Wall clock time and date at job start Mon Mar 30 2020 06:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47109 * 2 1 4 4 C 1.52997 * 109.47582 * 239.99774 * 2 1 3 5 5 C 1.53007 * 109.46718 * 60.00015 * 4 2 1 6 6 N 1.46900 * 109.46923 * 180.02562 * 5 4 2 7 7 C 1.46898 * 111.00175 * 179.97438 * 6 5 4 8 8 C 1.52998 * 109.47155 * 179.97438 * 7 6 5 9 9 O 1.42895 * 109.47327 * 65.00211 * 8 7 6 10 10 C 1.42898 * 114.00398 * 180.02562 * 9 8 7 11 11 C 1.50700 * 109.47440 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99745 * 359.97438 * 11 10 9 13 13 C 1.37876 * 120.00239 * 180.02562 * 11 10 9 14 14 N 1.31514 * 119.99970 * 179.97438 * 13 11 10 15 15 Si 1.86796 * 120.00067 * 359.97438 * 13 11 10 16 16 H 1.48504 * 109.47393 * 90.00190 * 15 13 11 17 17 H 1.48495 * 109.47465 * 210.00561 * 15 13 11 18 18 H 1.48507 * 109.47251 * 330.00460 * 15 13 11 19 19 C 1.53003 * 109.47107 * 119.99652 * 2 1 3 20 20 C 1.53001 * 117.51964 * 231.28841 * 19 2 1 21 21 C 1.52999 * 60.00190 * 107.47982 * 20 19 2 22 22 H 1.08996 * 109.47501 * 299.99745 * 1 2 3 23 23 H 1.09004 * 109.47169 * 60.00503 * 1 2 3 24 24 H 1.09005 * 109.46926 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47548 * 179.97438 * 3 2 1 26 26 H 1.08996 * 109.46727 * 300.00157 * 3 2 1 27 27 H 1.09002 * 109.47133 * 59.99615 * 3 2 1 28 28 H 1.09000 * 109.47179 * 179.97438 * 4 2 1 29 29 H 1.08996 * 109.47327 * 300.00426 * 4 2 1 30 30 H 1.09000 * 109.46988 * 299.99741 * 5 4 2 31 31 H 1.08997 * 109.47266 * 60.00511 * 5 4 2 32 32 H 1.00906 * 111.00054 * 56.04085 * 6 5 4 33 33 H 1.08997 * 109.46906 * 300.00093 * 7 6 5 34 34 H 1.09002 * 109.46934 * 60.00417 * 7 6 5 35 35 H 1.09003 * 109.47050 * 184.99849 * 8 7 6 36 36 H 1.09001 * 109.47279 * 304.99992 * 8 7 6 37 37 H 1.08999 * 109.47094 * 299.99879 * 10 9 8 38 38 H 1.08997 * 109.47273 * 59.99843 * 10 9 8 39 39 H 0.97004 * 119.99753 * 179.97438 * 14 13 11 40 40 H 1.09002 * 115.54973 * 85.58625 * 19 2 1 41 41 H 1.09001 * 117.49733 * 214.97413 * 20 19 2 42 42 H 1.08995 * 117.49577 * 359.97438 * 20 19 2 43 43 H 1.09004 * 117.50150 * 252.51496 * 21 20 19 44 44 H 1.09004 * 117.49681 * 107.48417 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5301 0.0000 -2.4984 6 7 2.0193 -0.6928 -3.6979 7 6 1.5478 -0.0271 -4.9195 8 6 2.0770 -0.7753 -6.1447 9 8 1.5085 -2.0857 -6.1848 10 6 1.9402 -2.8728 -7.2966 11 6 1.2817 -4.2271 -7.2393 12 1 0.6017 -4.4632 -6.4341 13 6 1.5479 -5.1650 -8.2142 14 7 0.9735 -6.3470 -8.1639 15 14 2.7244 -4.7568 -9.6065 16 1 4.1057 -5.1360 -9.2147 17 1 2.3309 -5.5102 -10.8241 18 1 2.6721 -3.2996 -9.8877 19 6 2.0400 -0.7212 1.2493 20 6 3.0757 0.0040 2.1109 21 6 1.6373 -0.1482 2.6097 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 3.1299 1.4426 0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6766 1.9564 0.8900 28 1 3.1301 -0.7208 -1.2493 29 1 1.6767 -1.7489 -1.2492 30 1 0.4401 -0.0001 -2.4985 31 1 1.8934 1.0277 -2.4985 32 1 1.7496 -1.6651 -3.6891 33 1 0.4580 -0.0274 -4.9359 34 1 1.9113 1.0003 -4.9368 35 1 1.8021 -0.2322 -7.0489 36 1 3.1626 -0.8520 -6.0828 37 1 1.6629 -2.3734 -8.2249 38 1 3.0229 -2.9930 -7.2582 39 1 1.1606 -7.0067 -8.8500 40 1 2.1253 -1.8046 1.1648 41 1 3.8425 -0.6023 2.5932 42 1 3.3942 0.9949 1.7876 43 1 1.0093 0.7428 2.6145 44 1 1.4577 -0.8547 3.4201 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395448393.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:16:47 Heat of formation + Delta-G solvation = -61.558138 kcal Electronic energy + Delta-G solvation = -18881.459128 eV Core-core repulsion = 16026.145323 eV Total energy + Delta-G solvation = -2855.313806 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.24391 -38.93503 -37.08605 -35.03722 -34.53429 -31.30616 -29.73066 -28.28989 -27.76166 -25.21055 -24.00756 -23.04423 -22.75479 -22.11369 -19.15185 -19.01282 -17.62815 -17.29916 -16.84449 -16.46713 -16.39951 -15.86908 -15.35626 -15.08859 -14.88283 -14.61795 -14.17403 -13.91342 -13.60309 -13.49712 -13.12988 -13.06304 -12.70768 -12.61937 -12.51491 -12.35789 -12.13776 -11.85541 -11.83624 -11.81465 -11.67022 -11.36288 -11.32309 -10.95456 -10.91247 -10.68297 -10.35786 -9.33644 -8.38277 -6.46237 1.33245 1.36204 1.47053 2.28909 2.94265 2.94504 3.09096 3.22382 3.69941 3.91250 4.04497 4.12097 4.16644 4.25542 4.30528 4.37223 4.47421 4.50991 4.54829 4.61203 4.63701 4.74000 4.80445 4.82440 4.85567 4.90193 4.99317 5.01021 5.06144 5.09817 5.14270 5.18771 5.24435 5.31861 5.40469 5.42902 5.52159 5.56175 5.92287 6.13971 6.38131 6.57614 6.73551 7.18341 8.78824 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.033588 B = 0.003154 C = 0.003031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.431044 B = 8875.349399 C = 9236.069935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.026 4.026 3 C -0.143 4.143 4 C -0.099 4.099 5 C 0.059 3.941 6 N -0.700 5.700 7 C 0.071 3.929 8 C 0.050 3.950 9 O -0.407 6.407 10 C 0.181 3.819 11 C -0.546 4.546 12 H 0.030 0.970 13 C 0.012 3.988 14 N -0.942 5.942 15 Si 0.956 3.044 16 H -0.260 1.260 17 H -0.273 1.273 18 H -0.245 1.245 19 C -0.154 4.154 20 C -0.183 4.183 21 C -0.175 4.175 22 H 0.064 0.936 23 H 0.056 0.944 24 H 0.045 0.955 25 H 0.060 0.940 26 H 0.059 0.941 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.048 0.952 30 H 0.029 0.971 31 H 0.084 0.916 32 H 0.340 0.660 33 H 0.029 0.971 34 H 0.107 0.893 35 H 0.059 0.941 36 H 0.052 0.948 37 H 0.012 0.988 38 H 0.010 0.990 39 H 0.273 0.727 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.106 0.894 43 H 0.099 0.901 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.724 18.581 17.135 25.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.027 4.027 3 C -0.200 4.200 4 C -0.137 4.137 5 C -0.069 4.069 6 N -0.331 5.331 7 C -0.058 4.058 8 C -0.027 4.027 9 O -0.327 6.327 10 C 0.106 3.894 11 C -0.583 4.583 12 H 0.048 0.952 13 C -0.186 4.186 14 N -0.582 5.582 15 Si 0.778 3.222 16 H -0.184 1.184 17 H -0.198 1.198 18 H -0.169 1.169 19 C -0.172 4.172 20 C -0.220 4.220 21 C -0.211 4.211 22 H 0.083 0.917 23 H 0.075 0.925 24 H 0.064 0.936 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.066 0.934 30 H 0.047 0.953 31 H 0.102 0.898 32 H 0.157 0.843 33 H 0.047 0.953 34 H 0.125 0.875 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.030 0.970 38 H 0.027 0.973 39 H 0.082 0.918 40 H 0.110 0.890 41 H 0.110 0.890 42 H 0.124 0.876 43 H 0.118 0.882 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.175 18.681 17.186 25.725 hybrid contribution -0.616 -0.865 -0.757 1.304 sum 3.559 17.816 16.429 24.495 Atomic orbital electron populations 1.21907 0.94429 1.01526 1.01982 1.19960 0.95254 0.95302 0.92190 1.22030 1.01261 0.94629 1.02104 1.21509 1.00970 0.98409 0.92821 1.22141 0.97026 0.98786 0.88988 1.60565 1.63674 1.06966 1.01911 1.21947 0.97441 0.98146 0.88257 1.22719 0.97800 0.83991 0.98191 1.87808 1.70060 1.26059 1.48796 1.20286 0.93989 0.89648 0.85508 1.21166 1.28008 0.97990 1.11167 0.95168 1.25852 0.97869 0.94105 1.00762 1.70033 1.45082 1.06588 1.36460 0.85592 0.78904 0.80003 0.77742 1.18446 1.19795 1.16876 1.22313 1.04748 0.98596 0.91570 1.23192 0.92533 1.02701 1.03527 1.22980 0.98154 1.03359 0.96647 0.91743 0.92486 0.93570 0.92098 0.92163 0.91884 0.91701 0.93362 0.95291 0.89821 0.84278 0.95316 0.87528 0.92332 0.92939 0.97043 0.97253 0.91782 0.89005 0.88961 0.87577 0.88235 0.88716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 7.96 71.98 0.57 -1.85 16 2 C -0.03 -0.46 0.65 -52.18 -0.03 -0.49 16 3 C -0.14 -2.08 6.72 71.98 0.48 -1.59 16 4 C -0.10 -2.14 4.51 30.60 0.14 -2.00 16 5 C 0.06 1.35 4.98 86.31 0.43 1.78 16 6 N -0.70 -20.38 6.50 -513.89 -3.34 -23.72 16 7 C 0.07 2.00 6.10 86.30 0.53 2.53 16 8 C 0.05 1.70 6.28 71.98 0.45 2.16 16 9 O -0.41 -18.98 9.85 -148.98 -1.47 -20.44 16 10 C 0.18 9.21 4.76 71.24 0.34 9.55 16 11 C -0.55 -33.58 9.99 25.60 0.26 -33.33 16 12 H 0.03 2.09 8.06 -2.91 -0.02 2.06 16 13 C 0.01 0.72 5.47 84.65 0.46 1.18 16 14 N -0.94 -59.76 13.96 21.45 0.30 -59.46 16 15 Si 0.96 43.74 27.47 68.60 1.88 45.62 16 16 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 17 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 18 H -0.25 -10.33 6.54 99.48 0.65 -9.67 16 19 C -0.15 -2.61 5.15 -10.79 -0.06 -2.67 16 20 C -0.18 -2.64 9.57 30.59 0.29 -2.35 16 21 C -0.17 -2.45 9.38 30.60 0.29 -2.16 16 22 H 0.06 0.95 7.29 -2.39 -0.02 0.93 16 23 H 0.06 0.99 6.43 -2.39 -0.02 0.97 16 24 H 0.05 0.88 8.14 -2.38 -0.02 0.86 16 25 H 0.06 0.88 6.97 -2.39 -0.02 0.86 16 26 H 0.06 0.86 6.43 -2.39 -0.02 0.84 16 27 H 0.06 0.79 7.07 -2.39 -0.02 0.77 16 28 H 0.06 1.48 8.14 -2.39 -0.02 1.47 16 29 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.03 0.67 6.43 -2.39 -0.02 0.66 16 31 H 0.08 1.67 6.43 -2.39 -0.02 1.66 16 32 H 0.34 11.63 8.29 -89.69 -0.74 10.89 16 33 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.01 0.57 7.20 -2.39 -0.02 0.56 16 38 H 0.01 0.47 7.57 -2.39 -0.02 0.45 16 39 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 40 H 0.09 1.75 8.11 -2.39 -0.02 1.73 16 41 H 0.09 1.27 8.14 -2.39 -0.02 1.26 16 42 H 0.11 1.40 5.85 -2.39 -0.01 1.38 16 43 H 0.10 1.26 7.07 -2.39 -0.02 1.24 16 44 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 Total: -1.00 -67.76 340.84 1.68 -66.08 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: 0.15 Total: 21.16 kcal Atomic # 6 Polarization: -33.40 SS G_CDS: 4.15 Total: -29.24 kcal Atomic # 7 Polarization: -80.13 SS G_CDS: -3.04 Total: -83.18 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -1.47 Total: -20.44 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 1.88 Total: 45.62 kcal Total: -67.76 1.68 -66.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395448393.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.525 kcal (2) G-P(sol) polarization free energy of solvation -67.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds