Wall clock time and date at job start Mon Mar 30 2020 07:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47417 * 2 1 4 4 H 1.08993 * 109.46832 * 305.00403 * 3 2 1 5 5 C 1.53001 * 109.46490 * 65.00372 * 3 2 1 6 6 C 1.53005 * 109.46490 * 180.02562 * 5 3 2 7 7 C 1.52994 * 109.47090 * 299.99867 * 6 5 3 8 8 C 1.52993 * 109.47250 * 60.00224 * 7 6 5 9 9 H 1.08994 * 109.47356 * 60.00021 * 8 7 6 10 10 N 1.46904 * 109.47308 * 179.97438 * 8 7 6 11 11 C 1.46899 * 111.00029 * 275.00154 * 10 8 7 12 12 C 1.52997 * 109.47254 * 179.97438 * 11 10 8 13 13 O 1.42904 * 109.47396 * 64.99580 * 12 11 10 14 14 C 1.42896 * 114.00313 * 180.02562 * 13 12 11 15 15 C 1.50699 * 109.46851 * 180.02562 * 14 13 12 16 16 H 1.07999 * 120.00616 * 359.97438 * 15 14 13 17 17 C 1.37884 * 119.99887 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99815 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00265 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47378 * 89.99191 * 19 17 15 21 21 H 1.48498 * 109.47222 * 209.99557 * 19 17 15 22 22 H 1.48506 * 109.46855 * 329.99448 * 19 17 15 23 23 C 1.52998 * 109.47059 * 184.99862 * 3 2 1 24 24 H 1.09001 * 109.47416 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47057 * 300.00002 * 1 2 3 26 26 H 1.09006 * 109.47080 * 59.99342 * 1 2 3 27 27 H 1.09003 * 109.47057 * 239.99997 * 2 1 3 28 28 H 1.09004 * 109.47572 * 120.00495 * 2 1 3 29 29 H 1.08993 * 109.47557 * 60.00475 * 5 3 2 30 30 H 1.09002 * 109.47089 * 299.99555 * 5 3 2 31 31 H 1.09005 * 109.47110 * 179.97438 * 6 5 3 32 32 H 1.09007 * 109.47338 * 59.99961 * 6 5 3 33 33 H 1.09004 * 109.46927 * 299.99756 * 7 6 5 34 34 H 1.09001 * 109.47079 * 180.02562 * 7 6 5 35 35 H 1.00902 * 111.00190 * 151.03855 * 10 8 7 36 36 H 1.09002 * 109.47043 * 299.99792 * 11 10 8 37 37 H 1.09001 * 109.47354 * 59.99854 * 11 10 8 38 38 H 1.09001 * 109.47630 * 184.99901 * 12 11 10 39 39 H 1.09004 * 109.47346 * 305.00031 * 12 11 10 40 40 H 1.08999 * 109.46799 * 300.00326 * 14 13 12 41 41 H 1.08998 * 109.47187 * 59.99969 * 14 13 12 42 42 H 0.97003 * 120.00101 * 180.02562 * 18 17 15 43 43 H 1.09005 * 109.46987 * 60.00136 * 23 3 2 44 44 H 1.08998 * 109.47427 * 300.00639 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 1.6354 2.1264 1.3074 6 6 2.1449 3.5691 1.3072 7 6 3.6696 3.5715 1.1811 8 6 4.0743 2.8875 -0.1262 9 1 3.6394 3.4263 -0.9680 10 7 5.5383 2.8903 -0.2476 11 6 6.0157 4.1504 -0.8325 12 6 7.5414 4.1160 -0.9422 13 8 7.9297 3.0986 -1.8675 14 6 9.3430 2.9820 -2.0438 15 6 9.6366 1.8857 -3.0353 16 1 8.8253 1.3330 -3.4854 17 6 10.9413 1.5875 -3.3670 18 7 11.9294 2.2602 -2.8185 19 14 11.3055 0.2282 -4.5954 20 1 11.3487 0.7980 -5.9660 21 1 12.6169 -0.3904 -4.2749 22 1 10.2402 -0.8039 -4.5218 23 6 3.5649 1.4443 -0.1257 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5140 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 2.0700 1.5874 2.1492 30 1 0.5490 2.1252 1.3970 31 1 1.8562 4.0566 2.2384 32 1 1.7099 4.1080 0.4654 33 1 4.1046 3.0327 2.0229 34 1 4.0327 4.5992 1.1814 35 1 5.8582 2.0981 -0.7846 36 1 5.5826 4.2775 -1.8247 37 1 5.7162 4.9829 -0.1960 38 1 7.9024 5.0829 -1.2928 39 1 7.9713 3.9006 0.0360 40 1 9.7416 3.9253 -2.4170 41 1 9.8098 2.7429 -1.0883 42 1 12.8473 2.0507 -3.0521 43 1 3.8532 0.9569 -1.0571 44 1 3.9995 0.9051 0.7160 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395455621.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:37:01 Heat of formation + Delta-G solvation = -89.984750 kcal Electronic energy + Delta-G solvation = -19124.035676 eV Core-core repulsion = 16267.489200 eV Total energy + Delta-G solvation = -2856.546476 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.29493 -37.01218 -35.32474 -33.28232 -32.61178 -30.54213 -29.09507 -27.45297 -26.26190 -23.80688 -22.39155 -22.28746 -21.38778 -20.20754 -19.80064 -16.43430 -15.90123 -15.61674 -15.19720 -15.03841 -14.82726 -14.59032 -14.20997 -14.06434 -13.55073 -13.31301 -13.19816 -12.65726 -12.40766 -12.25552 -11.74796 -11.68882 -11.49806 -11.31496 -11.18146 -11.16079 -10.89978 -10.82181 -10.74050 -10.60253 -10.52462 -10.16113 -10.03083 -9.92483 -9.09361 -8.80827 -8.15798 -8.14017 -6.09886 -4.11645 3.30712 3.35657 3.40907 4.22777 4.35847 4.55119 4.58456 4.86245 4.94348 5.00369 5.06047 5.11346 5.26520 5.28665 5.30615 5.39484 5.48829 5.52031 5.58986 5.60144 5.65871 5.75887 5.78224 5.84140 5.92733 5.96895 6.03483 6.08618 6.12523 6.20785 6.22942 6.26257 6.30141 6.37636 6.47070 7.13329 7.33288 7.45826 7.73377 7.80063 8.16766 8.59686 9.01648 9.53149 11.01674 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.025464 B = 0.003620 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.335806 B = 7733.385119 C = 8671.098208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.084 4.084 4 H 0.067 0.933 5 C -0.114 4.114 6 C -0.119 4.119 7 C -0.107 4.107 8 C 0.088 3.912 9 H 0.039 0.961 10 N -0.685 5.685 11 C 0.067 3.933 12 C 0.062 3.938 13 O -0.399 6.399 14 C 0.197 3.803 15 C -0.515 4.515 16 H 0.065 0.935 17 C 0.056 3.944 18 N -0.898 5.898 19 Si 0.908 3.092 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.272 1.272 23 C -0.116 4.116 24 H 0.051 0.949 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.058 0.942 35 H 0.355 0.645 36 H 0.032 0.968 37 H 0.073 0.927 38 H 0.039 0.961 39 H 0.046 0.954 40 H 0.003 0.997 41 H 0.006 0.994 42 H 0.264 0.736 43 H 0.062 0.938 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.298 0.628 7.957 22.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.103 4.103 4 H 0.086 0.914 5 C -0.152 4.152 6 C -0.157 4.157 7 C -0.145 4.145 8 C -0.022 4.022 9 H 0.057 0.943 10 N -0.318 5.318 11 C -0.062 4.062 12 C -0.016 4.016 13 O -0.319 6.319 14 C 0.123 3.877 15 C -0.553 4.553 16 H 0.084 0.916 17 C -0.145 4.145 18 N -0.538 5.538 19 Si 0.735 3.265 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.196 1.196 23 C -0.154 4.154 24 H 0.070 0.930 25 H 0.074 0.926 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.176 0.824 36 H 0.051 0.949 37 H 0.091 0.909 38 H 0.057 0.943 39 H 0.064 0.936 40 H 0.021 0.979 41 H 0.024 0.976 42 H 0.073 0.927 43 H 0.081 0.919 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -21.103 0.724 8.498 22.761 hybrid contribution 0.375 -0.502 -1.422 1.554 sum -20.728 0.221 7.076 21.904 Atomic orbital electron populations 1.21820 0.96105 1.01349 1.01755 1.21572 0.95643 0.96456 1.02138 1.21146 0.95323 0.95777 0.98065 0.91442 1.21636 1.00219 0.95760 0.97540 1.21544 0.96132 0.96668 1.01394 1.21528 0.94438 1.00500 0.98012 1.21496 0.88207 0.95726 0.96775 0.94348 1.60484 1.08895 1.05489 1.56925 1.21975 0.94708 0.92517 0.97040 1.22299 0.93503 0.92014 0.93767 1.87783 1.27449 1.54595 1.62115 1.20167 0.75036 0.96448 0.96052 1.21058 0.92305 1.17630 1.24285 0.91637 1.24955 0.95754 0.97042 0.96784 1.69966 0.99336 1.41043 1.43423 0.86340 0.77671 0.81573 0.80922 1.20506 1.21063 1.19633 1.21773 0.94825 0.96279 1.02551 0.93015 0.92580 0.92908 0.91956 0.91954 0.91940 0.92099 0.92132 0.92367 0.91353 0.92372 0.82442 0.94941 0.90859 0.94276 0.93592 0.97871 0.97624 0.92661 0.91905 0.91025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.67 37.16 0.36 -0.78 16 2 C -0.12 -1.03 5.40 -26.73 -0.14 -1.17 16 3 C -0.08 -0.78 2.19 -90.62 -0.20 -0.98 16 4 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 5 C -0.11 -0.98 4.96 -26.73 -0.13 -1.11 16 6 C -0.12 -1.08 5.92 -26.73 -0.16 -1.24 16 7 C -0.11 -1.18 5.42 -26.74 -0.15 -1.32 16 8 C 0.09 1.09 2.49 -67.69 -0.17 0.92 16 9 H 0.04 0.49 7.80 -51.93 -0.40 0.09 16 10 N -0.69 -10.48 6.31 -106.70 -0.67 -11.16 16 11 C 0.07 1.05 5.90 -3.83 -0.02 1.03 16 12 C 0.06 1.19 6.28 37.16 0.23 1.42 16 13 O -0.40 -9.69 9.85 -35.23 -0.35 -10.04 16 14 C 0.20 5.50 5.69 36.00 0.20 5.70 16 15 C -0.51 -15.29 9.43 -34.44 -0.32 -15.62 16 16 H 0.07 1.92 7.81 -52.49 -0.41 1.51 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -27.18 13.29 55.43 0.74 -26.44 16 19 Si 0.91 21.98 29.54 -169.99 -5.02 16.96 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 22 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 23 C -0.12 -1.31 4.48 -26.71 -0.12 -1.43 16 24 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.06 0.39 6.57 -51.93 -0.34 0.05 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.47 6.57 -51.93 -0.34 0.13 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.06 0.65 7.45 -51.93 -0.39 0.27 16 35 H 0.36 6.04 7.91 -39.29 -0.31 5.73 16 36 H 0.03 0.52 8.05 -51.93 -0.42 0.10 16 37 H 0.07 1.00 7.44 -51.93 -0.39 0.61 16 38 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 16 41 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 42 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 43 H 0.06 0.75 8.12 -51.93 -0.42 0.32 16 44 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 343.61 15.07 5.18 5.18 Total: -1.00 -30.28 343.61 -9.32 -39.60 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -8.47 Total: -1.05 kcal Atomic # 6 Polarization: -12.33 SS G_CDS: -0.71 Total: -13.05 kcal Atomic # 7 Polarization: -37.66 SS G_CDS: 0.06 Total: -37.60 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: -0.35 Total: -10.04 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.28 -9.32 -39.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395455621.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.386 kcal (2) G-P(sol) polarization free energy of solvation -30.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds