Wall clock time and date at job start Mon Mar 30 2020 07:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46867 * 2 1 4 4 H 1.09002 * 109.47398 * 54.99853 * 3 2 1 5 5 C 1.52997 * 109.47060 * 294.99684 * 3 2 1 6 6 C 1.52992 * 109.47482 * 180.02562 * 5 3 2 7 7 C 1.53002 * 109.47106 * 60.00162 * 6 5 3 8 8 C 1.53002 * 109.47128 * 300.00123 * 7 6 5 9 9 H 1.08998 * 109.47844 * 180.02562 * 8 7 6 10 10 N 1.46906 * 109.47053 * 300.00120 * 8 7 6 11 11 C 1.46897 * 110.99851 * 274.99639 * 10 8 7 12 12 C 1.52998 * 109.47146 * 179.97438 * 11 10 8 13 13 O 1.42895 * 109.47119 * 65.00153 * 12 11 10 14 14 C 1.42905 * 113.99924 * 180.02562 * 13 12 11 15 15 C 1.50707 * 109.46881 * 179.97438 * 14 13 12 16 16 H 1.07995 * 119.99842 * 359.97438 * 15 14 13 17 17 C 1.37872 * 119.99502 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00743 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99663 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.46878 * 59.99660 * 19 17 15 21 21 H 1.48502 * 109.47044 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47028 * 299.99475 * 19 17 15 23 23 C 1.52997 * 109.46978 * 59.99726 * 8 7 6 24 24 H 1.09001 * 109.47099 * 60.00379 * 1 2 3 25 25 H 1.09004 * 109.46908 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47443 * 300.00098 * 1 2 3 27 27 H 1.08990 * 109.47398 * 239.99928 * 2 1 3 28 28 H 1.09001 * 109.47099 * 119.99621 * 2 1 3 29 29 H 1.09002 * 109.47153 * 300.00319 * 5 3 2 30 30 H 1.08998 * 109.47533 * 59.99948 * 5 3 2 31 31 H 1.09002 * 109.47103 * 300.00247 * 6 5 3 32 32 H 1.08996 * 109.47747 * 179.97438 * 6 5 3 33 33 H 1.08996 * 109.47407 * 180.02562 * 7 6 5 34 34 H 1.09002 * 109.47596 * 60.00070 * 7 6 5 35 35 H 1.00899 * 110.99829 * 38.95133 * 10 8 7 36 36 H 1.08998 * 109.47342 * 299.99834 * 11 10 8 37 37 H 1.09005 * 109.47066 * 60.00269 * 11 10 8 38 38 H 1.09002 * 109.47209 * 185.00530 * 12 11 10 39 39 H 1.09003 * 109.47281 * 304.99747 * 12 11 10 40 40 H 1.08998 * 109.47008 * 299.99619 * 14 13 12 41 41 H 1.09002 * 109.47121 * 60.00257 * 14 13 12 42 42 H 0.97000 * 120.00486 * 180.02562 * 18 17 15 43 43 H 1.09000 * 109.47140 * 180.02562 * 23 8 7 44 44 H 1.09002 * 109.47497 * 60.00450 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6353 2.1265 -1.3074 6 6 2.1457 3.5688 -1.3077 7 6 3.6705 3.5701 -1.1823 8 6 4.0754 2.8862 0.1251 9 1 5.1616 2.8875 0.2148 10 7 3.4900 3.6130 1.2596 11 6 4.3428 4.7405 1.6589 12 6 3.7015 5.4718 2.8399 13 8 3.6659 4.6043 3.9748 14 6 3.0820 5.1934 5.1385 15 6 3.0958 4.1952 6.2676 16 1 3.5088 3.2096 6.1119 17 6 2.5803 4.5402 7.4989 18 7 2.0769 5.7403 7.6884 19 14 2.5982 3.3032 8.8986 20 1 3.9994 2.9097 9.1936 21 1 1.9913 3.9153 10.1079 22 1 1.8185 2.1015 8.5072 23 6 3.5649 1.4439 0.1254 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 2.0699 1.5874 -2.1492 30 1 0.5490 2.1252 -1.3971 31 1 1.7114 4.1081 -0.4659 32 1 1.8578 4.0559 -2.2393 33 1 4.0342 4.5977 -1.1821 34 1 4.1049 3.0308 -2.0241 35 1 2.5548 3.9252 1.0453 36 1 5.3244 4.3678 1.9516 37 1 4.4507 5.4291 0.8209 38 1 4.2874 6.3593 3.0791 39 1 2.6859 5.7672 2.5762 40 1 3.6546 6.0752 5.4257 41 1 2.0535 5.4825 4.9223 42 1 1.7146 5.9830 8.5548 43 1 3.8528 0.9568 1.0570 44 1 3.9991 0.9045 -0.7163 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395455617.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:36:55 Heat of formation + Delta-G solvation = -101.232363 kcal Electronic energy + Delta-G solvation = -19588.899462 eV Core-core repulsion = 16731.865253 eV Total energy + Delta-G solvation = -2857.034209 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.48640 -38.59638 -36.32925 -34.91895 -33.76499 -31.60162 -30.08443 -29.25565 -27.80530 -24.63780 -24.44754 -23.37423 -22.85490 -21.48059 -19.88313 -18.62856 -17.56960 -16.90507 -16.73158 -16.30784 -15.91590 -15.81195 -15.36609 -15.13509 -14.67537 -14.40298 -14.04024 -13.82968 -13.73486 -13.43670 -13.16735 -12.87793 -12.83740 -12.79744 -12.57501 -12.35309 -12.26327 -12.17707 -11.88754 -11.78776 -11.62927 -11.27384 -11.16333 -10.92204 -10.85024 -10.72378 -10.18724 -9.13062 -8.31102 -6.43201 1.39532 1.44746 1.53079 2.35672 3.02367 3.21886 3.31555 3.80315 3.83402 3.93395 4.18474 4.22647 4.25824 4.31129 4.42325 4.51767 4.55228 4.60486 4.64395 4.66390 4.75950 4.81656 4.82435 4.85938 4.90116 5.02472 5.08296 5.12553 5.17689 5.20029 5.22854 5.29176 5.37206 5.38875 5.48267 5.55988 5.60666 5.69610 5.98186 6.25515 6.54123 6.60577 6.87183 7.29038 8.81111 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.020109 B = 0.004513 C = 0.003952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.064116 B = 6203.374206 C = 7082.908675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.086 4.086 4 H 0.051 0.949 5 C -0.108 4.108 6 C -0.121 4.121 7 C -0.142 4.142 8 C 0.086 3.914 9 H 0.073 0.927 10 N -0.691 5.691 11 C 0.075 3.925 12 C 0.055 3.945 13 O -0.396 6.396 14 C 0.209 3.791 15 C -0.547 4.547 16 H 0.059 0.941 17 C 0.007 3.993 18 N -0.931 5.931 19 Si 0.982 3.018 20 H -0.265 1.265 21 H -0.273 1.273 22 H -0.266 1.266 23 C -0.097 4.097 24 H 0.064 0.936 25 H 0.058 0.942 26 H 0.040 0.960 27 H 0.071 0.929 28 H 0.048 0.952 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.048 0.952 32 H 0.074 0.926 33 H 0.059 0.941 34 H 0.080 0.920 35 H 0.339 0.661 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.046 0.954 39 H 0.036 0.964 40 H -0.016 1.016 41 H -0.018 1.018 42 H 0.271 0.729 43 H 0.046 0.954 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.492 -7.078 -21.127 22.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.104 4.104 4 H 0.070 0.930 5 C -0.145 4.145 6 C -0.159 4.159 7 C -0.181 4.181 8 C -0.024 4.024 9 H 0.091 0.909 10 N -0.325 5.325 11 C -0.054 4.054 12 C -0.022 4.022 13 O -0.315 6.315 14 C 0.133 3.867 15 C -0.584 4.584 16 H 0.077 0.923 17 C -0.191 4.191 18 N -0.571 5.571 19 Si 0.805 3.195 20 H -0.190 1.190 21 H -0.198 1.198 22 H -0.191 1.191 23 C -0.135 4.135 24 H 0.083 0.917 25 H 0.077 0.923 26 H 0.059 0.941 27 H 0.090 0.910 28 H 0.067 0.933 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.066 0.934 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.099 0.901 35 H 0.160 0.840 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.065 0.935 39 H 0.054 0.946 40 H 0.001 0.999 41 H 0.000 1.000 42 H 0.079 0.921 43 H 0.064 0.936 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.741 -7.567 -20.522 21.886 hybrid contribution -0.392 0.850 0.364 1.004 sum 0.350 -6.717 -20.158 21.251 Atomic orbital electron populations 1.21813 0.95777 1.01717 1.01676 1.21533 0.96059 0.96127 1.01703 1.21095 0.95385 0.96059 0.97903 0.93024 1.21585 1.00754 0.95124 0.97048 1.21534 0.95407 0.97326 1.01615 1.22136 0.96586 1.00820 0.98526 1.21606 0.98451 0.94130 0.88183 0.90897 1.60483 1.05527 1.27370 1.39076 1.21880 0.96941 0.92311 0.94227 1.22598 0.99015 0.93098 0.87520 1.87915 1.82326 1.40970 1.20327 1.19795 0.90578 0.93207 0.83075 1.21346 1.40981 1.00164 0.95939 0.92296 1.25948 0.93950 0.97913 1.01307 1.70063 1.40594 1.21107 1.25306 0.85252 0.79055 0.78257 0.76948 1.19005 1.19787 1.19129 1.21530 0.95569 0.95237 1.01191 0.91720 0.92315 0.94072 0.90996 0.93268 0.90990 0.91621 0.93351 0.90718 0.92184 0.90105 0.83955 0.91167 0.91732 0.93540 0.94614 0.99873 1.00007 0.92055 0.93557 0.90447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 9.67 71.98 0.70 -2.13 16 2 C -0.12 -2.29 5.40 30.60 0.17 -2.12 16 3 C -0.09 -1.84 1.95 -10.79 -0.02 -1.86 16 4 H 0.05 1.42 7.21 -2.39 -0.02 1.40 16 5 C -0.11 -1.84 4.96 30.59 0.15 -1.69 16 6 C -0.12 -2.11 5.67 30.59 0.17 -1.93 16 7 C -0.14 -2.48 5.52 30.60 0.17 -2.31 16 8 C 0.09 1.96 2.86 44.91 0.13 2.09 16 9 H 0.07 1.67 7.80 -2.39 -0.02 1.65 16 10 N -0.69 -20.46 5.71 -491.57 -2.81 -23.27 16 11 C 0.08 2.27 5.87 86.30 0.51 2.77 16 12 C 0.06 2.12 6.22 71.98 0.45 2.57 16 13 O -0.40 -20.38 10.27 -148.98 -1.53 -21.91 16 14 C 0.21 12.25 5.69 71.24 0.41 12.65 16 15 C -0.55 -33.87 9.43 25.60 0.24 -33.63 16 16 H 0.06 3.64 7.81 -2.91 -0.02 3.62 16 17 C 0.01 0.42 5.46 84.65 0.46 0.89 16 18 N -0.93 -57.31 13.29 21.45 0.28 -57.03 16 19 Si 0.98 45.62 29.54 68.60 2.03 47.65 16 20 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 21 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 22 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 23 C -0.10 -2.16 4.92 30.59 0.15 -2.01 16 24 H 0.06 1.04 6.57 -2.39 -0.02 1.03 16 25 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 26 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.05 1.08 8.14 -2.39 -0.02 1.07 16 29 H 0.07 1.05 8.14 -2.39 -0.02 1.04 16 30 H 0.07 1.08 6.56 -2.39 -0.02 1.07 16 31 H 0.05 0.99 6.26 -2.39 -0.01 0.97 16 32 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.06 1.04 7.45 -2.39 -0.02 1.02 16 34 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.34 9.87 5.56 -89.69 -0.50 9.37 16 36 H 0.07 2.20 8.05 -2.39 -0.02 2.18 16 37 H 0.06 1.52 7.44 -2.38 -0.02 1.51 16 38 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 40 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 41 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 42 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 43 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -67.84 338.61 2.09 -65.76 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: 0.44 Total: 15.54 kcal Atomic # 6 Polarization: -30.41 SS G_CDS: 3.68 Total: -26.73 kcal Atomic # 7 Polarization: -77.77 SS G_CDS: -2.52 Total: -80.30 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: -1.53 Total: -21.91 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -67.84 2.09 -65.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395455617.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.475 kcal (2) G-P(sol) polarization free energy of solvation -67.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds