Wall clock time and date at job start Mon Mar 30 2020 07:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47042 * 2 1 4 4 H 1.09002 * 110.06482 * 56.64865 * 3 2 1 5 5 C 1.53990 * 109.91945 * 177.85202 * 3 2 1 6 6 H 1.08993 * 110.31231 * 239.59594 * 5 3 2 7 7 C 1.53007 * 110.30679 * 1.66394 * 5 3 2 8 8 O 1.42895 * 109.47035 * 184.99963 * 7 5 3 9 9 C 1.54596 * 105.14049 * 120.57544 * 5 3 2 10 10 C 1.54933 * 102.92087 * 21.96215 * 9 5 3 11 11 N 1.47898 * 109.91946 * 295.44368 * 3 2 1 12 12 C 1.46899 * 111.00248 * 94.79760 * 11 3 2 13 13 C 1.52999 * 109.47215 * 175.69045 * 12 11 3 14 14 C 1.53005 * 109.47148 * 180.02562 * 13 12 11 15 15 C 1.52999 * 109.47148 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.46892 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00111 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99838 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00212 * 180.02562 * 18 16 15 20 20 Si 1.86805 * 119.99907 * 359.97438 * 18 16 15 21 21 H 1.48496 * 109.46946 * 90.00262 * 20 18 16 22 22 H 1.48500 * 109.47014 * 210.00055 * 20 18 16 23 23 H 1.48495 * 109.46978 * 330.00103 * 20 18 16 24 24 H 1.08999 * 109.46945 * 307.15253 * 1 2 3 25 25 H 1.08998 * 109.47130 * 67.14768 * 1 2 3 26 26 H 1.08997 * 109.47169 * 187.14741 * 1 2 3 27 27 H 1.08993 * 109.47205 * 240.00184 * 2 1 3 28 28 H 1.08995 * 109.47306 * 119.99514 * 2 1 3 29 29 H 1.08998 * 109.46906 * 304.99846 * 7 5 3 30 30 H 1.08997 * 109.47394 * 64.99561 * 7 5 3 31 31 H 0.96708 * 113.99905 * 179.97438 * 8 7 5 32 32 H 1.09004 * 110.72367 * 140.32195 * 9 5 3 33 33 H 1.09004 * 110.72674 * 263.42246 * 9 5 3 34 34 H 1.08998 * 110.66892 * 204.15329 * 10 9 5 35 35 H 1.09000 * 110.67264 * 81.01590 * 10 9 5 36 36 H 1.09007 * 109.46624 * 55.69630 * 12 11 3 37 37 H 1.08993 * 109.47404 * 295.69875 * 12 11 3 38 38 H 1.08993 * 109.47347 * 60.00724 * 13 12 11 39 39 H 1.09002 * 109.47249 * 300.00220 * 13 12 11 40 40 H 1.09006 * 109.46500 * 60.00146 * 14 13 12 41 41 H 1.08993 * 109.47144 * 300.00629 * 14 13 12 42 42 H 1.09002 * 109.47249 * 299.99861 * 15 14 13 43 43 H 1.08994 * 109.46894 * 60.00091 * 15 14 13 44 44 H 0.96994 * 120.00144 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6340 1.9827 0.8552 5 6 3.5789 1.4549 0.0543 6 1 3.9219 1.9863 0.9420 7 6 4.1219 0.0245 0.0497 8 8 5.5407 0.0531 0.2175 9 6 4.0220 2.2012 -1.2251 10 6 2.7662 3.0294 -1.5957 11 7 1.6447 2.1167 -1.2556 12 6 0.3923 2.8641 -1.0802 13 6 0.0730 3.6328 -2.3640 14 6 -1.2312 4.4118 -2.1810 15 6 -1.5502 5.1809 -3.4646 16 6 -2.8343 5.9486 -3.2841 17 1 -3.3692 5.8938 -2.3475 18 6 -3.3264 6.7210 -4.3148 19 7 -4.4468 7.3914 -4.1573 20 14 -2.4008 6.8164 -5.9347 21 1 -2.8792 5.7427 -6.8420 22 1 -2.6402 8.1398 -6.5644 23 1 -0.9473 6.6426 -5.6852 24 1 -0.3633 0.6206 0.8191 25 1 -0.3633 0.3991 -0.9470 26 1 -0.3633 -1.0196 0.1279 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5137 0.8900 29 1 3.6707 -0.5380 0.8669 30 1 3.8778 -0.4538 -0.8989 31 1 5.9537 -0.8213 0.2245 32 1 4.8681 2.8559 -1.0162 33 1 4.2693 1.4948 -2.0176 34 1 2.7611 3.2652 -2.6598 35 1 2.7157 3.9398 -0.9985 36 1 0.5012 3.5666 -0.2538 37 1 -0.4182 2.1689 -0.8618 38 1 -0.0359 2.9305 -3.1904 39 1 0.8835 4.3281 -2.5824 40 1 -1.1219 5.1141 -1.3546 41 1 -2.0418 3.7168 -1.9624 42 1 -0.7393 5.8760 -3.6827 43 1 -1.6592 4.4789 -4.2912 44 1 -4.7931 7.9345 -4.8824 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000386361046.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:01 Heat of formation + Delta-G solvation = -71.073563 kcal Electronic energy + Delta-G solvation = -19482.386469 eV Core-core repulsion = 16626.660044 eV Total energy + Delta-G solvation = -2855.726426 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.99917 -36.98334 -35.14733 -33.46843 -32.94270 -31.56949 -28.84766 -28.23222 -25.45581 -24.25862 -23.22247 -21.64967 -20.49523 -20.03656 -19.10254 -17.72914 -16.61188 -16.24670 -15.66520 -15.25883 -14.98120 -14.49455 -14.18542 -13.77647 -13.51600 -13.05511 -12.86027 -12.77146 -12.47902 -12.33235 -12.03619 -11.87594 -11.50237 -11.34031 -11.19486 -11.09793 -10.89762 -10.79548 -10.72000 -10.48461 -10.27586 -10.05985 -9.84952 -9.63716 -9.43874 -9.11996 -8.50096 -8.39554 -6.00808 -3.98273 3.33707 3.40664 3.45346 3.85094 3.93512 4.39919 4.48863 4.49925 4.81932 4.97534 5.04250 5.10459 5.16795 5.26084 5.30080 5.33295 5.36615 5.44256 5.49265 5.56842 5.67794 5.80034 5.82980 5.88573 5.91192 5.94832 6.01582 6.07211 6.10238 6.18001 6.34136 6.40803 6.68749 6.79967 6.93123 6.96548 7.16469 7.32779 7.37470 7.50478 7.84616 8.58654 9.04560 9.62317 11.12879 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.036348 B = 0.003675 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.156177 B = 7617.422829 C = 8104.401316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.112 4.112 3 C 0.071 3.929 4 H 0.055 0.945 5 C -0.095 4.095 6 H 0.079 0.921 7 C 0.083 3.917 8 O -0.577 6.577 9 C -0.111 4.111 10 C 0.032 3.968 11 N -0.510 5.510 12 C 0.041 3.959 13 C -0.118 4.118 14 C -0.101 4.101 15 C -0.013 4.013 16 C -0.519 4.519 17 H 0.070 0.930 18 C 0.064 3.936 19 N -0.906 5.906 20 Si 0.881 3.119 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.266 1.266 24 H 0.050 0.950 25 H 0.068 0.932 26 H 0.050 0.950 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.377 0.623 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.045 0.955 36 H 0.031 0.969 37 H 0.082 0.918 38 H 0.064 0.936 39 H 0.055 0.945 40 H 0.050 0.950 41 H 0.052 0.948 42 H 0.013 0.987 43 H 0.011 0.989 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.967 -16.593 9.017 26.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.149 4.149 3 C -0.038 4.038 4 H 0.073 0.927 5 C -0.115 4.115 6 H 0.097 0.903 7 C 0.006 3.994 8 O -0.382 6.382 9 C -0.149 4.149 10 C -0.095 4.095 11 N -0.234 5.234 12 C -0.086 4.086 13 C -0.156 4.156 14 C -0.139 4.139 15 C -0.051 4.051 16 C -0.557 4.557 17 H 0.089 0.911 18 C -0.136 4.136 19 N -0.545 5.545 20 Si 0.708 3.292 21 H -0.203 1.203 22 H -0.215 1.215 23 H -0.190 1.190 24 H 0.069 0.931 25 H 0.087 0.913 26 H 0.069 0.931 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.224 0.776 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.103 0.897 35 H 0.063 0.937 36 H 0.049 0.951 37 H 0.100 0.900 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.071 0.929 42 H 0.032 0.968 43 H 0.029 0.971 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 17.619 -16.195 8.534 25.407 hybrid contribution 0.438 0.220 -0.222 0.538 sum 18.057 -15.975 8.312 25.501 Atomic orbital electron populations 1.21895 0.95645 1.01177 1.02575 1.21640 0.96435 0.95293 1.01581 1.22400 0.92950 0.96139 0.92290 0.92697 1.21987 0.94336 0.95522 0.99606 0.90262 1.22452 0.80458 0.96710 0.99811 1.86472 1.20950 1.34165 1.96615 1.22485 0.97085 0.98723 0.96603 1.23251 0.90072 0.94453 1.01745 1.64745 1.02701 1.26927 1.29052 1.22575 0.91860 0.96148 0.98043 1.21712 0.98927 0.98454 0.96472 1.21421 0.94546 0.98014 0.99942 1.19560 0.97037 0.95138 0.93338 1.21196 1.06251 1.26950 1.01337 0.91148 1.25052 0.94769 0.95115 0.98712 1.69921 1.20722 1.30912 1.32995 0.86757 0.81065 0.77280 0.84063 1.20305 1.21461 1.19018 0.93134 0.91278 0.93133 0.91068 0.91963 0.93278 0.92950 0.77625 0.91155 0.90806 0.89685 0.93659 0.95052 0.89987 0.91727 0.92641 0.93124 0.92874 0.96822 0.97105 0.92811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 8.59 37.16 0.32 -1.22 16 2 C -0.11 -1.02 4.44 -26.73 -0.12 -1.14 16 3 C 0.07 0.75 2.63 -66.64 -0.18 0.57 16 4 H 0.06 0.61 7.67 -51.93 -0.40 0.21 16 5 C -0.10 -0.94 3.26 -89.26 -0.29 -1.23 16 6 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 7 C 0.08 0.69 5.17 37.16 0.19 0.88 16 8 O -0.58 -4.96 13.55 -35.23 -0.48 -5.44 16 9 C -0.11 -1.16 6.50 -24.87 -0.16 -1.32 16 10 C 0.03 0.39 5.34 -1.90 -0.01 0.38 16 11 N -0.51 -6.33 4.81 -222.58 -1.07 -7.40 16 12 C 0.04 0.57 4.47 -3.82 -0.02 0.56 16 13 C -0.12 -1.93 5.03 -26.73 -0.13 -2.07 16 14 C -0.10 -2.03 5.15 -26.73 -0.14 -2.17 16 15 C -0.01 -0.33 4.04 -27.88 -0.11 -0.44 16 16 C -0.52 -15.20 9.66 -34.44 -0.33 -15.54 16 17 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 18 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 19 N -0.91 -28.53 13.96 55.43 0.77 -27.75 16 20 Si 0.88 22.24 27.47 -169.99 -4.67 17.57 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 23 H -0.27 -6.46 6.54 56.52 0.37 -6.09 16 24 H 0.05 0.50 8.12 -51.93 -0.42 0.08 16 25 H 0.07 0.79 6.32 -51.93 -0.33 0.46 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.67 7.00 -51.93 -0.36 0.31 16 28 H 0.06 0.48 6.54 -51.93 -0.34 0.14 16 29 H 0.05 0.35 6.35 -51.93 -0.33 0.02 16 30 H 0.05 0.42 7.01 -51.93 -0.36 0.06 16 31 H 0.38 1.53 9.12 45.56 0.42 1.94 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.78 7.76 -51.93 -0.40 0.37 16 34 H 0.08 1.04 7.65 -51.93 -0.40 0.64 16 35 H 0.05 0.55 8.02 -51.93 -0.42 0.14 16 36 H 0.03 0.44 7.97 -51.92 -0.41 0.03 16 37 H 0.08 1.12 5.35 -51.93 -0.28 0.84 16 38 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.05 0.90 6.90 -51.93 -0.36 0.54 16 40 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.01 0.33 7.20 -51.93 -0.37 -0.04 16 43 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 44 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 331.98 15.07 5.00 5.00 Total: -1.00 -32.13 331.98 -8.80 -40.93 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -7.28 Total: -2.00 kcal Atomic # 6 Polarization: -19.84 SS G_CDS: -1.08 Total: -20.92 kcal Atomic # 7 Polarization: -34.86 SS G_CDS: -0.30 Total: -35.16 kcal Atomic # 8 Polarization: -4.96 SS G_CDS: -0.48 Total: -5.44 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.67 Total: 17.57 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.13 -8.80 -40.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386361046.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.139 kcal (2) G-P(sol) polarization free energy of solvation -32.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds