Wall clock time and date at job start Mon Mar 30 2020 07:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52996 * 109.47153 * 2 1 4 4 H 1.08996 * 109.47452 * 54.99933 * 3 2 1 5 5 C 1.53002 * 109.46972 * 294.99473 * 3 2 1 6 6 C 1.52996 * 109.46972 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.47131 * 60.00459 * 6 5 3 8 8 C 1.52999 * 109.46991 * 299.99311 * 7 6 5 9 9 H 1.08993 * 109.47839 * 300.00447 * 8 7 6 10 10 N 1.46898 * 109.47222 * 179.97438 * 8 7 6 11 11 C 1.46900 * 111.00182 * 85.00080 * 10 8 7 12 12 C 1.52991 * 109.47562 * 180.02562 * 11 10 8 13 13 O 1.42900 * 109.47453 * 64.99906 * 12 11 10 14 14 C 1.42893 * 114.00285 * 180.02562 * 13 12 11 15 15 C 1.50707 * 109.47189 * 180.02562 * 14 13 12 16 16 H 1.08000 * 119.99759 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99772 * 180.02562 * 15 14 13 18 18 N 1.31508 * 120.00361 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99629 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47336 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47304 * 119.99956 * 19 17 15 22 22 H 1.48496 * 109.47105 * 239.99848 * 19 17 15 23 23 C 1.52997 * 109.47131 * 174.99932 * 3 2 1 24 24 H 1.08997 * 109.47659 * 299.99976 * 1 2 3 25 25 H 1.09007 * 109.47202 * 60.00401 * 1 2 3 26 26 H 1.09002 * 109.47186 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47417 * 239.99564 * 2 1 3 28 28 H 1.09007 * 109.47202 * 119.99599 * 2 1 3 29 29 H 1.08996 * 109.47407 * 300.00487 * 5 3 2 30 30 H 1.09000 * 109.46986 * 60.00258 * 5 3 2 31 31 H 1.09001 * 109.46993 * 180.02562 * 6 5 3 32 32 H 1.09000 * 109.47380 * 299.99696 * 6 5 3 33 33 H 1.09002 * 109.47153 * 179.97438 * 7 6 5 34 34 H 1.08993 * 109.47194 * 60.00154 * 7 6 5 35 35 H 1.00903 * 110.99858 * 321.05071 * 10 8 7 36 36 H 1.09002 * 109.47349 * 300.00525 * 11 10 8 37 37 H 1.09001 * 109.46826 * 59.99872 * 11 10 8 38 38 H 1.08996 * 109.47259 * 185.00647 * 12 11 10 39 39 H 1.09005 * 109.47043 * 304.99891 * 12 11 10 40 40 H 1.09002 * 109.47340 * 299.99917 * 14 13 12 41 41 H 1.09001 * 109.47396 * 60.00340 * 14 13 12 42 42 H 0.96999 * 120.00174 * 179.97438 * 18 17 15 43 43 H 1.09001 * 109.47502 * 60.00153 * 23 3 2 44 44 H 1.09001 * 109.47289 * 299.99950 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 1.6352 2.1264 -1.3074 6 6 2.1447 3.5691 -1.3072 7 6 3.6695 3.5715 -1.1811 8 6 4.0742 2.8876 0.1263 9 1 3.6392 3.4263 0.9681 10 7 5.5382 2.8893 0.2471 11 6 6.0167 4.1492 0.8315 12 6 7.5424 4.1139 0.9406 13 8 8.1126 4.0639 -0.3688 14 6 9.5410 4.0272 -0.3797 15 6 10.0313 3.9768 -1.8039 16 1 9.3229 3.9728 -2.6190 17 6 11.3843 3.9347 -2.0660 18 7 12.2469 3.9391 -1.0733 19 14 11.9921 3.8716 -3.8312 20 1 10.8298 3.8774 -4.7554 21 1 12.8462 5.0555 -4.1034 22 1 12.7835 2.6322 -4.0382 23 6 3.5647 1.4443 0.1257 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 2.0698 1.5874 -2.1492 30 1 0.5489 2.1252 -1.3970 31 1 1.8560 4.0565 -2.2384 32 1 1.7096 4.1079 -0.4655 33 1 4.0325 4.5993 -1.1814 34 1 4.1045 3.0328 -2.0229 35 1 5.9749 2.7161 -0.6459 36 1 5.7176 4.9819 0.1949 37 1 5.5840 4.2769 1.8238 38 1 7.8907 5.0096 1.4547 39 1 7.8460 3.2309 1.5030 40 1 9.9312 4.9210 0.1071 41 1 9.8858 3.1422 0.1551 42 1 13.1988 3.9091 -1.2578 43 1 3.9994 0.9053 -0.7161 44 1 3.8531 0.9570 1.0571 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395455619.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:36:58 Heat of formation + Delta-G solvation = -90.538553 kcal Electronic energy + Delta-G solvation = -19154.173715 eV Core-core repulsion = 16297.603224 eV Total energy + Delta-G solvation = -2856.570491 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.31287 -37.01696 -35.37645 -33.22146 -32.59283 -30.49492 -29.14948 -27.40768 -26.18597 -23.84258 -22.35150 -22.13970 -21.42579 -20.49358 -19.82194 -16.44112 -15.84084 -15.63546 -15.37556 -15.04367 -14.62697 -14.48701 -14.07940 -13.83640 -13.64232 -13.45998 -13.08196 -12.82972 -12.36265 -12.26893 -11.74465 -11.69080 -11.50435 -11.33476 -11.25651 -11.09557 -10.86134 -10.79494 -10.75436 -10.60426 -10.52819 -10.17269 -10.14938 -9.90885 -9.08050 -8.81418 -8.15598 -8.08740 -6.10178 -4.11807 3.29381 3.35775 3.42021 4.24969 4.35787 4.55232 4.67263 4.88005 4.92772 4.97855 5.01989 5.12350 5.21360 5.26352 5.34238 5.48223 5.50925 5.54009 5.54973 5.58614 5.66127 5.75977 5.80337 5.84453 5.94267 5.95015 6.05079 6.08501 6.13209 6.17746 6.22014 6.26268 6.35826 6.41543 6.44885 7.13192 7.32936 7.45645 7.73094 7.80170 8.16605 8.59490 9.01850 9.53071 11.01443 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.029700 B = 0.003437 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.523814 B = 8145.109271 C = 8438.006260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.086 4.086 4 H 0.067 0.933 5 C -0.115 4.115 6 C -0.114 4.114 7 C -0.150 4.150 8 C 0.089 3.911 9 H 0.070 0.930 10 N -0.684 5.684 11 C 0.066 3.934 12 C 0.062 3.938 13 O -0.399 6.399 14 C 0.197 3.803 15 C -0.513 4.513 16 H 0.066 0.934 17 C 0.055 3.945 18 N -0.898 5.898 19 Si 0.907 3.093 20 H -0.271 1.271 21 H -0.283 1.283 22 H -0.282 1.282 23 C -0.101 4.101 24 H 0.052 0.948 25 H 0.055 0.945 26 H 0.050 0.950 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.355 0.645 36 H 0.033 0.967 37 H 0.073 0.927 38 H 0.039 0.961 39 H 0.046 0.954 40 H 0.004 0.996 41 H 0.006 0.994 42 H 0.263 0.737 43 H 0.062 0.938 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.174 -3.972 3.052 22.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.105 4.105 4 H 0.085 0.915 5 C -0.153 4.153 6 C -0.153 4.153 7 C -0.189 4.189 8 C -0.022 4.022 9 H 0.089 0.911 10 N -0.315 5.315 11 C -0.063 4.063 12 C -0.016 4.016 13 O -0.319 6.319 14 C 0.123 3.877 15 C -0.552 4.552 16 H 0.084 0.916 17 C -0.146 4.146 18 N -0.538 5.538 19 Si 0.734 3.266 20 H -0.195 1.195 21 H -0.209 1.209 22 H -0.208 1.208 23 C -0.139 4.139 24 H 0.071 0.929 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.175 0.825 36 H 0.051 0.949 37 H 0.091 0.909 38 H 0.057 0.943 39 H 0.064 0.936 40 H 0.021 0.979 41 H 0.024 0.976 42 H 0.073 0.927 43 H 0.081 0.919 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -22.055 -4.309 3.526 22.747 hybrid contribution 0.588 0.669 -1.315 1.588 sum -21.467 -3.640 2.211 21.885 Atomic orbital electron populations 1.21823 0.96184 1.01299 1.01752 1.21558 0.95549 0.96538 1.02069 1.21180 0.95838 0.95637 0.97874 0.91461 1.21645 1.00219 0.95707 0.97686 1.21464 0.95654 0.96720 1.01420 1.22291 0.96122 1.01238 0.99293 1.21563 0.88511 0.95932 0.96146 0.91131 1.60589 1.04505 1.34128 1.32294 1.21962 0.94558 0.90829 0.98961 1.22300 0.92161 0.99427 0.87732 1.87783 1.24325 1.95115 1.24673 1.20175 0.74334 0.95345 0.97896 1.21094 0.91639 1.50554 0.91872 0.91594 1.24954 0.96375 0.95203 0.98037 1.69971 1.02100 1.50631 1.31062 0.86292 0.78745 0.77627 0.83893 1.19514 1.20876 1.20817 1.21556 0.93608 0.96231 1.02525 0.92927 0.92589 0.93066 0.92012 0.91992 0.92007 0.92108 0.92297 0.92281 0.92081 0.91607 0.82489 0.94851 0.90891 0.94279 0.93610 0.97864 0.97629 0.92715 0.91900 0.91438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.67 37.15 0.36 -0.74 16 2 C -0.12 -0.98 5.40 -26.74 -0.14 -1.13 16 3 C -0.09 -0.78 2.19 -90.62 -0.20 -0.98 16 4 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 5 C -0.12 -1.02 4.96 -26.73 -0.13 -1.16 16 6 C -0.11 -1.10 5.92 -26.73 -0.16 -1.26 16 7 C -0.15 -1.75 5.17 -26.73 -0.14 -1.89 16 8 C 0.09 1.08 2.47 -67.68 -0.17 0.91 16 9 H 0.07 0.84 7.80 -51.93 -0.41 0.43 16 10 N -0.68 -10.36 6.25 -106.70 -0.67 -11.02 16 11 C 0.07 1.03 5.90 -3.83 -0.02 1.00 16 12 C 0.06 1.18 6.28 37.15 0.23 1.41 16 13 O -0.40 -9.64 9.84 -35.23 -0.35 -9.99 16 14 C 0.20 5.47 5.69 36.01 0.20 5.68 16 15 C -0.51 -15.24 9.43 -34.44 -0.32 -15.56 16 16 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -27.16 13.29 55.43 0.74 -26.42 16 19 Si 0.91 21.98 29.54 -169.99 -5.02 16.96 16 20 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 23 C -0.10 -1.11 4.81 -26.70 -0.13 -1.24 16 24 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 0.39 6.57 -51.93 -0.34 0.05 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.48 6.56 -51.93 -0.34 0.14 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.77 7.46 -51.93 -0.39 0.38 16 34 H 0.07 0.82 8.13 -51.93 -0.42 0.40 16 35 H 0.36 6.03 8.03 -39.29 -0.32 5.72 16 36 H 0.03 0.52 7.44 -51.93 -0.39 0.14 16 37 H 0.07 0.97 8.06 -51.93 -0.42 0.56 16 38 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 16 41 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 42 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 43 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 343.74 15.07 5.18 5.18 Total: -1.00 -30.18 343.74 -9.31 -39.49 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -8.48 Total: -0.76 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: -0.71 Total: -13.44 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: 0.07 Total: -37.45 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: -0.35 Total: -9.99 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.18 -9.31 -39.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395455619.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.045 kcal (2) G-P(sol) polarization free energy of solvation -30.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds