Wall clock time and date at job start Mon Mar 30 2020 06:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52993 * 109.47537 * 2 1 4 4 O 1.42900 * 109.46809 * 239.99751 * 2 1 3 5 5 C 1.53004 * 109.47009 * 120.00377 * 2 1 3 6 6 C 1.52995 * 109.46908 * 299.99475 * 5 2 1 7 7 C 1.53007 * 109.47214 * 179.97438 * 5 2 1 8 8 C 1.52993 * 109.47279 * 59.99465 * 5 2 1 9 9 N 1.46900 * 109.47178 * 177.79597 * 8 5 2 10 10 C 1.46910 * 111.00074 * 185.53616 * 9 8 5 11 11 C 1.52997 * 109.47018 * 183.29558 * 10 9 8 12 12 C 1.50698 * 115.55415 * 306.84436 * 11 10 9 13 13 H 1.07994 * 120.00164 * 143.56670 * 12 11 10 14 14 C 1.37881 * 119.99615 * 323.57307 * 12 11 10 15 15 N 1.31511 * 120.00105 * 350.97535 * 14 12 11 16 16 Si 1.86798 * 119.99918 * 170.97804 * 14 12 11 17 17 H 1.48500 * 109.47265 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47109 * 119.99401 * 16 14 12 19 19 H 1.48499 * 109.47306 * 239.99574 * 16 14 12 20 20 C 1.53003 * 117.49796 * 161.16985 * 11 10 9 21 21 C 1.53005 * 117.49497 * 92.51374 * 11 10 9 22 22 H 1.09009 * 109.47177 * 300.00358 * 1 2 3 23 23 H 1.09004 * 109.47092 * 59.99552 * 1 2 3 24 24 H 1.08995 * 109.47638 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47545 * 179.97438 * 3 2 1 26 26 H 1.09004 * 109.47295 * 300.00324 * 3 2 1 27 27 H 1.09004 * 109.47159 * 60.00379 * 3 2 1 28 28 H 0.96708 * 113.99910 * 180.02562 * 4 2 1 29 29 H 1.09003 * 109.47357 * 182.88112 * 6 5 2 30 30 H 1.09007 * 109.47552 * 302.88558 * 6 5 2 31 31 H 1.09005 * 109.47414 * 62.88831 * 6 5 2 32 32 H 1.09002 * 109.46783 * 301.02924 * 7 5 2 33 33 H 1.08998 * 109.47129 * 61.02729 * 7 5 2 34 34 H 1.08994 * 109.46890 * 181.03389 * 7 5 2 35 35 H 1.08995 * 109.47658 * 297.79647 * 8 5 2 36 36 H 1.08998 * 109.47251 * 57.79621 * 8 5 2 37 37 H 1.00898 * 111.00257 * 61.57946 * 9 8 5 38 38 H 1.08996 * 109.46375 * 303.29627 * 10 9 8 39 39 H 1.08998 * 109.47046 * 63.29798 * 10 9 8 40 40 H 0.96998 * 120.00232 * 185.03514 * 15 14 12 41 41 H 1.09001 * 117.49552 * 0.02562 * 20 11 10 42 42 H 1.08999 * 117.49718 * 145.02253 * 20 11 10 43 43 H 1.09004 * 117.49719 * 214.97998 * 21 11 10 44 44 H 1.08998 * 117.50148 * 359.97311 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0062 -0.6737 -1.1668 5 6 2.0399 -0.7214 1.2492 6 6 1.5300 -0.0001 2.4984 7 6 3.5700 -0.7219 1.2490 8 6 1.5298 -2.1638 1.2492 9 7 2.0625 -2.8715 2.4211 10 6 1.7012 -4.2950 2.3856 11 6 2.2014 -4.9801 3.6589 12 6 3.6639 -4.7894 3.9681 13 1 3.9901 -4.6840 4.9922 14 6 4.5856 -4.7493 2.9434 15 7 4.2193 -5.0527 1.7173 16 14 6.3545 -4.2640 3.2967 17 1 6.5079 -3.9719 4.7445 18 1 7.2588 -5.3793 2.9178 19 1 6.7029 -3.0546 2.5085 20 6 1.5691 -6.3218 4.0343 21 6 1.2345 -5.0651 4.8417 22 1 -0.3634 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 3.1300 1.4424 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6768 1.9563 0.8900 28 1 2.9703 -0.7122 -1.2327 29 1 1.9349 -0.4833 3.3877 30 1 1.8506 1.0415 2.4730 31 1 0.4412 -0.0446 2.5248 32 1 3.9329 -1.2199 0.3498 33 1 3.9337 0.3054 1.2672 34 1 3.9332 -1.2518 2.1295 35 1 0.4406 -2.1640 1.2888 36 1 1.8605 -2.6661 0.3402 37 1 1.7488 -2.4401 3.2776 38 1 0.6176 -4.3932 2.3218 39 1 2.1605 -4.7648 1.5159 40 1 4.8816 -5.0957 1.0098 41 1 0.7971 -6.7166 3.3738 42 1 2.2109 -7.0664 4.5051 43 1 1.6564 -4.9835 5.8435 44 1 0.2423 -4.6327 4.7128 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000393579569.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:11 Heat of formation + Delta-G solvation = -50.520831 kcal Electronic energy + Delta-G solvation = -20835.273106 eV Core-core repulsion = 17980.437913 eV Total energy + Delta-G solvation = -2854.835192 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.69397 -38.66365 -36.31486 -34.17435 -33.92673 -31.62358 -29.09156 -27.87249 -27.49326 -26.67436 -24.78842 -22.96683 -22.45361 -20.83409 -19.55746 -18.28566 -17.34862 -16.67529 -16.33750 -16.07969 -15.74469 -15.38652 -15.28480 -14.69757 -14.41388 -14.10779 -13.69675 -13.47847 -13.15976 -13.10126 -13.02399 -12.82249 -12.75637 -12.67086 -12.53083 -12.39665 -12.25575 -12.03811 -11.99058 -11.88461 -11.49851 -11.19617 -11.06839 -10.86554 -10.56226 -10.38754 -9.88205 -8.75091 -7.84846 -5.95333 1.44342 1.49182 1.56800 2.53205 3.16430 3.36136 3.60907 3.76712 3.85084 3.96222 4.09645 4.23454 4.37043 4.40155 4.47319 4.57643 4.75324 4.77013 4.81053 4.87980 4.91495 4.94117 4.96602 5.00621 5.02767 5.09123 5.11772 5.15375 5.16645 5.22744 5.24636 5.39706 5.44548 5.56036 5.64300 5.69842 5.74133 6.11939 6.50345 6.65243 6.86288 7.01014 7.03860 7.66451 9.13204 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.020434 B = 0.007360 C = 0.006190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.948405 B = 3803.614310 C = 4522.184607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.135 3.865 3 C -0.174 4.174 4 O -0.578 6.578 5 C -0.073 4.073 6 C -0.142 4.142 7 C -0.129 4.129 8 C 0.085 3.915 9 N -0.655 5.655 10 C 0.122 3.878 11 C 0.033 3.967 12 C -0.495 4.495 13 H 0.040 0.960 14 C 0.059 3.941 15 N -0.884 5.884 16 Si 0.937 3.063 17 H -0.276 1.276 18 H -0.290 1.290 19 H -0.281 1.281 20 C -0.210 4.210 21 C -0.196 4.196 22 H 0.087 0.913 23 H 0.063 0.937 24 H 0.046 0.954 25 H 0.063 0.937 26 H 0.064 0.936 27 H 0.081 0.919 28 H 0.380 0.620 29 H 0.050 0.950 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.038 0.962 33 H 0.066 0.934 34 H 0.047 0.953 35 H 0.015 0.985 36 H 0.042 0.958 37 H 0.325 0.675 38 H -0.020 1.020 39 H 0.078 0.922 40 H 0.253 0.747 41 H 0.071 0.929 42 H 0.068 0.932 43 H 0.075 0.925 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.461 12.842 -2.658 14.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.094 3.906 3 C -0.231 4.231 4 O -0.386 6.386 5 C -0.074 4.074 6 C -0.199 4.199 7 C -0.187 4.187 8 C -0.044 4.044 9 N -0.284 5.284 10 C -0.007 4.007 11 C 0.032 3.968 12 C -0.533 4.533 13 H 0.058 0.942 14 C -0.144 4.144 15 N -0.521 5.521 16 Si 0.765 3.235 17 H -0.201 1.201 18 H -0.216 1.216 19 H -0.207 1.207 20 C -0.248 4.248 21 C -0.233 4.233 22 H 0.106 0.894 23 H 0.082 0.918 24 H 0.066 0.934 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.099 0.901 28 H 0.229 0.771 29 H 0.069 0.931 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.057 0.943 33 H 0.085 0.915 34 H 0.066 0.934 35 H 0.033 0.967 36 H 0.061 0.939 37 H 0.143 0.857 38 H -0.002 1.002 39 H 0.096 0.904 40 H 0.063 0.937 41 H 0.090 0.910 42 H 0.086 0.914 43 H 0.093 0.907 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.412 12.728 -3.255 14.208 hybrid contribution 0.682 -0.379 0.486 0.919 sum -4.730 12.349 -2.769 13.510 Atomic orbital electron populations 1.21873 0.92827 1.02116 1.03048 1.21245 0.94746 0.91128 0.83446 1.22519 1.01963 0.95366 1.03271 1.86486 1.27494 1.80202 1.44378 1.21047 0.96003 0.94029 0.96284 1.21959 1.01008 1.00645 0.96324 1.21706 0.94636 1.00688 1.01626 1.21774 0.94780 0.94002 0.93852 1.60100 1.63253 1.01667 1.03406 1.21244 0.91452 0.88518 0.99459 1.19138 0.92343 0.93904 0.91376 1.20427 0.90624 1.50396 0.91814 0.94221 1.25217 1.00628 0.93883 0.94630 1.69948 1.33414 1.47680 1.01043 0.85867 0.82004 0.77789 0.77868 1.20133 1.21613 1.20668 1.22929 1.03944 0.92764 1.05177 1.22911 1.00132 1.03315 0.96985 0.89392 0.91759 0.93447 0.91791 0.91696 0.90054 0.77081 0.93067 0.90586 0.91935 0.94335 0.91547 0.93360 0.96713 0.93943 0.85682 1.00196 0.90363 0.93734 0.91020 0.91363 0.90652 0.89933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 8.14 71.98 0.59 -2.66 16 2 C 0.13 3.32 0.61 -10.80 -0.01 3.31 16 3 C -0.17 -3.32 8.11 71.98 0.58 -2.74 16 4 O -0.58 -16.49 12.22 -148.98 -1.82 -18.31 16 5 C -0.07 -2.06 0.23 -52.18 -0.01 -2.07 16 6 C -0.14 -3.45 7.40 71.98 0.53 -2.92 16 7 C -0.13 -4.02 7.65 71.98 0.55 -3.47 16 8 C 0.09 3.08 4.10 86.30 0.35 3.43 16 9 N -0.65 -27.36 5.12 -513.90 -2.63 -29.99 16 10 C 0.12 5.78 4.76 86.30 0.41 6.19 16 11 C 0.03 1.63 1.99 -52.93 -0.11 1.52 16 12 C -0.50 -26.87 8.70 25.60 0.22 -26.65 16 13 H 0.04 2.20 7.83 -2.91 -0.02 2.18 16 14 C 0.06 3.15 5.18 84.66 0.44 3.59 16 15 N -0.88 -48.96 10.77 21.45 0.23 -48.73 16 16 Si 0.94 43.72 29.55 68.60 2.03 45.74 16 17 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 18 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 19 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 20 C -0.21 -9.61 9.96 30.62 0.30 -9.30 16 21 C -0.20 -8.36 9.92 30.62 0.30 -8.06 16 22 H 0.09 1.66 6.50 -2.38 -0.02 1.64 16 23 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 24 H 0.05 1.25 6.48 -2.39 -0.02 1.23 16 25 H 0.06 1.19 6.45 -2.39 -0.02 1.18 16 26 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 27 H 0.08 1.33 6.37 -2.39 -0.02 1.31 16 28 H 0.38 9.49 7.31 -74.05 -0.54 8.95 16 29 H 0.05 1.41 6.89 -2.39 -0.02 1.40 16 30 H 0.08 1.50 6.28 -2.38 -0.01 1.49 16 31 H 0.06 1.37 6.59 -2.38 -0.02 1.36 16 32 H 0.04 1.25 6.73 -2.39 -0.02 1.23 16 33 H 0.07 1.68 6.48 -2.39 -0.02 1.66 16 34 H 0.05 1.84 7.51 -2.39 -0.02 1.83 16 35 H 0.01 0.52 6.55 -2.39 -0.02 0.50 16 36 H 0.04 1.77 7.60 -2.39 -0.02 1.75 16 37 H 0.33 13.02 7.11 -89.70 -0.64 12.38 16 38 H -0.02 -0.89 8.08 -2.39 -0.02 -0.91 16 39 H 0.08 4.24 6.06 -2.39 -0.01 4.22 16 40 H 0.25 13.63 8.32 -92.71 -0.77 12.86 16 41 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 42 H 0.07 3.19 8.14 -2.39 -0.02 3.17 16 43 H 0.07 3.16 8.14 -2.38 -0.02 3.14 16 44 H 0.08 3.16 8.14 -2.39 -0.02 3.14 16 Total: -1.00 -58.63 329.71 1.78 -56.85 By element: Atomic # 1 Polarization: 34.46 SS G_CDS: -0.19 Total: 34.26 kcal Atomic # 6 Polarization: -43.99 SS G_CDS: 4.16 Total: -39.83 kcal Atomic # 7 Polarization: -76.32 SS G_CDS: -2.40 Total: -78.72 kcal Atomic # 8 Polarization: -16.49 SS G_CDS: -1.82 Total: -18.31 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.74 kcal Total: -58.63 1.78 -56.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393579569.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.332 kcal (2) G-P(sol) polarization free energy of solvation -58.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds