Wall clock time and date at job start Mon Mar 30 2020 07:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53009 * 109.46786 * 2 1 4 4 H 1.08997 * 110.01061 * 303.64625 * 3 2 1 5 5 C 1.54317 * 109.88399 * 64.75760 * 3 2 1 6 6 H 1.08996 * 110.71075 * 23.13572 * 5 3 2 7 7 C 1.52998 * 110.70625 * 260.06957 * 5 3 2 8 8 O 1.42907 * 109.47045 * 175.00434 * 7 5 3 9 9 C 1.55144 * 103.01568 * 141.68729 * 5 3 2 10 10 C 1.54905 * 101.65614 * 324.34462 * 9 5 3 11 11 N 1.47439 * 109.88604 * 182.52634 * 3 2 1 12 12 C 1.46901 * 111.00474 * 3.85435 * 11 3 2 13 13 C 1.53000 * 109.47288 * 175.18436 * 12 11 3 14 14 C 1.52997 * 109.47217 * 179.97438 * 13 12 11 15 15 C 1.52993 * 109.47487 * 180.02562 * 14 13 12 16 16 C 1.50693 * 109.47349 * 180.02562 * 15 14 13 17 17 H 1.08003 * 120.00062 * 359.97438 * 16 15 14 18 18 C 1.37881 * 120.00236 * 180.02562 * 16 15 14 19 19 N 1.31517 * 119.99646 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00241 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46912 * 60.00198 * 20 18 16 22 22 H 1.48503 * 109.46962 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47079 * 300.00071 * 20 18 16 24 24 H 1.09006 * 109.47028 * 173.82942 * 1 2 3 25 25 H 1.08996 * 109.47658 * 293.83049 * 1 2 3 26 26 H 1.09002 * 109.47837 * 53.83641 * 1 2 3 27 27 H 1.09001 * 109.47137 * 240.00716 * 2 1 3 28 28 H 1.08995 * 109.47585 * 119.99953 * 2 1 3 29 29 H 1.08993 * 109.47132 * 294.99989 * 7 5 3 30 30 H 1.08997 * 109.46831 * 55.00453 * 7 5 3 31 31 H 0.96697 * 113.99864 * 179.97438 * 8 7 5 32 32 H 1.09000 * 110.98941 * 82.44354 * 9 5 3 33 33 H 1.09005 * 110.98996 * 206.25365 * 9 5 3 34 34 H 1.08995 * 110.37576 * 278.23988 * 10 9 5 35 35 H 1.09002 * 110.37519 * 155.89310 * 10 9 5 36 36 H 1.09006 * 109.46737 * 55.18823 * 12 11 3 37 37 H 1.08999 * 109.47106 * 295.19053 * 12 11 3 38 38 H 1.09006 * 109.46916 * 60.00496 * 13 12 11 39 39 H 1.08993 * 109.47127 * 300.00376 * 13 12 11 40 40 H 1.09002 * 109.47035 * 60.00344 * 14 13 12 41 41 H 1.08999 * 109.47332 * 300.00712 * 14 13 12 42 42 H 1.09007 * 109.46789 * 300.00559 * 15 14 13 43 43 H 1.09002 * 109.47029 * 59.99940 * 15 14 13 44 44 H 0.97001 * 119.99838 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6292 1.9834 -0.8526 5 6 1.6313 2.1437 1.3126 6 1 1.4489 1.4122 2.0997 7 6 0.3970 3.0213 1.0956 8 8 -0.0271 3.5647 2.3475 9 6 2.8719 3.0142 1.6446 10 6 4.0299 2.1061 1.1609 11 7 3.5130 1.4538 -0.0611 12 6 4.0448 0.0911 -0.1956 13 6 5.5629 0.1515 -0.3761 14 6 6.1168 -1.2678 -0.5155 15 6 7.6350 -1.2075 -0.6954 16 6 8.1805 -2.6054 -0.8333 17 1 7.5113 -3.4523 -0.7959 18 6 9.5340 -2.8034 -1.0062 19 7 10.3489 -1.7721 -1.0512 20 14 10.2103 -4.5363 -1.1764 21 1 9.5977 -5.1927 -2.3594 22 1 11.6838 -4.4777 -1.3512 23 1 9.8868 -5.3162 0.0452 24 1 -0.3633 -1.0218 -0.1105 25 1 -0.3634 0.4152 0.9400 26 1 -0.3635 0.6064 -0.8296 27 1 1.8933 -0.5137 -0.8901 28 1 1.8933 -0.5138 0.8899 29 1 0.6443 3.8336 0.4122 30 1 -0.4061 2.4199 0.6698 31 1 -0.8068 4.1333 2.2855 32 1 2.8517 3.9511 1.0879 33 1 2.9430 3.2001 2.7163 34 1 4.2680 1.3591 1.9180 35 1 4.9101 2.7053 0.9277 36 1 3.5945 -0.3906 -1.0636 37 1 3.8080 -0.4815 0.7012 38 1 6.0131 0.6332 0.4919 39 1 5.7996 0.7240 -1.2729 40 1 5.6667 -1.7499 -1.3833 41 1 5.8801 -1.8400 0.3815 42 1 7.8720 -0.6351 -1.5923 43 1 8.0848 -0.7255 0.1726 44 1 11.3011 -1.9113 -1.1732 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000386361052.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:06 Heat of formation + Delta-G solvation = -97.120616 kcal Electronic energy + Delta-G solvation = -19390.133279 eV Core-core repulsion = 16533.277368 eV Total energy + Delta-G solvation = -2856.855911 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.99955 -37.75315 -36.55849 -34.80747 -34.23782 -32.91687 -29.90556 -29.19972 -26.77023 -25.70962 -23.82914 -23.20521 -22.02998 -21.36227 -20.21728 -18.41995 -18.10661 -16.92873 -16.88826 -16.50444 -16.42297 -15.73514 -15.41537 -14.94462 -14.61095 -14.39972 -13.98766 -13.91127 -13.83957 -13.35774 -12.98548 -12.95909 -12.73674 -12.63811 -12.47358 -12.23835 -12.18172 -12.05847 -11.93602 -11.74268 -11.62141 -11.46651 -11.32331 -11.18995 -10.98468 -10.73676 -10.55462 -9.22682 -8.20091 -6.31966 1.38904 1.42671 1.50629 2.40626 2.96403 3.12366 3.20395 3.60309 3.72681 4.00429 4.08856 4.13962 4.16843 4.27814 4.39509 4.41748 4.47670 4.53179 4.56567 4.61588 4.65802 4.74259 4.81753 4.87039 4.90155 4.93329 5.06230 5.06597 5.16583 5.20341 5.27164 5.28979 5.33060 5.35499 5.44580 5.54287 5.76707 5.86000 6.06666 6.14522 6.25465 6.85368 6.93438 7.37323 8.91755 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.041948 B = 0.003358 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 667.338555 B = 8337.033765 C = 8795.291993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.142 4.142 3 C 0.081 3.919 4 H 0.093 0.907 5 C -0.101 4.101 6 H 0.072 0.928 7 C 0.088 3.912 8 O -0.593 6.593 9 C -0.113 4.113 10 C 0.037 3.963 11 N -0.535 5.535 12 C 0.061 3.939 13 C -0.104 4.104 14 C -0.095 4.095 15 C 0.024 3.976 16 C -0.546 4.546 17 H 0.060 0.940 18 C -0.003 4.003 19 N -0.935 5.935 20 Si 0.967 3.033 21 H -0.265 1.265 22 H -0.282 1.282 23 H -0.266 1.266 24 H 0.059 0.941 25 H 0.058 0.942 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.397 0.603 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.038 0.962 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.036 0.964 38 H 0.047 0.953 39 H 0.054 0.946 40 H 0.053 0.947 41 H 0.048 0.952 42 H -0.011 1.011 43 H -0.013 1.013 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.772 9.231 3.875 25.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.181 4.181 3 C -0.026 4.026 4 H 0.111 0.889 5 C -0.120 4.120 6 H 0.090 0.910 7 C 0.010 3.990 8 O -0.401 6.401 9 C -0.151 4.151 10 C -0.091 4.091 11 N -0.259 5.259 12 C -0.067 4.067 13 C -0.142 4.142 14 C -0.134 4.134 15 C -0.013 4.013 16 C -0.584 4.584 17 H 0.079 0.921 18 C -0.201 4.201 19 N -0.575 5.575 20 Si 0.791 3.209 21 H -0.190 1.190 22 H -0.207 1.207 23 H -0.191 1.191 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.247 0.753 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.057 0.943 35 H 0.091 0.909 36 H 0.102 0.898 37 H 0.054 0.946 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.007 0.993 43 H 0.005 0.995 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -22.920 9.218 3.622 24.968 hybrid contribution 0.354 -0.866 0.417 1.024 sum -22.565 8.352 4.038 24.398 Atomic orbital electron populations 1.21784 0.93994 1.02370 1.02274 1.22132 0.97673 0.96143 1.02117 1.22483 0.86894 0.95959 0.97305 0.88936 1.22386 0.94923 0.97329 0.97392 0.90995 1.22210 0.95309 0.96068 0.85370 1.86436 1.52162 1.69532 1.31987 1.22675 0.92971 0.98126 1.01372 1.23086 0.98641 0.96976 0.90349 1.63740 1.06488 1.18119 1.37528 1.22288 0.94197 0.89367 1.00814 1.21499 0.94957 0.96693 1.01097 1.21391 0.95816 0.95867 1.00286 1.19000 0.92417 0.95396 0.94454 1.21720 0.93096 0.93973 1.49631 0.92133 1.26041 0.97589 1.01631 0.94799 1.70106 1.04005 1.32328 1.51087 0.85477 0.77049 0.79152 0.79228 1.19023 1.20745 1.19102 0.92216 0.92322 0.91521 0.91169 0.92731 0.92660 0.91751 0.75340 0.90325 0.90693 0.94345 0.90861 0.89842 0.94617 0.93448 0.92757 0.92859 0.93346 0.99292 0.99468 0.92750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 8.70 71.98 0.63 -1.44 16 2 C -0.14 -2.69 4.08 30.60 0.12 -2.57 16 3 C 0.08 1.65 3.10 45.26 0.14 1.79 16 4 H 0.09 1.74 7.82 -2.39 -0.02 1.72 16 5 C -0.10 -1.89 2.07 -9.61 -0.02 -1.91 16 6 H 0.07 1.51 7.77 -2.39 -0.02 1.50 16 7 C 0.09 1.24 6.14 71.98 0.44 1.69 16 8 O -0.59 -8.97 13.60 -148.98 -2.03 -11.00 16 9 C -0.11 -2.35 6.47 31.98 0.21 -2.14 16 10 C 0.04 0.94 5.53 86.77 0.48 1.42 16 11 N -0.54 -13.94 5.20 -860.52 -4.48 -18.42 16 12 C 0.06 1.76 3.67 86.30 0.32 2.08 16 13 C -0.10 -3.78 5.18 30.59 0.16 -3.62 16 14 C -0.10 -4.09 5.15 30.59 0.16 -3.93 16 15 C 0.02 1.35 4.97 29.84 0.15 1.50 16 16 C -0.55 -32.23 9.11 25.60 0.23 -32.00 16 17 H 0.06 3.40 7.74 -2.91 -0.02 3.38 16 18 C 0.00 -0.18 5.46 84.66 0.46 0.28 16 19 N -0.94 -58.66 13.29 21.45 0.28 -58.37 16 20 Si 0.97 45.19 29.54 68.60 2.03 47.22 16 21 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 22 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 23 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 24 H 0.06 0.80 8.14 -2.38 -0.02 0.79 16 25 H 0.06 0.80 6.61 -2.39 -0.02 0.78 16 26 H 0.07 0.79 8.13 -2.39 -0.02 0.77 16 27 H 0.07 1.41 6.29 -2.39 -0.02 1.40 16 28 H 0.05 1.15 6.95 -2.39 -0.02 1.14 16 29 H 0.06 0.70 8.00 -2.39 -0.02 0.68 16 30 H 0.06 0.72 6.20 -2.39 -0.01 0.70 16 31 H 0.40 2.25 9.12 -74.06 -0.68 1.58 16 32 H 0.08 1.54 7.94 -2.39 -0.02 1.52 16 33 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 34 H 0.04 1.04 7.71 -2.39 -0.02 1.02 16 35 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.08 2.29 6.33 -2.38 -0.02 2.27 16 37 H 0.04 1.02 6.75 -2.39 -0.02 1.01 16 38 H 0.05 1.76 7.31 -2.38 -0.02 1.74 16 39 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 42 H -0.01 -0.68 8.14 -2.38 -0.02 -0.70 16 43 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 44 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -68.58 336.69 -0.44 -69.03 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: 0.27 Total: 10.40 kcal Atomic # 6 Polarization: -42.34 SS G_CDS: 3.48 Total: -38.86 kcal Atomic # 7 Polarization: -72.60 SS G_CDS: -4.19 Total: -76.79 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: -2.03 Total: -11.00 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -68.58 -0.44 -69.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386361052.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.094 kcal (2) G-P(sol) polarization free energy of solvation -68.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds