Wall clock time and date at job start Mon Mar 30 2020 07:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52996 * 109.47153 * 2 1 4 4 H 1.08996 * 109.47452 * 54.99933 * 3 2 1 5 5 C 1.53002 * 109.46972 * 294.99473 * 3 2 1 6 6 C 1.52996 * 109.46972 * 179.97438 * 5 3 2 7 7 C 1.52997 * 109.47131 * 60.00459 * 6 5 3 8 8 C 1.52999 * 109.46991 * 299.99311 * 7 6 5 9 9 H 1.08993 * 109.47839 * 300.00447 * 8 7 6 10 10 N 1.46898 * 109.47222 * 179.97438 * 8 7 6 11 11 C 1.46900 * 111.00182 * 85.00080 * 10 8 7 12 12 C 1.52991 * 109.47562 * 180.02562 * 11 10 8 13 13 O 1.42900 * 109.47453 * 64.99906 * 12 11 10 14 14 C 1.42893 * 114.00285 * 180.02562 * 13 12 11 15 15 C 1.50707 * 109.47189 * 180.02562 * 14 13 12 16 16 H 1.08000 * 119.99759 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99772 * 180.02562 * 15 14 13 18 18 N 1.31508 * 120.00361 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99629 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47336 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47304 * 119.99956 * 19 17 15 22 22 H 1.48496 * 109.47105 * 239.99848 * 19 17 15 23 23 C 1.52997 * 109.47131 * 174.99932 * 3 2 1 24 24 H 1.08997 * 109.47659 * 299.99976 * 1 2 3 25 25 H 1.09007 * 109.47202 * 60.00401 * 1 2 3 26 26 H 1.09002 * 109.47186 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47417 * 239.99564 * 2 1 3 28 28 H 1.09007 * 109.47202 * 119.99599 * 2 1 3 29 29 H 1.08996 * 109.47407 * 300.00487 * 5 3 2 30 30 H 1.09000 * 109.46986 * 60.00258 * 5 3 2 31 31 H 1.09001 * 109.46993 * 180.02562 * 6 5 3 32 32 H 1.09000 * 109.47380 * 299.99696 * 6 5 3 33 33 H 1.09002 * 109.47153 * 179.97438 * 7 6 5 34 34 H 1.08993 * 109.47194 * 60.00154 * 7 6 5 35 35 H 1.00903 * 110.99858 * 321.05071 * 10 8 7 36 36 H 1.09002 * 109.47349 * 300.00525 * 11 10 8 37 37 H 1.09001 * 109.46826 * 59.99872 * 11 10 8 38 38 H 1.08996 * 109.47259 * 185.00647 * 12 11 10 39 39 H 1.09005 * 109.47043 * 304.99891 * 12 11 10 40 40 H 1.09002 * 109.47340 * 299.99917 * 14 13 12 41 41 H 1.09001 * 109.47396 * 60.00340 * 14 13 12 42 42 H 0.96999 * 120.00174 * 179.97438 * 18 17 15 43 43 H 1.09001 * 109.47502 * 60.00153 * 23 3 2 44 44 H 1.09001 * 109.47289 * 299.99950 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 1.6352 2.1264 -1.3074 6 6 2.1447 3.5691 -1.3072 7 6 3.6695 3.5715 -1.1811 8 6 4.0742 2.8876 0.1263 9 1 3.6392 3.4263 0.9681 10 7 5.5382 2.8893 0.2471 11 6 6.0167 4.1492 0.8315 12 6 7.5424 4.1139 0.9406 13 8 8.1126 4.0639 -0.3688 14 6 9.5410 4.0272 -0.3797 15 6 10.0313 3.9768 -1.8039 16 1 9.3229 3.9728 -2.6190 17 6 11.3843 3.9347 -2.0660 18 7 12.2469 3.9391 -1.0733 19 14 11.9921 3.8716 -3.8312 20 1 10.8298 3.8774 -4.7554 21 1 12.8462 5.0555 -4.1034 22 1 12.7835 2.6322 -4.0382 23 6 3.5647 1.4443 0.1257 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 2.0698 1.5874 -2.1492 30 1 0.5489 2.1252 -1.3970 31 1 1.8560 4.0565 -2.2384 32 1 1.7096 4.1079 -0.4655 33 1 4.0325 4.5993 -1.1814 34 1 4.1045 3.0328 -2.0229 35 1 5.9749 2.7161 -0.6459 36 1 5.7176 4.9819 0.1949 37 1 5.5840 4.2769 1.8238 38 1 7.8907 5.0096 1.4547 39 1 7.8460 3.2309 1.5030 40 1 9.9312 4.9210 0.1071 41 1 9.8858 3.1422 0.1551 42 1 13.1988 3.9091 -1.2578 43 1 3.9994 0.9053 -0.7161 44 1 3.8531 0.9570 1.0571 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395455619.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:36:58 Heat of formation + Delta-G solvation = -108.748954 kcal Electronic energy + Delta-G solvation = -19154.963377 eV Core-core repulsion = 16297.603224 eV Total energy + Delta-G solvation = -2857.360153 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.22592 -38.72615 -36.55847 -34.94492 -33.96044 -31.61312 -30.15960 -29.19404 -27.62882 -24.62934 -24.50768 -23.01240 -22.79417 -21.37953 -20.64405 -18.65502 -17.50134 -16.97240 -16.67102 -16.40025 -15.91535 -15.69433 -15.31832 -15.16566 -14.63662 -14.49432 -14.31814 -13.86540 -13.73710 -13.30823 -13.28594 -13.00808 -12.79849 -12.64967 -12.48977 -12.37429 -12.23351 -12.08552 -11.94868 -11.85842 -11.59695 -11.33008 -11.27930 -10.99261 -10.95806 -10.85314 -10.24396 -9.26666 -8.33526 -6.46047 1.39107 1.40713 1.55293 2.33642 3.00311 3.15661 3.22147 3.73354 3.85956 4.02796 4.12533 4.20357 4.25309 4.34117 4.36209 4.49527 4.54818 4.56936 4.65618 4.66217 4.77098 4.79125 4.82406 4.83374 4.93989 4.96926 5.09260 5.13713 5.16264 5.19872 5.21997 5.29144 5.33697 5.37160 5.45152 5.53523 5.56563 5.64357 5.94358 6.18616 6.42057 6.51967 6.80383 7.25992 8.79185 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.029700 B = 0.003437 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.523814 B = 8145.109271 C = 8438.006260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C -0.080 4.080 4 H 0.074 0.926 5 C -0.112 4.112 6 C -0.110 4.110 7 C -0.147 4.147 8 C 0.090 3.910 9 H 0.080 0.920 10 N -0.694 5.694 11 C 0.076 3.924 12 C 0.054 3.946 13 O -0.408 6.408 14 C 0.211 3.789 15 C -0.547 4.547 16 H 0.062 0.938 17 C 0.005 3.995 18 N -0.931 5.931 19 Si 0.985 3.015 20 H -0.264 1.264 21 H -0.271 1.271 22 H -0.271 1.271 23 C -0.097 4.097 24 H 0.056 0.944 25 H 0.059 0.941 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.077 0.923 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.049 0.951 34 H 0.051 0.949 35 H 0.341 0.659 36 H 0.032 0.968 37 H 0.102 0.898 38 H 0.048 0.952 39 H 0.042 0.958 40 H -0.015 1.015 41 H -0.016 1.016 42 H 0.271 0.729 43 H 0.049 0.951 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.613 -3.978 2.414 24.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.099 4.099 4 H 0.092 0.908 5 C -0.150 4.150 6 C -0.148 4.148 7 C -0.186 4.186 8 C -0.019 4.019 9 H 0.099 0.901 10 N -0.324 5.324 11 C -0.053 4.053 12 C -0.023 4.023 13 O -0.328 6.328 14 C 0.136 3.864 15 C -0.584 4.584 16 H 0.080 0.920 17 C -0.194 4.194 18 N -0.570 5.570 19 Si 0.807 3.193 20 H -0.188 1.188 21 H -0.196 1.196 22 H -0.196 1.196 23 C -0.135 4.135 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.159 0.841 36 H 0.050 0.950 37 H 0.121 0.879 38 H 0.066 0.934 39 H 0.060 0.940 40 H 0.003 0.997 41 H 0.002 0.998 42 H 0.080 0.920 43 H 0.068 0.932 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -23.524 -4.314 2.914 24.093 hybrid contribution 1.011 0.665 -1.024 1.586 sum -22.512 -3.649 1.889 22.884 Atomic orbital electron populations 1.21803 0.95049 1.01829 1.02137 1.21541 0.96506 0.95798 1.01794 1.21133 0.94096 0.96402 0.98268 0.90784 1.21630 1.01128 0.94989 0.97213 1.21445 0.93773 0.97449 1.02161 1.22228 0.97835 1.00123 0.98416 1.21642 0.86622 0.96904 0.96751 0.90145 1.60648 1.06371 1.33884 1.31491 1.21920 0.91756 0.91039 1.00585 1.22613 0.94480 0.99650 0.85577 1.87751 1.22155 1.95099 1.27817 1.19795 0.76319 0.93337 0.96947 1.21410 0.92482 1.52065 0.92474 0.92003 1.25987 0.96208 0.93935 1.03234 1.70076 1.02771 1.50523 1.33678 0.85116 0.78302 0.78290 0.77569 1.18794 1.19628 1.19628 1.21517 0.95182 0.95141 1.01651 0.92496 0.92205 0.92547 0.92496 0.92152 0.92727 0.90483 0.91728 0.91305 0.93202 0.93019 0.84067 0.94977 0.87949 0.93410 0.93977 0.99739 0.99815 0.92019 0.93174 0.92016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.67 71.98 0.70 -1.14 16 2 C -0.12 -1.78 5.40 30.59 0.17 -1.61 16 3 C -0.08 -1.31 2.19 -10.79 -0.02 -1.34 16 4 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 5 C -0.11 -1.78 4.96 30.59 0.15 -1.63 16 6 C -0.11 -1.92 5.92 30.59 0.18 -1.74 16 7 C -0.15 -3.34 5.17 30.59 0.16 -3.18 16 8 C 0.09 2.12 2.47 44.94 0.11 2.23 16 9 H 0.08 1.75 7.80 -2.39 -0.02 1.73 16 10 N -0.69 -20.92 6.25 -491.50 -3.07 -23.99 16 11 C 0.08 2.30 5.90 86.30 0.51 2.81 16 12 C 0.05 2.08 6.28 71.98 0.45 2.53 16 13 O -0.41 -20.24 9.84 -148.98 -1.47 -21.71 16 14 C 0.21 12.15 5.69 71.24 0.41 12.55 16 15 C -0.55 -33.07 9.43 25.60 0.24 -32.83 16 16 H 0.06 3.70 7.81 -2.91 -0.02 3.67 16 17 C 0.00 0.28 5.46 84.66 0.46 0.74 16 18 N -0.93 -56.76 13.29 21.45 0.28 -56.47 16 19 Si 0.98 44.85 29.54 68.60 2.03 46.87 16 20 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 21 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 22 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 23 C -0.10 -2.06 4.81 30.61 0.15 -1.92 16 24 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 25 H 0.06 0.68 6.57 -2.38 -0.02 0.67 16 26 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 29 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.08 1.01 6.56 -2.39 -0.02 0.99 16 31 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.05 1.23 7.46 -2.39 -0.02 1.22 16 34 H 0.05 1.31 8.13 -2.39 -0.02 1.29 16 35 H 0.34 11.87 8.03 -89.69 -0.72 11.15 16 36 H 0.03 0.98 7.44 -2.39 -0.02 0.97 16 37 H 0.10 2.52 8.06 -2.39 -0.02 2.50 16 38 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 40 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 41 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 42 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 43 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -64.77 343.74 1.64 -63.13 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: 0.21 Total: 16.69 kcal Atomic # 6 Polarization: -28.18 SS G_CDS: 3.66 Total: -24.52 kcal Atomic # 7 Polarization: -77.68 SS G_CDS: -2.79 Total: -80.47 kcal Atomic # 8 Polarization: -20.24 SS G_CDS: -1.47 Total: -21.71 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Total: -64.77 1.64 -63.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395455619.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.618 kcal (2) G-P(sol) polarization free energy of solvation -64.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds