Wall clock time and date at job start Mon Mar 30 2020 07:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47212 * 2 1 4 4 H 1.08989 * 110.06813 * 305.25091 * 3 2 1 5 5 C 1.53994 * 109.91349 * 184.04292 * 3 2 1 6 6 H 1.09000 * 110.30750 * 120.51256 * 5 3 2 7 7 C 1.53000 * 110.31195 * 358.34422 * 5 3 2 8 8 O 1.42895 * 109.47065 * 174.99766 * 7 5 3 9 9 C 1.54590 * 105.13996 * 239.42544 * 5 3 2 10 10 C 1.54932 * 102.92515 * 338.04587 * 9 5 3 11 11 N 1.47904 * 109.91329 * 66.46138 * 3 2 1 12 12 C 1.46906 * 110.99725 * 265.19327 * 11 3 2 13 13 C 1.52993 * 109.47378 * 170.00292 * 12 11 3 14 14 C 1.52996 * 109.47473 * 179.97438 * 13 12 11 15 15 C 1.53002 * 109.47346 * 179.97438 * 14 13 12 16 16 C 1.50696 * 109.46923 * 180.02562 * 15 14 13 17 17 H 1.07999 * 120.00202 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99746 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99981 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99783 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47028 * 60.00648 * 20 18 16 22 22 H 1.48503 * 109.46851 * 179.97438 * 20 18 16 23 23 H 1.48492 * 109.47412 * 300.00257 * 20 18 16 24 24 H 1.08999 * 109.47103 * 59.99197 * 1 2 3 25 25 H 1.08990 * 109.47673 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46665 * 299.99830 * 1 2 3 27 27 H 1.09000 * 109.46665 * 240.00170 * 2 1 3 28 28 H 1.08999 * 109.47103 * 120.00803 * 2 1 3 29 29 H 1.08996 * 109.46688 * 294.99793 * 7 5 3 30 30 H 1.09000 * 109.46987 * 54.99787 * 7 5 3 31 31 H 0.96707 * 113.99862 * 179.97438 * 8 7 5 32 32 H 1.08999 * 110.72414 * 96.40578 * 9 5 3 33 33 H 1.09006 * 110.72752 * 219.50931 * 9 5 3 34 34 H 1.09002 * 110.66772 * 278.97905 * 10 9 5 35 35 H 1.09003 * 110.67092 * 155.85001 * 10 9 5 36 36 H 1.09004 * 109.47040 * 290.00080 * 12 11 3 37 37 H 1.09000 * 109.47033 * 50.00032 * 12 11 3 38 38 H 1.09004 * 109.46862 * 299.99897 * 13 12 11 39 39 H 1.09004 * 109.46998 * 59.99419 * 13 12 11 40 40 H 1.08996 * 109.47261 * 300.00171 * 14 13 12 41 41 H 1.09000 * 109.46870 * 59.99782 * 14 13 12 42 42 H 1.08996 * 109.47407 * 300.00483 * 15 14 13 43 43 H 1.09000 * 109.46986 * 60.00254 * 15 14 13 44 44 H 0.96996 * 119.99725 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6077 1.9920 -0.8360 5 6 3.5765 1.4556 -0.1021 6 1 3.8919 1.9983 -0.9932 7 6 4.1191 0.0253 -0.1304 8 8 5.5320 0.0559 -0.3421 9 6 4.0596 2.1876 1.1710 10 6 2.8161 3.0115 1.5898 11 7 1.6844 2.1026 1.2749 12 6 0.4273 2.8518 1.1469 13 6 -0.0369 3.3095 2.5311 14 6 -1.3458 4.0903 2.3978 15 6 -1.8103 4.5475 3.7821 16 6 -3.0998 5.3160 3.6507 17 1 -3.5440 5.4634 2.6774 18 6 -3.7127 5.8312 4.7733 19 7 -3.1716 5.6522 5.9585 20 14 -5.3109 6.7845 4.6104 21 1 -6.3482 5.9119 4.0040 22 1 -5.7617 7.2281 5.9540 23 1 -5.0936 7.9708 3.7440 24 1 -0.3633 0.5140 -0.8899 25 1 -0.3634 -1.0275 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5140 0.8899 29 1 3.9046 -0.4635 0.8200 30 1 3.6424 -0.5282 -0.9394 31 1 5.9444 -0.8183 -0.3710 32 1 4.3283 1.4726 1.9485 33 1 4.9009 2.8424 0.9437 34 1 2.7473 3.9286 1.0047 35 1 2.8444 3.2356 2.6562 36 1 0.5864 3.7226 0.5108 37 1 -0.3340 2.2110 0.7019 38 1 -0.1960 2.4387 3.1672 39 1 0.7244 3.9502 2.9761 40 1 -1.1863 4.9610 1.7618 41 1 -2.1072 3.4499 1.9526 42 1 -1.9699 3.6766 4.4177 43 1 -1.0490 5.1878 4.2276 44 1 -3.6030 6.0143 6.7482 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000386361050.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:03 Heat of formation + Delta-G solvation = -95.363380 kcal Electronic energy + Delta-G solvation = -19422.221740 eV Core-core repulsion = 16565.442029 eV Total energy + Delta-G solvation = -2856.779711 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.84394 -37.71986 -36.55547 -34.83171 -34.19338 -32.94089 -29.96858 -29.17155 -26.75470 -25.28134 -24.46527 -22.79205 -22.00050 -21.53827 -19.95533 -18.44214 -18.32315 -17.07980 -16.67280 -16.49764 -16.25595 -15.75241 -15.48404 -14.72047 -14.45964 -14.30851 -14.12834 -13.84405 -13.69943 -13.41219 -13.14270 -13.05439 -12.89662 -12.62906 -12.44045 -12.23425 -12.11894 -11.99141 -11.92738 -11.59244 -11.57021 -11.32990 -11.28508 -11.15294 -10.93776 -10.66254 -10.55449 -9.37022 -8.20071 -6.31909 1.38887 1.42561 1.50524 2.40575 2.96316 3.12395 3.25752 3.61753 3.71152 4.05671 4.09212 4.17440 4.23582 4.33125 4.39650 4.45943 4.50016 4.56655 4.59104 4.65628 4.70082 4.75742 4.81549 4.88806 4.90521 5.04263 5.08056 5.14402 5.15965 5.21146 5.25909 5.28240 5.33461 5.41340 5.51162 5.56305 5.76751 5.86203 6.01504 6.14780 6.25483 6.85447 6.95325 7.37368 8.91737 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.042764 B = 0.003379 C = 0.003234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.599988 B = 8283.265974 C = 8656.999569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.107 4.107 3 C 0.071 3.929 4 H 0.053 0.947 5 C -0.094 4.094 6 H 0.078 0.922 7 C 0.087 3.913 8 O -0.595 6.595 9 C -0.105 4.105 10 C 0.029 3.971 11 N -0.518 5.518 12 C 0.051 3.949 13 C -0.099 4.099 14 C -0.096 4.096 15 C 0.025 3.975 16 C -0.546 4.546 17 H 0.060 0.940 18 C -0.003 4.003 19 N -0.935 5.935 20 Si 0.967 3.033 21 H -0.266 1.266 22 H -0.282 1.282 23 H -0.266 1.266 24 H 0.052 0.948 25 H 0.061 0.939 26 H 0.049 0.951 27 H 0.085 0.915 28 H 0.068 0.932 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.396 0.604 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.042 0.958 35 H 0.074 0.926 36 H 0.032 0.968 37 H 0.087 0.913 38 H 0.054 0.946 39 H 0.047 0.953 40 H 0.048 0.952 41 H 0.052 0.948 42 H -0.011 1.011 43 H -0.013 1.013 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.710 -13.016 -15.027 24.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.145 4.145 3 C -0.038 4.038 4 H 0.071 0.929 5 C -0.113 4.113 6 H 0.096 0.904 7 C 0.010 3.990 8 O -0.403 6.403 9 C -0.143 4.143 10 C -0.098 4.098 11 N -0.242 5.242 12 C -0.077 4.077 13 C -0.137 4.137 14 C -0.134 4.134 15 C -0.012 4.012 16 C -0.584 4.584 17 H 0.078 0.922 18 C -0.200 4.200 19 N -0.575 5.575 20 Si 0.791 3.209 21 H -0.190 1.190 22 H -0.207 1.207 23 H -0.191 1.191 24 H 0.071 0.929 25 H 0.080 0.920 26 H 0.068 0.932 27 H 0.104 0.896 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.246 0.754 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.060 0.940 35 H 0.092 0.908 36 H 0.050 0.950 37 H 0.105 0.895 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.071 0.929 42 H 0.007 0.993 43 H 0.006 0.994 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 14.489 -12.728 -14.451 24.099 hybrid contribution -0.721 0.801 -0.062 1.080 sum 13.767 -11.927 -14.513 23.290 Atomic orbital electron populations 1.21913 0.96317 1.01903 1.01456 1.21647 0.95766 0.94508 1.02591 1.22422 0.93817 0.96709 0.90820 0.92871 1.21967 0.93646 0.96749 0.98953 0.90369 1.22389 0.80721 0.95527 1.00387 1.86415 1.21716 1.36157 1.96046 1.22429 0.96331 0.98662 0.96887 1.23285 0.90836 0.94545 1.01167 1.64684 1.01973 1.27445 1.30131 1.22398 0.92437 0.96406 0.96419 1.21402 0.96337 0.99014 0.96910 1.21401 0.96054 0.98458 0.97514 1.18994 0.94638 0.94389 0.93195 1.21721 1.08656 1.34539 0.93522 0.92163 1.26034 1.01666 0.97410 0.94917 1.70102 1.41432 1.47058 0.98906 0.85481 0.79018 0.79030 0.77408 1.19040 1.20742 1.19118 0.92940 0.92004 0.93236 0.89637 0.91294 0.92874 0.91589 0.75388 0.91014 0.90676 0.93989 0.90795 0.94980 0.89484 0.92762 0.93460 0.93362 0.92949 0.99280 0.99448 0.92750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.06 8.80 71.98 0.63 -2.42 16 2 C -0.11 -1.85 4.44 30.60 0.14 -1.71 16 3 C 0.07 1.43 2.61 45.06 0.12 1.55 16 4 H 0.05 1.10 7.77 -2.39 -0.02 1.08 16 5 C -0.09 -1.74 3.26 -9.92 -0.03 -1.77 16 6 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 7 C 0.09 1.28 5.17 71.98 0.37 1.65 16 8 O -0.59 -9.18 13.55 -148.98 -2.02 -11.20 16 9 C -0.11 -2.16 6.50 31.80 0.21 -1.96 16 10 C 0.03 0.72 5.91 86.65 0.51 1.23 16 11 N -0.52 -13.17 4.72 -858.10 -4.05 -17.22 16 12 C 0.05 1.47 4.24 86.30 0.37 1.83 16 13 C -0.10 -3.53 5.30 30.59 0.16 -3.37 16 14 C -0.10 -4.10 5.15 30.59 0.16 -3.94 16 15 C 0.02 1.38 4.97 29.85 0.15 1.52 16 16 C -0.55 -32.18 9.11 25.60 0.23 -31.94 16 17 H 0.06 3.38 7.74 -2.91 -0.02 3.35 16 18 C 0.00 -0.16 5.46 84.66 0.46 0.30 16 19 N -0.93 -58.52 13.29 21.45 0.28 -58.23 16 20 Si 0.97 45.12 29.54 68.60 2.03 47.15 16 21 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 22 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 23 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 24 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 25 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.05 1.18 5.91 -2.39 -0.01 1.17 16 27 H 0.09 1.09 6.41 -2.39 -0.02 1.08 16 28 H 0.07 1.25 7.11 -2.39 -0.02 1.23 16 29 H 0.05 0.79 7.05 -2.39 -0.02 0.77 16 30 H 0.07 0.75 6.30 -2.39 -0.02 0.74 16 31 H 0.40 2.46 9.12 -74.05 -0.68 1.79 16 32 H 0.07 1.51 7.76 -2.39 -0.02 1.49 16 33 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 34 H 0.04 1.04 7.81 -2.39 -0.02 1.02 16 35 H 0.07 1.95 7.80 -2.39 -0.02 1.93 16 36 H 0.03 0.91 7.83 -2.38 -0.02 0.89 16 37 H 0.09 2.38 5.22 -2.39 -0.01 2.37 16 38 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 39 H 0.05 1.74 7.37 -2.39 -0.02 1.72 16 40 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 42 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 43 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 44 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -68.14 336.16 0.00 -68.14 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: 0.28 Total: 10.40 kcal Atomic # 6 Polarization: -42.50 SS G_CDS: 3.48 Total: -39.03 kcal Atomic # 7 Polarization: -71.69 SS G_CDS: -3.76 Total: -75.45 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: -2.02 Total: -11.20 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -68.14 0.00 -68.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386361050.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.224 kcal (2) G-P(sol) polarization free energy of solvation -68.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds