Wall clock time and date at job start Mon Mar 30 2020 07:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46867 * 2 1 4 4 H 1.09002 * 109.47398 * 54.99853 * 3 2 1 5 5 C 1.52997 * 109.47060 * 294.99684 * 3 2 1 6 6 C 1.52992 * 109.47482 * 180.02562 * 5 3 2 7 7 C 1.53002 * 109.47106 * 60.00162 * 6 5 3 8 8 C 1.53002 * 109.47128 * 300.00123 * 7 6 5 9 9 H 1.08998 * 109.47844 * 180.02562 * 8 7 6 10 10 N 1.46906 * 109.47053 * 300.00120 * 8 7 6 11 11 C 1.46897 * 110.99851 * 274.99639 * 10 8 7 12 12 C 1.52998 * 109.47146 * 179.97438 * 11 10 8 13 13 O 1.42895 * 109.47119 * 65.00153 * 12 11 10 14 14 C 1.42905 * 113.99924 * 180.02562 * 13 12 11 15 15 C 1.50707 * 109.46881 * 179.97438 * 14 13 12 16 16 H 1.07995 * 119.99842 * 359.97438 * 15 14 13 17 17 C 1.37872 * 119.99502 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00743 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99663 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46878 * 59.99660 * 19 17 15 21 21 H 1.48502 * 109.47044 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47028 * 299.99475 * 19 17 15 23 23 C 1.52997 * 109.46978 * 59.99726 * 8 7 6 24 24 H 1.09001 * 109.47099 * 60.00379 * 1 2 3 25 25 H 1.09004 * 109.46908 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47443 * 300.00098 * 1 2 3 27 27 H 1.08990 * 109.47398 * 239.99928 * 2 1 3 28 28 H 1.09001 * 109.47099 * 119.99621 * 2 1 3 29 29 H 1.09002 * 109.47153 * 300.00319 * 5 3 2 30 30 H 1.08998 * 109.47533 * 59.99948 * 5 3 2 31 31 H 1.09002 * 109.47103 * 300.00247 * 6 5 3 32 32 H 1.08996 * 109.47747 * 179.97438 * 6 5 3 33 33 H 1.08996 * 109.47407 * 180.02562 * 7 6 5 34 34 H 1.09002 * 109.47596 * 60.00070 * 7 6 5 35 35 H 1.00899 * 110.99829 * 38.95133 * 10 8 7 36 36 H 1.08998 * 109.47342 * 299.99834 * 11 10 8 37 37 H 1.09005 * 109.47066 * 60.00269 * 11 10 8 38 38 H 1.09002 * 109.47209 * 185.00530 * 12 11 10 39 39 H 1.09003 * 109.47281 * 304.99747 * 12 11 10 40 40 H 1.08998 * 109.47008 * 299.99619 * 14 13 12 41 41 H 1.09002 * 109.47121 * 60.00257 * 14 13 12 42 42 H 0.97000 * 120.00486 * 180.02562 * 18 17 15 43 43 H 1.09000 * 109.47140 * 180.02562 * 23 8 7 44 44 H 1.09002 * 109.47497 * 60.00450 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6353 2.1265 -1.3074 6 6 2.1457 3.5688 -1.3077 7 6 3.6705 3.5701 -1.1823 8 6 4.0754 2.8862 0.1251 9 1 5.1616 2.8875 0.2148 10 7 3.4900 3.6130 1.2596 11 6 4.3428 4.7405 1.6589 12 6 3.7015 5.4718 2.8399 13 8 3.6659 4.6043 3.9748 14 6 3.0820 5.1934 5.1385 15 6 3.0958 4.1952 6.2676 16 1 3.5088 3.2096 6.1119 17 6 2.5803 4.5402 7.4989 18 7 2.0769 5.7403 7.6884 19 14 2.5982 3.3032 8.8986 20 1 3.9994 2.9097 9.1936 21 1 1.9913 3.9153 10.1079 22 1 1.8185 2.1015 8.5072 23 6 3.5649 1.4439 0.1254 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 2.0699 1.5874 -2.1492 30 1 0.5490 2.1252 -1.3971 31 1 1.7114 4.1081 -0.4659 32 1 1.8578 4.0559 -2.2393 33 1 4.0342 4.5977 -1.1821 34 1 4.1049 3.0308 -2.0241 35 1 2.5548 3.9252 1.0453 36 1 5.3244 4.3678 1.9516 37 1 4.4507 5.4291 0.8209 38 1 4.2874 6.3593 3.0791 39 1 2.6859 5.7672 2.5762 40 1 3.6546 6.0752 5.4257 41 1 2.0535 5.4825 4.9223 42 1 1.7146 5.9830 8.5548 43 1 3.8528 0.9568 1.0570 44 1 3.9991 0.9045 -0.7163 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395455617.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:36:56 Heat of formation + Delta-G solvation = -82.092937 kcal Electronic energy + Delta-G solvation = -19588.069515 eV Core-core repulsion = 16731.865253 eV Total energy + Delta-G solvation = -2856.204262 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.55964 -36.81925 -35.17072 -33.02390 -32.44335 -30.54632 -28.99986 -27.55427 -26.22089 -23.76798 -22.49374 -22.23629 -21.49975 -20.60778 -18.97225 -16.42096 -16.01922 -15.54077 -15.29355 -14.94146 -14.84173 -14.33007 -14.11598 -13.83312 -13.50642 -13.18141 -12.94621 -12.60953 -12.45555 -12.16735 -11.92613 -11.67801 -11.54300 -11.39502 -11.14163 -11.02282 -10.88301 -10.78449 -10.68436 -10.48387 -10.25174 -10.08147 -9.93542 -9.83090 -9.03257 -8.73448 -8.08820 -8.01923 -6.04308 -4.05144 3.37089 3.39056 3.43672 4.37135 4.41534 4.64350 4.65781 4.77660 4.96125 5.04691 5.07512 5.22642 5.32061 5.33251 5.43235 5.45520 5.55162 5.61096 5.62953 5.67629 5.71820 5.76134 5.87974 5.90787 5.98557 6.02901 6.08717 6.12310 6.15327 6.17435 6.23224 6.33517 6.38662 6.47336 6.58306 7.17543 7.34448 7.50801 7.69170 7.87510 8.24112 8.69579 9.09603 9.59504 11.07375 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.020109 B = 0.004513 C = 0.003952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.064116 B = 6203.374206 C = 7082.908675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.118 4.118 3 C -0.088 4.088 4 H 0.081 0.919 5 C -0.113 4.113 6 C -0.121 4.121 7 C -0.150 4.150 8 C 0.087 3.913 9 H 0.074 0.926 10 N -0.668 5.668 11 C 0.064 3.936 12 C 0.065 3.935 13 O -0.379 6.379 14 C 0.194 3.806 15 C -0.510 4.510 16 H 0.066 0.934 17 C 0.055 3.945 18 N -0.901 5.901 19 Si 0.907 3.093 20 H -0.275 1.275 21 H -0.287 1.287 22 H -0.275 1.275 23 C -0.099 4.099 24 H 0.053 0.947 25 H 0.049 0.951 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.339 0.661 36 H 0.076 0.924 37 H 0.031 0.969 38 H 0.038 0.962 39 H 0.032 0.968 40 H 0.002 0.998 41 H 0.003 0.997 42 H 0.263 0.737 43 H 0.071 0.929 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.321 -6.165 -19.916 20.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.156 4.156 3 C -0.107 4.107 4 H 0.100 0.900 5 C -0.151 4.151 6 C -0.159 4.159 7 C -0.189 4.189 8 C -0.024 4.024 9 H 0.092 0.908 10 N -0.301 5.301 11 C -0.065 4.065 12 C -0.013 4.013 13 O -0.299 6.299 14 C 0.119 3.881 15 C -0.548 4.548 16 H 0.084 0.916 17 C -0.145 4.145 18 N -0.541 5.541 19 Si 0.734 3.266 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.200 1.200 23 C -0.137 4.137 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.160 0.840 36 H 0.095 0.905 37 H 0.049 0.951 38 H 0.056 0.944 39 H 0.050 0.950 40 H 0.019 0.981 41 H 0.020 0.980 42 H 0.073 0.927 43 H 0.089 0.911 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.563 -6.662 -19.282 20.408 hybrid contribution -0.339 0.524 0.052 0.626 sum 0.225 -6.138 -19.230 20.187 Atomic orbital electron populations 1.21825 0.96186 1.01185 1.01932 1.21545 0.95693 0.96695 1.01619 1.21163 0.95872 0.95686 0.97968 0.90019 1.21629 1.00395 0.95268 0.97797 1.21528 0.95632 0.97288 1.01454 1.22221 0.96427 1.00807 0.99478 1.21553 0.98696 0.94131 0.87978 0.90781 1.60516 1.05308 1.27281 1.37005 1.22001 0.97835 0.91671 0.94979 1.22228 0.98075 0.92781 0.88217 1.87959 1.82707 1.39480 1.19732 1.20175 0.91935 0.94084 0.81882 1.21033 1.39457 0.99947 0.94382 0.91569 1.24940 0.95225 0.95718 0.98645 1.69957 1.40685 1.19262 1.24175 0.86410 0.78456 0.80998 0.80692 1.20055 1.21238 1.20013 1.21550 0.95116 0.95431 1.01647 0.92830 0.93228 0.92463 0.92623 0.91864 0.92435 0.92007 0.91922 0.92270 0.92405 0.91761 0.84005 0.90534 0.95090 0.94357 0.94993 0.98064 0.97957 0.92719 0.91051 0.92518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.67 37.16 0.36 -1.13 16 2 C -0.12 -1.20 5.40 -26.73 -0.14 -1.35 16 3 C -0.09 -0.97 1.95 -90.62 -0.18 -1.15 16 4 H 0.08 1.09 7.21 -51.93 -0.37 0.71 16 5 C -0.11 -1.08 4.96 -26.74 -0.13 -1.22 16 6 C -0.12 -1.18 5.67 -26.73 -0.15 -1.33 16 7 C -0.15 -1.50 5.52 -26.73 -0.15 -1.65 16 8 C 0.09 1.04 2.86 -67.71 -0.19 0.84 16 9 H 0.07 0.89 7.80 -51.93 -0.40 0.49 16 10 N -0.67 -9.92 5.71 -106.72 -0.61 -10.53 16 11 C 0.06 0.98 5.87 -3.83 -0.02 0.96 16 12 C 0.07 1.24 6.22 37.16 0.23 1.47 16 13 O -0.38 -9.48 10.27 -35.23 -0.36 -9.84 16 14 C 0.19 5.48 5.69 36.01 0.20 5.68 16 15 C -0.51 -15.43 9.43 -34.44 -0.32 -15.76 16 16 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.90 -27.49 13.29 55.43 0.74 -26.75 16 19 Si 0.91 22.32 29.54 -169.99 -5.02 17.30 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 23 C -0.10 -1.14 4.92 -26.73 -0.13 -1.27 16 24 H 0.05 0.47 6.57 -51.93 -0.34 0.13 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.57 6.56 -51.93 -0.34 0.23 16 31 H 0.06 0.67 6.26 -51.93 -0.32 0.34 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.58 7.45 -51.93 -0.39 0.19 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.34 4.89 5.56 -39.29 -0.22 4.67 16 36 H 0.08 1.21 8.05 -51.93 -0.42 0.80 16 37 H 0.03 0.40 7.44 -51.93 -0.39 0.01 16 38 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.00 0.05 8.14 -51.93 -0.42 -0.38 16 41 H 0.00 0.08 8.14 -51.93 -0.42 -0.35 16 42 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 43 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 338.61 15.07 5.10 5.10 Total: -1.00 -31.26 338.61 -9.12 -40.38 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -8.24 Total: -1.30 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: -0.73 Total: -14.35 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: 0.13 Total: -37.28 kcal Atomic # 8 Polarization: -9.48 SS G_CDS: -0.36 Total: -9.84 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.26 -9.12 -40.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395455617.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.715 kcal (2) G-P(sol) polarization free energy of solvation -31.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds