Wall clock time and date at job start Mon Mar 30 2020 07:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47212 * 2 1 4 4 H 1.08989 * 110.06813 * 305.25091 * 3 2 1 5 5 C 1.53994 * 109.91349 * 184.04292 * 3 2 1 6 6 H 1.09000 * 110.30750 * 120.51256 * 5 3 2 7 7 C 1.53000 * 110.31195 * 358.34422 * 5 3 2 8 8 O 1.42895 * 109.47065 * 174.99766 * 7 5 3 9 9 C 1.54590 * 105.13996 * 239.42544 * 5 3 2 10 10 C 1.54932 * 102.92515 * 338.04587 * 9 5 3 11 11 N 1.47904 * 109.91329 * 66.46138 * 3 2 1 12 12 C 1.46906 * 110.99725 * 265.19327 * 11 3 2 13 13 C 1.52993 * 109.47378 * 170.00292 * 12 11 3 14 14 C 1.52996 * 109.47473 * 179.97438 * 13 12 11 15 15 C 1.53002 * 109.47346 * 179.97438 * 14 13 12 16 16 C 1.50696 * 109.46923 * 180.02562 * 15 14 13 17 17 H 1.07999 * 120.00202 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99746 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99981 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99783 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47028 * 60.00648 * 20 18 16 22 22 H 1.48503 * 109.46851 * 179.97438 * 20 18 16 23 23 H 1.48492 * 109.47412 * 300.00257 * 20 18 16 24 24 H 1.08999 * 109.47103 * 59.99197 * 1 2 3 25 25 H 1.08990 * 109.47673 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46665 * 299.99830 * 1 2 3 27 27 H 1.09000 * 109.46665 * 240.00170 * 2 1 3 28 28 H 1.08999 * 109.47103 * 120.00803 * 2 1 3 29 29 H 1.08996 * 109.46688 * 294.99793 * 7 5 3 30 30 H 1.09000 * 109.46987 * 54.99787 * 7 5 3 31 31 H 0.96707 * 113.99862 * 179.97438 * 8 7 5 32 32 H 1.08999 * 110.72414 * 96.40578 * 9 5 3 33 33 H 1.09006 * 110.72752 * 219.50931 * 9 5 3 34 34 H 1.09002 * 110.66772 * 278.97905 * 10 9 5 35 35 H 1.09003 * 110.67092 * 155.85001 * 10 9 5 36 36 H 1.09004 * 109.47040 * 290.00080 * 12 11 3 37 37 H 1.09000 * 109.47033 * 50.00032 * 12 11 3 38 38 H 1.09004 * 109.46862 * 299.99897 * 13 12 11 39 39 H 1.09004 * 109.46998 * 59.99419 * 13 12 11 40 40 H 1.08996 * 109.47261 * 300.00171 * 14 13 12 41 41 H 1.09000 * 109.46870 * 59.99782 * 14 13 12 42 42 H 1.08996 * 109.47407 * 300.00483 * 15 14 13 43 43 H 1.09000 * 109.46986 * 60.00254 * 15 14 13 44 44 H 0.96996 * 119.99725 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6077 1.9920 -0.8360 5 6 3.5765 1.4556 -0.1021 6 1 3.8919 1.9983 -0.9932 7 6 4.1191 0.0253 -0.1304 8 8 5.5320 0.0559 -0.3421 9 6 4.0596 2.1876 1.1710 10 6 2.8161 3.0115 1.5898 11 7 1.6844 2.1026 1.2749 12 6 0.4273 2.8518 1.1469 13 6 -0.0369 3.3095 2.5311 14 6 -1.3458 4.0903 2.3978 15 6 -1.8103 4.5475 3.7821 16 6 -3.0998 5.3160 3.6507 17 1 -3.5440 5.4634 2.6774 18 6 -3.7127 5.8312 4.7733 19 7 -3.1716 5.6522 5.9585 20 14 -5.3109 6.7845 4.6104 21 1 -6.3482 5.9119 4.0040 22 1 -5.7617 7.2281 5.9540 23 1 -5.0936 7.9708 3.7440 24 1 -0.3633 0.5140 -0.8899 25 1 -0.3634 -1.0275 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5140 0.8899 29 1 3.9046 -0.4635 0.8200 30 1 3.6424 -0.5282 -0.9394 31 1 5.9444 -0.8183 -0.3710 32 1 4.3283 1.4726 1.9485 33 1 4.9009 2.8424 0.9437 34 1 2.7473 3.9286 1.0047 35 1 2.8444 3.2356 2.6562 36 1 0.5864 3.7226 0.5108 37 1 -0.3340 2.2110 0.7019 38 1 -0.1960 2.4387 3.1672 39 1 0.7244 3.9502 2.9761 40 1 -1.1863 4.9610 1.7618 41 1 -2.1072 3.4499 1.9526 42 1 -1.9699 3.6766 4.4177 43 1 -1.0490 5.1878 4.2276 44 1 -3.6030 6.0143 6.7482 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000386361050.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:04 Heat of formation + Delta-G solvation = -73.834282 kcal Electronic energy + Delta-G solvation = -19421.288168 eV Core-core repulsion = 16565.442029 eV Total energy + Delta-G solvation = -2855.846139 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.93656 -36.92426 -34.99907 -33.42802 -32.95631 -31.42167 -28.65080 -27.94966 -25.31364 -24.21544 -23.21715 -21.58235 -20.67384 -20.02859 -19.06566 -17.68653 -16.25466 -16.10521 -15.54923 -15.25725 -14.88867 -14.41175 -14.32786 -13.76137 -13.46513 -12.97543 -12.79515 -12.46913 -12.44717 -12.30894 -11.83799 -11.74371 -11.37802 -11.22838 -11.10542 -10.99584 -10.80550 -10.74523 -10.49293 -10.47294 -10.41510 -10.14069 -9.99842 -9.57109 -9.21796 -8.97623 -8.34278 -8.29587 -5.95083 -3.97276 3.35702 3.39822 3.42416 3.89103 3.98509 4.44159 4.49685 4.53866 4.86767 5.01617 5.07774 5.15704 5.20891 5.31574 5.35348 5.40068 5.42259 5.48075 5.60330 5.62356 5.72072 5.84183 5.90200 5.95944 5.98660 6.00409 6.09127 6.14979 6.19793 6.26890 6.41646 6.57372 6.84689 7.02271 7.03659 7.12963 7.29833 7.35955 7.74042 7.90735 8.06359 8.49129 9.10138 9.66300 11.16262 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.042764 B = 0.003379 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.599988 B = 8283.265974 C = 8656.999569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.112 4.112 3 C 0.071 3.929 4 H 0.054 0.946 5 C -0.095 4.095 6 H 0.078 0.922 7 C 0.083 3.917 8 O -0.577 6.577 9 C -0.111 4.111 10 C 0.033 3.967 11 N -0.509 5.509 12 C 0.040 3.960 13 C -0.110 4.110 14 C -0.109 4.109 15 C 0.022 3.978 16 C -0.521 4.521 17 H 0.053 0.947 18 C 0.056 3.944 19 N -0.896 5.896 20 Si 0.891 3.109 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 H 0.048 0.952 25 H 0.050 0.950 26 H 0.072 0.928 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.053 0.947 30 H 0.049 0.951 31 H 0.377 0.623 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.044 0.956 35 H 0.085 0.915 36 H 0.031 0.969 37 H 0.080 0.920 38 H 0.063 0.937 39 H 0.054 0.946 40 H 0.043 0.957 41 H 0.046 0.954 42 H 0.015 0.985 43 H 0.014 0.986 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.803 -12.399 -13.234 23.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.150 4.150 3 C -0.038 4.038 4 H 0.072 0.928 5 C -0.114 4.114 6 H 0.097 0.903 7 C 0.006 3.994 8 O -0.382 6.382 9 C -0.149 4.149 10 C -0.095 4.095 11 N -0.233 5.233 12 C -0.088 4.088 13 C -0.148 4.148 14 C -0.147 4.147 15 C -0.015 4.015 16 C -0.559 4.559 17 H 0.071 0.929 18 C -0.145 4.145 19 N -0.536 5.536 20 Si 0.719 3.281 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 H 0.067 0.933 25 H 0.069 0.931 26 H 0.091 0.909 27 H 0.080 0.920 28 H 0.090 0.910 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.224 0.776 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.062 0.938 35 H 0.104 0.896 36 H 0.049 0.951 37 H 0.098 0.902 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.062 0.938 41 H 0.064 0.936 42 H 0.034 0.966 43 H 0.032 0.968 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 14.563 -12.088 -12.640 22.759 hybrid contribution -0.803 0.631 -0.653 1.212 sum 13.761 -11.457 -13.293 22.301 Atomic orbital electron populations 1.21930 0.95696 1.01501 1.02472 1.21648 0.96406 0.95315 1.01605 1.22359 0.93077 0.96222 0.92128 0.92810 1.21981 0.94330 0.95546 0.99577 0.90320 1.22457 0.80570 0.96725 0.99692 1.86469 1.21597 1.34127 1.96031 1.22483 0.97045 0.98839 0.96513 1.23272 0.90079 0.94303 1.01830 1.64725 1.02503 1.27622 1.28499 1.22617 0.91276 0.96019 0.98871 1.21592 0.98252 1.00078 0.94872 1.21601 0.94289 0.97852 1.01003 1.19073 0.95687 0.96101 0.90619 1.21263 1.07641 1.34007 0.92984 0.92858 1.25033 0.97613 0.96443 0.95423 1.69959 1.39566 1.46059 0.97990 0.86676 0.83964 0.80392 0.77064 1.20274 1.21301 1.20295 0.93294 0.93052 0.90945 0.91984 0.91004 0.92902 0.93273 0.77639 0.90782 0.91164 0.93787 0.89644 0.95103 0.90217 0.91786 0.92746 0.93787 0.93561 0.96642 0.96772 0.93006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 8.80 37.16 0.33 -1.34 16 2 C -0.11 -1.09 4.44 -26.73 -0.12 -1.21 16 3 C 0.07 0.78 2.61 -66.64 -0.17 0.60 16 4 H 0.05 0.61 7.77 -51.94 -0.40 0.21 16 5 C -0.10 -0.97 3.26 -89.27 -0.29 -1.26 16 6 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 7 C 0.08 0.71 5.17 37.16 0.19 0.91 16 8 O -0.58 -5.13 13.55 -35.23 -0.48 -5.61 16 9 C -0.11 -1.20 6.50 -24.88 -0.16 -1.36 16 10 C 0.03 0.41 5.91 -1.90 -0.01 0.40 16 11 N -0.51 -6.65 4.72 -222.58 -1.05 -7.70 16 12 C 0.04 0.58 4.24 -3.82 -0.02 0.56 16 13 C -0.11 -1.94 5.30 -26.74 -0.14 -2.08 16 14 C -0.11 -2.30 5.15 -26.73 -0.14 -2.44 16 15 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 16 C -0.52 -15.15 9.11 -34.44 -0.31 -15.46 16 17 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.90 -27.54 13.29 55.43 0.74 -26.81 16 20 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.07 0.90 5.91 -51.93 -0.31 0.59 16 27 H 0.06 0.50 6.41 -51.93 -0.33 0.17 16 28 H 0.07 0.73 7.11 -51.93 -0.37 0.36 16 29 H 0.05 0.45 7.05 -51.93 -0.37 0.09 16 30 H 0.05 0.36 6.30 -51.93 -0.33 0.04 16 31 H 0.38 1.63 9.12 45.56 0.42 2.05 16 32 H 0.07 0.81 7.76 -51.93 -0.40 0.41 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.04 0.55 7.81 -51.93 -0.41 0.14 16 35 H 0.09 1.10 7.80 -51.93 -0.41 0.70 16 36 H 0.03 0.45 7.83 -51.93 -0.41 0.05 16 37 H 0.08 1.13 5.22 -51.93 -0.27 0.86 16 38 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.05 0.97 7.37 -51.93 -0.38 0.59 16 40 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 336.16 15.07 5.07 5.07 Total: -1.00 -31.71 336.16 -9.14 -40.85 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -7.31 Total: -2.14 kcal Atomic # 6 Polarization: -19.60 SS G_CDS: -1.08 Total: -20.69 kcal Atomic # 7 Polarization: -34.19 SS G_CDS: -0.31 Total: -34.51 kcal Atomic # 8 Polarization: -5.13 SS G_CDS: -0.48 Total: -5.61 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.71 -9.14 -40.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386361050.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.989 kcal (2) G-P(sol) polarization free energy of solvation -31.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds