 C 0.00 0.06 5.47 84.65 0.46 0.53 16 19 N -0.95 -61.27 13.96 21.45 0.30 -60.97 16 20 Si 0.95 45.43 27.47 68.60 1.88 47.32 16 21 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 22 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 23 H -0.25 -10.98 6.54 99.48 0.65 -10.33 16 24 H 0.06 0.81 7.11 -2.39 -0.02 0.80 16 25 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.05 1.09 7.93 -2.39 -0.02 1.07 16 28 H 0.07 1.37 6.19 -2.39 -0.01 1.36 16 29 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.05 0.72 7.99 -2.39 -0.02 0.70 16 31 H 0.40 2.18 9.12 -74.06 -0.68 1.50 16 32 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.07 1.42 7.76 -2.39 -0.02 1.40 16 34 H 0.08 1.85 7.66 -2.39 -0.02 1.83 16 35 H 0.04 0.94 8.01 -2.39 -0.02 0.92 16 36 H 0.04 1.11 6.18 -2.39 -0.01 1.10 16 37 H 0.08 1.98 7.88 -2.39 -0.02 1.96 16 38 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.06 1.82 6.92 -2.39 -0.02 1.80 16 40 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.02 0.81 7.20 -2.39 -0.02 0.79 16 43 H 0.02 0.80 7.57 -2.38 -0.02 0.79 16 44 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 Total: -1.00 -69.04 336.46 -0.70 -69.74 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: 0.21 Total: 11.36 kcal Atomic # 6 Polarization: -43.36 SS G_CDS: 3.50 Total: -39.87 kcal Atomic # 7 Polarization: -73.59 SS G_CDS: -4.28 Total: -77.87 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: -2.02 Total: -10.68 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 1.88 Total: 47.32 kcal Total: -69.04 -0.70 -69.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386361044.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.924 kcal (2) G-P(sol) polarization free energy of solvation -69.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds