Wall clock time and date at job start Mon Mar 30 2020 07:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47042 * 2 1 4 4 H 1.09002 * 110.06482 * 56.64865 * 3 2 1 5 5 C 1.53990 * 109.91945 * 177.85202 * 3 2 1 6 6 H 1.08993 * 110.31231 * 239.59594 * 5 3 2 7 7 C 1.53007 * 110.30679 * 1.66394 * 5 3 2 8 8 O 1.42895 * 109.47035 * 184.99963 * 7 5 3 9 9 C 1.54596 * 105.14049 * 120.57544 * 5 3 2 10 10 C 1.54933 * 102.92087 * 21.96215 * 9 5 3 11 11 N 1.47898 * 109.91946 * 295.44368 * 3 2 1 12 12 C 1.46899 * 111.00248 * 94.79760 * 11 3 2 13 13 C 1.52999 * 109.47215 * 175.69045 * 12 11 3 14 14 C 1.53005 * 109.47148 * 180.02562 * 13 12 11 15 15 C 1.52999 * 109.47148 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.46892 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00111 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99838 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00212 * 180.02562 * 18 16 15 20 20 Si 1.86805 * 119.99907 * 359.97438 * 18 16 15 21 21 H 1.48496 * 109.46946 * 90.00262 * 20 18 16 22 22 H 1.48500 * 109.47014 * 210.00055 * 20 18 16 23 23 H 1.48495 * 109.46978 * 330.00103 * 20 18 16 24 24 H 1.08999 * 109.46945 * 307.15253 * 1 2 3 25 25 H 1.08998 * 109.47130 * 67.14768 * 1 2 3 26 26 H 1.08997 * 109.47169 * 187.14741 * 1 2 3 27 27 H 1.08993 * 109.47205 * 240.00184 * 2 1 3 28 28 H 1.08995 * 109.47306 * 119.99514 * 2 1 3 29 29 H 1.08998 * 109.46906 * 304.99846 * 7 5 3 30 30 H 1.08997 * 109.47394 * 64.99561 * 7 5 3 31 31 H 0.96708 * 113.99905 * 179.97438 * 8 7 5 32 32 H 1.09004 * 110.72367 * 140.32195 * 9 5 3 33 33 H 1.09004 * 110.72674 * 263.42246 * 9 5 3 34 34 H 1.08998 * 110.66892 * 204.15329 * 10 9 5 35 35 H 1.09000 * 110.67264 * 81.01590 * 10 9 5 36 36 H 1.09007 * 109.46624 * 55.69630 * 12 11 3 37 37 H 1.08993 * 109.47404 * 295.69875 * 12 11 3 38 38 H 1.08993 * 109.47347 * 60.00724 * 13 12 11 39 39 H 1.09002 * 109.47249 * 300.00220 * 13 12 11 40 40 H 1.09006 * 109.46500 * 60.00146 * 14 13 12 41 41 H 1.08993 * 109.47144 * 300.00629 * 14 13 12 42 42 H 1.09002 * 109.47249 * 299.99861 * 15 14 13 43 43 H 1.08994 * 109.46894 * 60.00091 * 15 14 13 44 44 H 0.96994 * 120.00144 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6340 1.9827 0.8552 5 6 3.5789 1.4549 0.0543 6 1 3.9219 1.9863 0.9420 7 6 4.1219 0.0245 0.0497 8 8 5.5407 0.0531 0.2175 9 6 4.0220 2.2012 -1.2251 10 6 2.7662 3.0294 -1.5957 11 7 1.6447 2.1167 -1.2556 12 6 0.3923 2.8641 -1.0802 13 6 0.0730 3.6328 -2.3640 14 6 -1.2312 4.4118 -2.1810 15 6 -1.5502 5.1809 -3.4646 16 6 -2.8343 5.9486 -3.2841 17 1 -3.3692 5.8938 -2.3475 18 6 -3.3264 6.7210 -4.3148 19 7 -4.4468 7.3914 -4.1573 20 14 -2.4008 6.8164 -5.9347 21 1 -2.8792 5.7427 -6.8420 22 1 -2.6402 8.1398 -6.5644 23 1 -0.9473 6.6426 -5.6852 24 1 -0.3633 0.6206 0.8191 25 1 -0.3633 0.3991 -0.9470 26 1 -0.3633 -1.0196 0.1279 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5137 0.8900 29 1 3.6707 -0.5380 0.8669 30 1 3.8778 -0.4538 -0.8989 31 1 5.9537 -0.8213 0.2245 32 1 4.8681 2.8559 -1.0162 33 1 4.2693 1.4948 -2.0176 34 1 2.7611 3.2652 -2.6598 35 1 2.7157 3.9398 -0.9985 36 1 0.5012 3.5666 -0.2538 37 1 -0.4182 2.1689 -0.8618 38 1 -0.0359 2.9305 -3.1904 39 1 0.8835 4.3281 -2.5824 40 1 -1.1219 5.1141 -1.3546 41 1 -2.0418 3.7168 -1.9624 42 1 -0.7393 5.8760 -3.6827 43 1 -1.6592 4.4789 -4.2912 44 1 -4.7931 7.9345 -4.8824 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000386361046.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:01 Heat of formation + Delta-G solvation = -93.713623 kcal Electronic energy + Delta-G solvation = -19483.368216 eV Core-core repulsion = 16626.660044 eV Total energy + Delta-G solvation = -2856.708172 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.85935 -37.74756 -36.58658 -34.83245 -34.16899 -33.11821 -30.24365 -29.24242 -26.77806 -25.20023 -24.44325 -22.70295 -21.98687 -21.39192 -19.95059 -18.83760 -18.35506 -17.09465 -16.73197 -16.33110 -16.20945 -15.81341 -15.52289 -14.80494 -14.66540 -14.33637 -14.17520 -13.94706 -13.74942 -13.41289 -13.20480 -13.15050 -12.91366 -12.58025 -12.42229 -12.20060 -12.02412 -11.92390 -11.76076 -11.65568 -11.54882 -11.38957 -11.25194 -11.21229 -11.07519 -10.77149 -10.66902 -9.37282 -8.30512 -6.34657 1.35192 1.37043 1.49617 2.35821 2.96149 3.04795 3.25294 3.61965 3.71764 4.02515 4.09676 4.14963 4.22767 4.33528 4.38761 4.44335 4.48987 4.52464 4.57416 4.64620 4.69686 4.75082 4.76332 4.87917 4.89847 5.03596 5.07938 5.11136 5.14155 5.16032 5.19372 5.23455 5.27387 5.38794 5.50788 5.57000 5.63214 5.67474 5.99978 6.13193 6.28506 6.73535 6.95375 7.30213 8.86571 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.036348 B = 0.003675 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.156177 B = 7617.422829 C = 8104.401316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.107 4.107 3 C 0.070 3.930 4 H 0.049 0.951 5 C -0.095 4.095 6 H 0.075 0.925 7 C 0.087 3.913 8 O -0.595 6.595 9 C -0.105 4.105 10 C 0.029 3.971 11 N -0.514 5.514 12 C 0.050 3.950 13 C -0.105 4.105 14 C -0.094 4.094 15 C -0.011 4.011 16 C -0.535 4.535 17 H 0.030 0.970 18 C 0.001 3.999 19 N -0.953 5.953 20 Si 0.954 3.046 21 H -0.265 1.265 22 H -0.283 1.283 23 H -0.247 1.247 24 H 0.046 0.954 25 H 0.050 0.950 26 H 0.062 0.938 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.064 0.936 30 H 0.055 0.945 31 H 0.396 0.604 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.080 0.920 35 H 0.039 0.961 36 H 0.028 0.972 37 H 0.084 0.916 38 H 0.065 0.935 39 H 0.058 0.942 40 H 0.043 0.957 41 H 0.048 0.952 42 H 0.017 0.983 43 H 0.018 0.982 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.127 -18.195 8.507 28.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.144 4.144 3 C -0.038 4.038 4 H 0.067 0.933 5 C -0.114 4.114 6 H 0.093 0.907 7 C 0.010 3.990 8 O -0.404 6.404 9 C -0.143 4.143 10 C -0.099 4.099 11 N -0.238 5.238 12 C -0.078 4.078 13 C -0.143 4.143 14 C -0.132 4.132 15 C -0.048 4.048 16 C -0.573 4.573 17 H 0.048 0.952 18 C -0.195 4.195 19 N -0.594 5.594 20 Si 0.777 3.223 21 H -0.190 1.190 22 H -0.208 1.208 23 H -0.171 1.171 24 H 0.065 0.935 25 H 0.069 0.931 26 H 0.081 0.919 27 H 0.090 0.910 28 H 0.101 0.899 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.246 0.754 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.057 0.943 36 H 0.046 0.954 37 H 0.103 0.897 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.062 0.938 41 H 0.067 0.933 42 H 0.035 0.965 43 H 0.036 0.964 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 19.799 -17.827 8.041 27.829 hybrid contribution -0.284 0.723 0.027 0.778 sum 19.515 -17.104 8.068 27.175 Atomic orbital electron populations 1.21878 0.96276 1.01724 1.01386 1.21633 0.95771 0.94406 1.02623 1.22459 0.93610 0.96689 0.91086 0.93253 1.21973 0.93713 0.96747 0.98994 0.90687 1.22388 0.80535 0.95493 1.00590 1.86418 1.21109 1.36193 1.96647 1.22434 0.96377 0.98579 0.96946 1.23279 0.90728 0.94496 1.01374 1.64748 1.02177 1.26630 1.30274 1.22400 0.92997 0.96030 0.96402 1.21527 0.96694 0.98230 0.97840 1.21289 0.96556 0.97782 0.97600 1.19524 0.94524 0.95129 0.95657 1.21565 1.07988 1.27802 0.99946 0.95199 1.26076 0.95710 0.94549 1.03192 1.70074 1.22703 1.32021 1.34625 0.85604 0.80362 0.77759 0.78601 1.19014 1.20850 1.17083 0.93465 0.93105 0.91929 0.90952 0.89903 0.91763 0.92645 0.75380 0.90875 0.90741 0.90137 0.94254 0.95415 0.89733 0.91668 0.92346 0.93785 0.93316 0.96476 0.96409 0.92476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.81 8.59 71.98 0.62 -2.19 16 2 C -0.11 -1.70 4.44 30.60 0.14 -1.57 16 3 C 0.07 1.35 2.63 45.06 0.12 1.47 16 4 H 0.05 1.02 7.67 -2.39 -0.02 1.00 16 5 C -0.10 -1.69 3.26 -9.91 -0.03 -1.72 16 6 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 7 C 0.09 1.20 5.17 71.98 0.37 1.58 16 8 O -0.60 -8.75 13.55 -148.98 -2.02 -10.77 16 9 C -0.11 -2.02 6.50 31.80 0.21 -1.81 16 10 C 0.03 0.65 5.34 86.65 0.46 1.11 16 11 N -0.51 -12.05 4.81 -858.11 -4.13 -16.17 16 12 C 0.05 1.33 4.47 86.30 0.39 1.72 16 13 C -0.11 -3.33 5.03 30.60 0.15 -3.17 16 14 C -0.09 -3.76 5.15 30.60 0.16 -3.61 16 15 C -0.01 -0.53 4.04 29.85 0.12 -0.41 16 16 C -0.54 -31.99 9.66 25.60 0.25 -31.74 16 17 H 0.03 1.96 7.99 -2.91 -0.02 1.93 16 18 C 0.00 0.07 5.47 84.66 0.46 0.53 16 19 N -0.95 -61.30 13.96 21.45 0.30 -61.00 16 20 Si 0.95 45.41 27.47 68.60 1.88 47.30 16 21 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 22 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 23 H -0.25 -10.96 6.54 99.48 0.65 -10.31 16 24 H 0.05 0.87 8.12 -2.39 -0.02 0.85 16 25 H 0.05 1.10 6.32 -2.39 -0.02 1.09 16 26 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.07 1.17 7.00 -2.39 -0.02 1.15 16 28 H 0.08 1.00 6.54 -2.39 -0.02 0.99 16 29 H 0.06 0.69 6.35 -2.39 -0.02 0.68 16 30 H 0.06 0.74 7.01 -2.39 -0.02 0.72 16 31 H 0.40 2.16 9.12 -74.05 -0.68 1.49 16 32 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 33 H 0.07 1.42 7.76 -2.38 -0.02 1.41 16 34 H 0.08 1.87 7.65 -2.39 -0.02 1.85 16 35 H 0.04 0.93 8.02 -2.39 -0.02 0.91 16 36 H 0.03 0.76 7.97 -2.38 -0.02 0.74 16 37 H 0.08 2.23 5.35 -2.39 -0.01 2.22 16 38 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.06 1.82 6.90 -2.39 -0.02 1.80 16 40 H 0.04 1.79 8.14 -2.38 -0.02 1.77 16 41 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 42 H 0.02 0.81 7.20 -2.39 -0.02 0.79 16 43 H 0.02 0.83 7.57 -2.39 -0.02 0.81 16 44 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 Total: -1.00 -69.23 331.98 -0.33 -69.56 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: 0.22 Total: 10.90 kcal Atomic # 6 Polarization: -43.22 SS G_CDS: 3.41 Total: -39.81 kcal Atomic # 7 Polarization: -73.35 SS G_CDS: -3.83 Total: -77.18 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: -2.02 Total: -10.77 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 1.88 Total: 47.30 kcal Total: -69.23 -0.33 -69.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386361046.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.155 kcal (2) G-P(sol) polarization free energy of solvation -69.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds