Wall clock time and date at job start Mon Mar 30 2020 06:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52993 * 109.47537 * 2 1 4 4 O 1.42900 * 109.46809 * 239.99751 * 2 1 3 5 5 C 1.53004 * 109.47009 * 120.00377 * 2 1 3 6 6 C 1.52995 * 109.46908 * 299.99475 * 5 2 1 7 7 C 1.53007 * 109.47214 * 179.97438 * 5 2 1 8 8 C 1.52993 * 109.47279 * 59.99465 * 5 2 1 9 9 N 1.46900 * 109.47178 * 177.79597 * 8 5 2 10 10 C 1.46910 * 111.00074 * 185.53616 * 9 8 5 11 11 C 1.52997 * 109.47018 * 183.29558 * 10 9 8 12 12 C 1.50698 * 115.55415 * 306.84436 * 11 10 9 13 13 H 1.07994 * 120.00164 * 143.56670 * 12 11 10 14 14 C 1.37881 * 119.99615 * 323.57307 * 12 11 10 15 15 N 1.31511 * 120.00105 * 350.97535 * 14 12 11 16 16 Si 1.86798 * 119.99918 * 170.97804 * 14 12 11 17 17 H 1.48500 * 109.47265 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47109 * 119.99401 * 16 14 12 19 19 H 1.48499 * 109.47306 * 239.99574 * 16 14 12 20 20 C 1.53003 * 117.49796 * 161.16985 * 11 10 9 21 21 C 1.53005 * 117.49497 * 92.51374 * 11 10 9 22 22 H 1.09009 * 109.47177 * 300.00358 * 1 2 3 23 23 H 1.09004 * 109.47092 * 59.99552 * 1 2 3 24 24 H 1.08995 * 109.47638 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47545 * 179.97438 * 3 2 1 26 26 H 1.09004 * 109.47295 * 300.00324 * 3 2 1 27 27 H 1.09004 * 109.47159 * 60.00379 * 3 2 1 28 28 H 0.96708 * 113.99910 * 180.02562 * 4 2 1 29 29 H 1.09003 * 109.47357 * 182.88112 * 6 5 2 30 30 H 1.09007 * 109.47552 * 302.88558 * 6 5 2 31 31 H 1.09005 * 109.47414 * 62.88831 * 6 5 2 32 32 H 1.09002 * 109.46783 * 301.02924 * 7 5 2 33 33 H 1.08998 * 109.47129 * 61.02729 * 7 5 2 34 34 H 1.08994 * 109.46890 * 181.03389 * 7 5 2 35 35 H 1.08995 * 109.47658 * 297.79647 * 8 5 2 36 36 H 1.08998 * 109.47251 * 57.79621 * 8 5 2 37 37 H 1.00898 * 111.00257 * 61.57946 * 9 8 5 38 38 H 1.08996 * 109.46375 * 303.29627 * 10 9 8 39 39 H 1.08998 * 109.47046 * 63.29798 * 10 9 8 40 40 H 0.96998 * 120.00232 * 185.03514 * 15 14 12 41 41 H 1.09001 * 117.49552 * 0.02562 * 20 11 10 42 42 H 1.08999 * 117.49718 * 145.02253 * 20 11 10 43 43 H 1.09004 * 117.49719 * 214.97998 * 21 11 10 44 44 H 1.08998 * 117.50148 * 359.97311 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0062 -0.6737 -1.1668 5 6 2.0399 -0.7214 1.2492 6 6 1.5300 -0.0001 2.4984 7 6 3.5700 -0.7219 1.2490 8 6 1.5298 -2.1638 1.2492 9 7 2.0625 -2.8715 2.4211 10 6 1.7012 -4.2950 2.3856 11 6 2.2014 -4.9801 3.6589 12 6 3.6639 -4.7894 3.9681 13 1 3.9901 -4.6840 4.9922 14 6 4.5856 -4.7493 2.9434 15 7 4.2193 -5.0527 1.7173 16 14 6.3545 -4.2640 3.2967 17 1 6.5079 -3.9719 4.7445 18 1 7.2588 -5.3793 2.9178 19 1 6.7029 -3.0546 2.5085 20 6 1.5691 -6.3218 4.0343 21 6 1.2345 -5.0651 4.8417 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 3.1300 1.4424 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6768 1.9563 0.8900 28 1 2.9703 -0.7122 -1.2327 29 1 1.9349 -0.4833 3.3877 30 1 1.8506 1.0415 2.4730 31 1 0.4412 -0.0446 2.5248 32 1 3.9329 -1.2199 0.3498 33 1 3.9337 0.3054 1.2672 34 1 3.9332 -1.2518 2.1295 35 1 0.4406 -2.1640 1.2888 36 1 1.8605 -2.6661 0.3402 37 1 1.7488 -2.4401 3.2776 38 1 0.6176 -4.3932 2.3218 39 1 2.1605 -4.7648 1.5159 40 1 4.8816 -5.0957 1.0098 41 1 0.7971 -6.7166 3.3738 42 1 2.2109 -7.0664 4.5051 43 1 1.6564 -4.9835 5.8435 44 1 0.2423 -4.6327 4.7128 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393579569.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:11 Heat of formation + Delta-G solvation = -33.461070 kcal Electronic energy + Delta-G solvation = -20834.533339 eV Core-core repulsion = 17980.437913 eV Total energy + Delta-G solvation = -2854.095426 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.52375 -36.86431 -34.95484 -32.74989 -31.91551 -30.45357 -27.98895 -26.65699 -25.74235 -25.00301 -23.28710 -21.38879 -20.95330 -18.91533 -18.37612 -16.63470 -15.87301 -15.10094 -14.75576 -14.64818 -14.47253 -14.02754 -13.62591 -13.12369 -12.94112 -12.65399 -12.55923 -12.05103 -11.99905 -11.75673 -11.61667 -11.47423 -11.28783 -11.19754 -10.91747 -10.86387 -10.75387 -10.50832 -10.38618 -10.23534 -10.05010 -9.87542 -9.51778 -9.08477 -8.87658 -8.57959 -7.91961 -7.09291 -5.81489 -3.85559 3.36326 3.44931 3.48526 4.39955 4.52155 4.84037 4.95083 5.05257 5.16780 5.34983 5.40194 5.54257 5.62909 5.69842 5.70918 5.84285 5.97271 5.99452 6.05284 6.08852 6.16068 6.17918 6.23026 6.32481 6.38324 6.47467 6.48276 6.61130 6.68108 6.73252 6.78332 6.91537 7.00901 7.03986 7.24112 7.39567 7.73911 7.88187 8.13317 8.33445 8.49988 8.72553 9.08240 9.74501 11.19600 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.020434 B = 0.007360 C = 0.006190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.948405 B = 3803.614310 C = 4522.184607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.136 3.864 3 C -0.180 4.180 4 O -0.560 6.560 5 C -0.080 4.080 6 C -0.145 4.145 7 C -0.135 4.135 8 C 0.078 3.922 9 N -0.649 5.649 10 C 0.109 3.891 11 C 0.063 3.937 12 C -0.480 4.480 13 H 0.053 0.947 14 C 0.093 3.907 15 N -0.867 5.867 16 Si 0.886 3.114 17 H -0.277 1.277 18 H -0.290 1.290 19 H -0.283 1.283 20 C -0.206 4.206 21 C -0.221 4.221 22 H 0.068 0.932 23 H 0.055 0.945 24 H 0.065 0.935 25 H 0.061 0.939 26 H 0.056 0.944 27 H 0.066 0.934 28 H 0.374 0.626 29 H 0.066 0.934 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.048 0.952 33 H 0.039 0.961 34 H 0.082 0.918 35 H 0.009 0.991 36 H 0.072 0.928 37 H 0.321 0.679 38 H -0.024 1.024 39 H 0.111 0.889 40 H 0.255 0.745 41 H 0.061 0.939 42 H 0.076 0.924 43 H 0.072 0.928 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.889 10.898 -3.006 12.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.095 3.905 3 C -0.237 4.237 4 O -0.367 6.367 5 C -0.081 4.081 6 C -0.203 4.203 7 C -0.192 4.192 8 C -0.051 4.051 9 N -0.278 5.278 10 C -0.019 4.019 11 C 0.062 3.938 12 C -0.517 4.517 13 H 0.071 0.929 14 C -0.111 4.111 15 N -0.504 5.504 16 Si 0.715 3.285 17 H -0.202 1.202 18 H -0.217 1.217 19 H -0.209 1.209 20 C -0.245 4.245 21 C -0.258 4.258 22 H 0.087 0.913 23 H 0.074 0.926 24 H 0.084 0.916 25 H 0.080 0.920 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.223 0.777 29 H 0.085 0.915 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.058 0.942 34 H 0.101 0.899 35 H 0.027 0.973 36 H 0.090 0.910 37 H 0.138 0.862 38 H -0.007 1.007 39 H 0.129 0.871 40 H 0.066 0.934 41 H 0.079 0.921 42 H 0.094 0.906 43 H 0.091 0.909 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.838 10.780 -3.612 12.356 hybrid contribution 0.525 0.264 0.595 0.836 sum -4.314 11.044 -3.017 12.234 Atomic orbital electron populations 1.21836 0.93439 1.02899 1.01644 1.21141 0.94240 0.90126 0.84958 1.22575 1.01809 0.97189 1.02120 1.86499 1.26801 1.79679 1.43706 1.21100 0.96867 0.95860 0.94261 1.21985 1.00355 0.99766 0.98165 1.21784 0.93737 0.99751 1.03924 1.21828 0.94584 0.92425 0.96304 1.60193 1.62633 1.02642 1.02321 1.21558 0.91750 0.87250 1.01355 1.19028 0.92663 0.92501 0.89605 1.20284 0.89045 1.50025 0.92395 0.92928 1.24712 0.97818 0.93854 0.94717 1.69810 1.32795 1.47100 1.00651 0.86658 0.85433 0.78197 0.78193 1.20172 1.21673 1.20910 1.22936 1.03888 0.92961 1.04727 1.22933 0.99983 1.04981 0.97899 0.91281 0.92633 0.91597 0.92046 0.92520 0.91519 0.77745 0.91508 0.92910 0.93089 0.93256 0.94202 0.89863 0.97288 0.90976 0.86208 1.00653 0.87117 0.93450 0.92078 0.90553 0.90921 0.92054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 8.14 37.15 0.30 -1.47 16 2 C 0.14 1.81 0.61 -90.62 -0.06 1.75 16 3 C -0.18 -2.01 8.11 37.15 0.30 -1.71 16 4 O -0.56 -8.21 12.22 -35.23 -0.43 -8.64 16 5 C -0.08 -1.18 0.23 -154.51 -0.04 -1.22 16 6 C -0.15 -1.95 7.40 37.16 0.27 -1.67 16 7 C -0.13 -2.15 7.65 37.16 0.28 -1.86 16 8 C 0.08 1.41 4.10 -3.83 -0.02 1.40 16 9 N -0.65 -13.47 5.12 -113.78 -0.58 -14.05 16 10 C 0.11 2.55 4.76 -3.82 -0.02 2.53 16 11 C 0.06 1.54 1.99 -155.66 -0.31 1.23 16 12 C -0.48 -12.92 8.70 -34.44 -0.30 -13.22 16 13 H 0.05 1.45 7.83 -52.49 -0.41 1.04 16 14 C 0.09 2.48 5.18 -17.82 -0.09 2.39 16 15 N -0.87 -23.55 10.77 55.43 0.60 -22.95 16 16 Si 0.89 21.11 29.55 -169.99 -5.02 16.09 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 20 C -0.21 -4.79 9.96 -26.69 -0.27 -5.05 16 21 C -0.22 -4.86 9.92 -26.69 -0.26 -5.12 16 22 H 0.07 0.76 6.50 -51.92 -0.34 0.43 16 23 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.07 0.91 6.48 -51.93 -0.34 0.57 16 25 H 0.06 0.67 6.45 -51.93 -0.34 0.34 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.07 0.69 6.37 -51.93 -0.33 0.36 16 28 H 0.37 4.75 7.31 45.56 0.33 5.08 16 29 H 0.07 0.98 6.89 -51.93 -0.36 0.62 16 30 H 0.05 0.62 6.28 -51.93 -0.33 0.29 16 31 H 0.05 0.64 6.59 -51.93 -0.34 0.29 16 32 H 0.05 0.80 6.73 -51.93 -0.35 0.45 16 33 H 0.04 0.54 6.48 -51.93 -0.34 0.20 16 34 H 0.08 1.60 7.51 -51.93 -0.39 1.21 16 35 H 0.01 0.16 6.55 -51.93 -0.34 -0.18 16 36 H 0.07 1.46 7.60 -51.93 -0.39 1.07 16 37 H 0.32 6.47 7.11 -39.29 -0.28 6.19 16 38 H -0.02 -0.55 8.08 -51.93 -0.42 -0.97 16 39 H 0.11 2.91 6.06 -51.93 -0.31 2.59 16 40 H 0.26 6.74 8.32 -40.82 -0.34 6.40 16 41 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 42 H 0.08 1.79 8.14 -51.93 -0.42 1.37 16 43 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 44 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 329.71 15.07 4.97 4.97 Total: -1.00 -27.42 329.71 -7.60 -35.02 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: -6.94 Total: 11.59 kcal Atomic # 6 Polarization: -21.83 SS G_CDS: -0.19 Total: -22.03 kcal Atomic # 7 Polarization: -37.01 SS G_CDS: 0.01 Total: -37.00 kcal Atomic # 8 Polarization: -8.21 SS G_CDS: -0.43 Total: -8.64 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -27.42 -7.60 -35.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393579569.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.558 kcal (2) G-P(sol) polarization free energy of solvation -27.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds