Wall clock time and date at job start Mon Mar 30 2020 06:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47109 * 2 1 4 4 C 1.52997 * 109.47582 * 239.99774 * 2 1 3 5 5 C 1.53007 * 109.46718 * 60.00015 * 4 2 1 6 6 N 1.46900 * 109.46923 * 180.02562 * 5 4 2 7 7 C 1.46898 * 111.00175 * 179.97438 * 6 5 4 8 8 C 1.52998 * 109.47155 * 179.97438 * 7 6 5 9 9 O 1.42895 * 109.47327 * 65.00211 * 8 7 6 10 10 C 1.42898 * 114.00398 * 180.02562 * 9 8 7 11 11 C 1.50700 * 109.47440 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99745 * 359.97438 * 11 10 9 13 13 C 1.37876 * 120.00239 * 180.02562 * 11 10 9 14 14 N 1.31514 * 119.99970 * 179.97438 * 13 11 10 15 15 Si 1.86796 * 120.00067 * 359.97438 * 13 11 10 16 16 H 1.48504 * 109.47393 * 90.00190 * 15 13 11 17 17 H 1.48495 * 109.47465 * 210.00561 * 15 13 11 18 18 H 1.48507 * 109.47251 * 330.00460 * 15 13 11 19 19 C 1.53003 * 109.47107 * 119.99652 * 2 1 3 20 20 C 1.53001 * 117.51964 * 231.28841 * 19 2 1 21 21 C 1.52999 * 60.00190 * 107.47982 * 20 19 2 22 22 H 1.08996 * 109.47501 * 299.99745 * 1 2 3 23 23 H 1.09004 * 109.47169 * 60.00503 * 1 2 3 24 24 H 1.09005 * 109.46926 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47548 * 179.97438 * 3 2 1 26 26 H 1.08996 * 109.46727 * 300.00157 * 3 2 1 27 27 H 1.09002 * 109.47133 * 59.99615 * 3 2 1 28 28 H 1.09000 * 109.47179 * 179.97438 * 4 2 1 29 29 H 1.08996 * 109.47327 * 300.00426 * 4 2 1 30 30 H 1.09000 * 109.46988 * 299.99741 * 5 4 2 31 31 H 1.08997 * 109.47266 * 60.00511 * 5 4 2 32 32 H 1.00906 * 111.00054 * 56.04085 * 6 5 4 33 33 H 1.08997 * 109.46906 * 300.00093 * 7 6 5 34 34 H 1.09002 * 109.46934 * 60.00417 * 7 6 5 35 35 H 1.09003 * 109.47050 * 184.99849 * 8 7 6 36 36 H 1.09001 * 109.47279 * 304.99992 * 8 7 6 37 37 H 1.08999 * 109.47094 * 299.99879 * 10 9 8 38 38 H 1.08997 * 109.47273 * 59.99843 * 10 9 8 39 39 H 0.97004 * 119.99753 * 179.97438 * 14 13 11 40 40 H 1.09002 * 115.54973 * 85.58625 * 19 2 1 41 41 H 1.09001 * 117.49733 * 214.97413 * 20 19 2 42 42 H 1.08995 * 117.49577 * 359.97438 * 20 19 2 43 43 H 1.09004 * 117.50150 * 252.51496 * 21 20 19 44 44 H 1.09004 * 117.49681 * 107.48417 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5301 0.0000 -2.4984 6 7 2.0193 -0.6928 -3.6979 7 6 1.5478 -0.0271 -4.9195 8 6 2.0770 -0.7753 -6.1447 9 8 1.5085 -2.0857 -6.1848 10 6 1.9402 -2.8728 -7.2966 11 6 1.2817 -4.2271 -7.2393 12 1 0.6017 -4.4632 -6.4341 13 6 1.5479 -5.1650 -8.2142 14 7 0.9735 -6.3470 -8.1639 15 14 2.7244 -4.7568 -9.6065 16 1 4.1057 -5.1360 -9.2147 17 1 2.3309 -5.5102 -10.8241 18 1 2.6721 -3.2996 -9.8877 19 6 2.0400 -0.7212 1.2493 20 6 3.0757 0.0040 2.1109 21 6 1.6373 -0.1482 2.6097 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 3.1299 1.4426 0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6766 1.9564 0.8900 28 1 3.1301 -0.7208 -1.2493 29 1 1.6767 -1.7489 -1.2492 30 1 0.4401 -0.0001 -2.4985 31 1 1.8934 1.0277 -2.4985 32 1 1.7496 -1.6651 -3.6891 33 1 0.4580 -0.0274 -4.9359 34 1 1.9113 1.0003 -4.9368 35 1 1.8021 -0.2322 -7.0489 36 1 3.1626 -0.8520 -6.0828 37 1 1.6629 -2.3734 -8.2249 38 1 3.0229 -2.9930 -7.2582 39 1 1.1606 -7.0067 -8.8500 40 1 2.1253 -1.8046 1.1648 41 1 3.8425 -0.6023 2.5932 42 1 3.3942 0.9949 1.7876 43 1 1.0093 0.7428 2.6145 44 1 1.4577 -0.8547 3.4201 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395448393.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:48 Heat of formation + Delta-G solvation = -41.762069 kcal Electronic energy + Delta-G solvation = -18880.600706 eV Core-core repulsion = 16026.145323 eV Total energy + Delta-G solvation = -2854.455384 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.50487 -37.37723 -35.91188 -33.84550 -32.58116 -29.96915 -27.94494 -27.60944 -26.55578 -24.34343 -22.43033 -21.90565 -21.42714 -21.24647 -18.37063 -16.85463 -16.52501 -16.09471 -15.40761 -15.19334 -15.05253 -14.49133 -14.29227 -13.97846 -13.60332 -13.29138 -12.92880 -12.70439 -12.49951 -12.14274 -12.04383 -11.83455 -11.62212 -11.56198 -11.18677 -11.12457 -11.03914 -10.81230 -10.73217 -10.55735 -10.54123 -10.17509 -9.98268 -9.86042 -9.18404 -8.84596 -8.46550 -8.18522 -6.11630 -4.10629 3.25577 3.32326 3.34024 3.60398 4.20377 4.35930 4.48490 4.65962 4.70964 4.77156 4.84439 4.99613 4.99822 5.20071 5.23701 5.34950 5.40208 5.43828 5.49672 5.52098 5.59649 5.66501 5.67785 5.76683 5.80946 5.87256 5.90389 5.93051 5.98562 6.02665 6.10205 6.14299 6.23302 6.30854 6.34749 6.62472 7.01038 7.23717 7.59321 7.66889 8.01852 8.66638 8.99022 9.47810 11.01401 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.033588 B = 0.003154 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.431044 B = 8875.349399 C = 9236.069935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.032 4.032 3 C -0.146 4.146 4 C -0.105 4.105 5 C 0.055 3.945 6 N -0.690 5.690 7 C 0.066 3.934 8 C 0.058 3.942 9 O -0.384 6.384 10 C 0.171 3.829 11 C -0.519 4.519 12 H 0.081 0.919 13 C 0.072 3.928 14 N -0.896 5.896 15 Si 0.877 3.123 16 H -0.273 1.273 17 H -0.282 1.282 18 H -0.266 1.266 19 C -0.139 4.139 20 C -0.185 4.185 21 C -0.181 4.181 22 H 0.052 0.948 23 H 0.058 0.942 24 H 0.056 0.944 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.052 0.948 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.029 0.971 31 H 0.068 0.932 32 H 0.355 0.645 33 H 0.034 0.966 34 H 0.074 0.926 35 H 0.041 0.959 36 H 0.048 0.952 37 H 0.002 0.998 38 H -0.001 1.001 39 H 0.266 0.734 40 H 0.103 0.897 41 H 0.089 0.911 42 H 0.099 0.901 43 H 0.092 0.908 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.368 16.271 17.531 24.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.032 4.032 3 C -0.203 4.203 4 C -0.142 4.142 5 C -0.074 4.074 6 N -0.323 5.323 7 C -0.063 4.063 8 C -0.020 4.020 9 O -0.304 6.304 10 C 0.096 3.904 11 C -0.557 4.557 12 H 0.100 0.900 13 C -0.130 4.130 14 N -0.534 5.534 15 Si 0.703 3.297 16 H -0.199 1.199 17 H -0.208 1.208 18 H -0.191 1.191 19 C -0.157 4.157 20 C -0.222 4.222 21 C -0.218 4.218 22 H 0.071 0.929 23 H 0.077 0.923 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.048 0.952 31 H 0.087 0.913 32 H 0.175 0.825 33 H 0.053 0.947 34 H 0.093 0.907 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.019 0.981 38 H 0.017 0.983 39 H 0.076 0.924 40 H 0.121 0.879 41 H 0.108 0.892 42 H 0.118 0.882 43 H 0.110 0.890 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.823 16.339 17.556 24.149 hybrid contribution -0.127 -0.130 -0.991 1.008 sum 2.696 16.209 16.565 23.333 Atomic orbital electron populations 1.21917 0.94458 1.02076 1.01514 1.20027 0.95308 0.94801 0.93095 1.22055 1.01227 0.95524 1.01509 1.21566 1.01539 0.99037 0.92093 1.22089 0.97049 0.98346 0.89881 1.60484 1.63373 1.07634 1.00802 1.21912 0.97772 0.97195 0.89428 1.22387 0.97519 0.86214 0.95904 1.87842 1.69288 1.23600 1.49622 1.20573 0.94161 0.91370 0.84334 1.20891 1.27833 0.95007 1.11943 0.90044 1.24771 0.95948 0.94688 0.97607 1.69878 1.43392 1.05184 1.34981 0.86836 0.81687 0.78998 0.82136 1.19883 1.20814 1.19116 1.22353 1.03294 0.99067 0.91003 1.23126 0.92395 1.02561 1.04132 1.22922 0.98196 1.03238 0.97487 0.92882 0.92334 0.92480 0.92168 0.92297 0.92942 0.90988 0.91769 0.95240 0.91332 0.82514 0.94736 0.90732 0.94065 0.93418 0.98062 0.98282 0.92371 0.87856 0.89234 0.88226 0.88962 0.89176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 7.96 37.16 0.30 -0.98 16 2 C -0.03 -0.29 0.65 -154.51 -0.10 -0.39 16 3 C -0.15 -1.20 6.72 37.16 0.25 -0.95 16 4 C -0.10 -1.13 4.51 -26.73 -0.12 -1.25 16 5 C 0.06 0.66 4.98 -3.82 -0.02 0.64 16 6 N -0.69 -10.25 6.50 -113.78 -0.74 -10.99 16 7 C 0.07 0.99 6.10 -3.83 -0.02 0.96 16 8 C 0.06 1.03 6.28 37.16 0.23 1.26 16 9 O -0.38 -8.94 9.85 -35.23 -0.35 -9.29 16 10 C 0.17 4.39 4.76 36.01 0.17 4.56 16 11 C -0.52 -15.53 9.99 -34.44 -0.34 -15.87 16 12 H 0.08 2.65 8.06 -52.49 -0.42 2.23 16 13 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 14 N -0.90 -27.78 13.96 55.43 0.77 -27.01 16 15 Si 0.88 21.58 27.47 -169.99 -4.67 16.91 16 16 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 18 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 19 C -0.14 -1.22 5.15 -90.61 -0.47 -1.69 16 20 C -0.19 -1.47 9.57 -26.73 -0.26 -1.73 16 21 C -0.18 -1.41 9.38 -26.73 -0.25 -1.66 16 22 H 0.05 0.43 7.29 -51.93 -0.38 0.05 16 23 H 0.06 0.53 6.43 -51.93 -0.33 0.20 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.50 6.97 -51.93 -0.36 0.13 16 26 H 0.06 0.49 6.43 -51.93 -0.33 0.15 16 27 H 0.05 0.39 7.07 -51.93 -0.37 0.03 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.03 0.35 6.43 -51.93 -0.33 0.02 16 31 H 0.07 0.76 6.43 -51.93 -0.33 0.42 16 32 H 0.36 5.93 8.29 -39.29 -0.33 5.61 16 33 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 35 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.00 0.04 7.20 -51.93 -0.37 -0.33 16 38 H 0.00 -0.01 7.57 -51.93 -0.39 -0.41 16 39 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 40 H 0.10 0.96 8.11 -51.93 -0.42 0.54 16 41 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.10 0.75 5.85 -51.93 -0.30 0.45 16 43 H 0.09 0.68 7.07 -51.93 -0.37 0.31 16 44 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 340.84 15.07 5.14 5.14 Total: -1.00 -30.86 340.84 -8.60 -39.45 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -8.02 Total: 0.85 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: -0.73 Total: -15.07 kcal Atomic # 7 Polarization: -38.03 SS G_CDS: 0.03 Total: -38.00 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: -0.35 Total: -9.29 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.67 Total: 16.91 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.86 -8.60 -39.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395448393.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.307 kcal (2) G-P(sol) polarization free energy of solvation -30.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds