Wall clock time and date at job start Mon Mar 30 2020 07:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47417 * 2 1 4 4 H 1.08993 * 109.46832 * 305.00403 * 3 2 1 5 5 C 1.53001 * 109.46490 * 65.00372 * 3 2 1 6 6 C 1.53005 * 109.46490 * 180.02562 * 5 3 2 7 7 C 1.52994 * 109.47090 * 299.99867 * 6 5 3 8 8 C 1.52993 * 109.47250 * 60.00224 * 7 6 5 9 9 H 1.08994 * 109.47356 * 60.00021 * 8 7 6 10 10 N 1.46904 * 109.47308 * 179.97438 * 8 7 6 11 11 C 1.46899 * 111.00029 * 275.00154 * 10 8 7 12 12 C 1.52997 * 109.47254 * 179.97438 * 11 10 8 13 13 O 1.42904 * 109.47396 * 64.99580 * 12 11 10 14 14 C 1.42896 * 114.00313 * 180.02562 * 13 12 11 15 15 C 1.50699 * 109.46851 * 180.02562 * 14 13 12 16 16 H 1.07999 * 120.00616 * 359.97438 * 15 14 13 17 17 C 1.37884 * 119.99887 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99815 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00265 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47378 * 89.99191 * 19 17 15 21 21 H 1.48498 * 109.47222 * 209.99557 * 19 17 15 22 22 H 1.48506 * 109.46855 * 329.99448 * 19 17 15 23 23 C 1.52998 * 109.47059 * 184.99862 * 3 2 1 24 24 H 1.09001 * 109.47416 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47057 * 300.00002 * 1 2 3 26 26 H 1.09006 * 109.47080 * 59.99342 * 1 2 3 27 27 H 1.09003 * 109.47057 * 239.99997 * 2 1 3 28 28 H 1.09004 * 109.47572 * 120.00495 * 2 1 3 29 29 H 1.08993 * 109.47557 * 60.00475 * 5 3 2 30 30 H 1.09002 * 109.47089 * 299.99555 * 5 3 2 31 31 H 1.09005 * 109.47110 * 179.97438 * 6 5 3 32 32 H 1.09007 * 109.47338 * 59.99961 * 6 5 3 33 33 H 1.09004 * 109.46927 * 299.99756 * 7 6 5 34 34 H 1.09001 * 109.47079 * 180.02562 * 7 6 5 35 35 H 1.00902 * 111.00190 * 151.03855 * 10 8 7 36 36 H 1.09002 * 109.47043 * 299.99792 * 11 10 8 37 37 H 1.09001 * 109.47354 * 59.99854 * 11 10 8 38 38 H 1.09001 * 109.47630 * 184.99901 * 12 11 10 39 39 H 1.09004 * 109.47346 * 305.00031 * 12 11 10 40 40 H 1.08999 * 109.46799 * 300.00326 * 14 13 12 41 41 H 1.08998 * 109.47187 * 59.99969 * 14 13 12 42 42 H 0.97003 * 120.00101 * 180.02562 * 18 17 15 43 43 H 1.09005 * 109.46987 * 60.00136 * 23 3 2 44 44 H 1.08998 * 109.47427 * 300.00639 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 6 1.6354 2.1264 1.3074 6 6 2.1449 3.5691 1.3072 7 6 3.6696 3.5715 1.1811 8 6 4.0743 2.8875 -0.1262 9 1 3.6394 3.4263 -0.9680 10 7 5.5383 2.8903 -0.2476 11 6 6.0157 4.1504 -0.8325 12 6 7.5414 4.1160 -0.9422 13 8 7.9297 3.0986 -1.8675 14 6 9.3430 2.9820 -2.0438 15 6 9.6366 1.8857 -3.0353 16 1 8.8253 1.3330 -3.4854 17 6 10.9413 1.5875 -3.3670 18 7 11.9294 2.2602 -2.8185 19 14 11.3055 0.2282 -4.5954 20 1 11.3487 0.7980 -5.9660 21 1 12.6169 -0.3904 -4.2749 22 1 10.2402 -0.8039 -4.5218 23 6 3.5649 1.4443 -0.1257 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5140 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 2.0700 1.5874 2.1492 30 1 0.5490 2.1252 1.3970 31 1 1.8562 4.0566 2.2384 32 1 1.7099 4.1080 0.4654 33 1 4.1046 3.0327 2.0229 34 1 4.0327 4.5992 1.1814 35 1 5.8582 2.0981 -0.7846 36 1 5.5826 4.2775 -1.8247 37 1 5.7162 4.9829 -0.1960 38 1 7.9024 5.0829 -1.2928 39 1 7.9713 3.9006 0.0360 40 1 9.7416 3.9253 -2.4170 41 1 9.8098 2.7429 -1.0883 42 1 12.8473 2.0507 -3.0521 43 1 3.8532 0.9569 -1.0571 44 1 3.9995 0.9051 0.7160 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395455621.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:37:00 Heat of formation + Delta-G solvation = -108.290473 kcal Electronic energy + Delta-G solvation = -19124.829472 eV Core-core repulsion = 16267.489200 eV Total energy + Delta-G solvation = -2857.340272 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.19944 -38.73676 -36.52781 -34.94060 -34.02144 -31.67321 -30.10758 -29.19811 -27.73192 -24.68210 -24.44873 -23.17452 -22.76007 -21.08998 -20.63955 -18.65272 -17.55673 -16.92178 -16.56530 -16.40118 -16.07137 -15.69765 -15.56493 -15.16489 -14.85258 -14.41719 -14.25521 -13.90549 -13.59522 -13.29319 -13.24958 -13.04770 -12.81642 -12.66025 -12.44339 -12.36708 -12.21575 -12.06532 -12.01704 -11.81131 -11.60782 -11.34535 -11.29535 -10.97328 -10.88812 -10.82822 -10.24919 -9.35317 -8.33268 -6.46012 1.39334 1.42389 1.54445 2.33833 3.00548 3.12291 3.20723 3.72596 3.79658 4.04122 4.16913 4.21123 4.27497 4.29737 4.38125 4.51812 4.53869 4.56778 4.60139 4.66977 4.73932 4.77525 4.82170 4.82710 4.92357 4.98187 5.07167 5.15247 5.18256 5.19600 5.22679 5.27395 5.34832 5.39629 5.43326 5.53282 5.53561 5.63835 5.94248 6.17191 6.41876 6.51636 6.79911 7.25971 8.79219 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.025464 B = 0.003620 C = 0.003228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.335806 B = 7733.385119 C = 8671.098208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C -0.079 4.079 4 H 0.067 0.933 5 C -0.111 4.111 6 C -0.115 4.115 7 C -0.103 4.103 8 C 0.088 3.912 9 H 0.038 0.962 10 N -0.695 5.695 11 C 0.077 3.923 12 C 0.055 3.945 13 O -0.409 6.409 14 C 0.211 3.789 15 C -0.549 4.549 16 H 0.062 0.938 17 C 0.005 3.995 18 N -0.931 5.931 19 Si 0.985 3.015 20 H -0.267 1.267 21 H -0.274 1.274 22 H -0.264 1.264 23 C -0.113 4.113 24 H 0.056 0.944 25 H 0.063 0.937 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.342 0.658 36 H 0.030 0.970 37 H 0.101 0.899 38 H 0.048 0.952 39 H 0.042 0.958 40 H -0.015 1.015 41 H -0.016 1.016 42 H 0.271 0.729 43 H 0.051 0.949 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.769 0.197 7.798 24.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C -0.098 4.098 4 H 0.086 0.914 5 C -0.148 4.148 6 C -0.153 4.153 7 C -0.141 4.141 8 C -0.021 4.021 9 H 0.056 0.944 10 N -0.326 5.326 11 C -0.052 4.052 12 C -0.022 4.022 13 O -0.329 6.329 14 C 0.136 3.864 15 C -0.586 4.586 16 H 0.081 0.919 17 C -0.193 4.193 18 N -0.570 5.570 19 Si 0.807 3.193 20 H -0.193 1.193 21 H -0.199 1.199 22 H -0.188 1.188 23 C -0.151 4.151 24 H 0.075 0.925 25 H 0.082 0.918 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.160 0.840 36 H 0.049 0.951 37 H 0.119 0.881 38 H 0.066 0.934 39 H 0.061 0.939 40 H 0.003 0.997 41 H 0.002 0.998 42 H 0.080 0.920 43 H 0.069 0.931 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -22.602 0.315 8.359 24.100 hybrid contribution 0.821 -0.307 -1.310 1.576 sum -21.781 0.008 7.049 22.893 Atomic orbital electron populations 1.21800 0.94909 1.01880 1.02172 1.21557 0.96663 0.95769 1.01775 1.21110 0.93556 0.96493 0.98658 0.91448 1.21623 1.01163 0.95286 0.96774 1.21524 0.94325 0.97140 1.02296 1.21502 0.96082 0.99963 0.96586 1.21596 0.86312 0.96652 0.97582 0.94437 1.60562 1.10940 1.04710 1.56408 1.21922 0.91857 0.93718 0.97706 1.22601 0.96083 0.91055 0.92491 1.87749 1.25115 1.56481 1.63525 1.19792 0.76803 0.95193 0.94573 1.21390 0.93012 1.18723 1.25501 0.91941 1.25992 0.95163 0.99569 0.98598 1.70074 0.99995 1.42460 1.44511 0.85160 0.77874 0.78048 0.78184 1.19251 1.19898 1.18810 1.21741 0.96449 0.95318 1.01595 0.92497 0.91822 0.92789 0.92679 0.92040 0.92159 0.90512 0.90776 0.91937 0.92254 0.92453 0.83951 0.95140 0.88090 0.93384 0.93924 0.99744 0.99797 0.92011 0.93056 0.91810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.67 71.98 0.70 -1.25 16 2 C -0.12 -1.91 5.40 30.60 0.17 -1.75 16 3 C -0.08 -1.37 2.19 -10.79 -0.02 -1.40 16 4 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 5 C -0.11 -1.67 4.96 30.60 0.15 -1.52 16 6 C -0.11 -1.82 5.92 30.59 0.18 -1.63 16 7 C -0.10 -2.13 5.42 30.59 0.17 -1.97 16 8 C 0.09 2.12 2.49 44.93 0.11 2.23 16 9 H 0.04 0.93 7.80 -2.39 -0.02 0.91 16 10 N -0.69 -21.24 6.31 -491.50 -3.10 -24.34 16 11 C 0.08 2.38 5.90 86.30 0.51 2.89 16 12 C 0.05 2.12 6.28 71.98 0.45 2.58 16 13 O -0.41 -20.33 9.85 -148.98 -1.47 -21.80 16 14 C 0.21 12.18 5.69 71.24 0.41 12.59 16 15 C -0.55 -33.19 9.43 25.60 0.24 -32.95 16 16 H 0.06 3.72 7.81 -2.91 -0.02 3.70 16 17 C 0.01 0.30 5.46 84.66 0.46 0.77 16 18 N -0.93 -56.78 13.29 21.45 0.28 -56.49 16 19 Si 0.98 44.78 29.54 68.60 2.03 46.80 16 20 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 21 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 22 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 23 C -0.11 -2.52 4.48 30.61 0.14 -2.38 16 24 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.06 0.73 6.57 -2.39 -0.02 0.71 16 26 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 27 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.08 0.95 6.57 -2.39 -0.02 0.93 16 31 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 32 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 33 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.06 1.19 7.45 -2.39 -0.02 1.17 16 35 H 0.34 11.91 7.91 -89.69 -0.71 11.21 16 36 H 0.03 0.95 8.05 -2.39 -0.02 0.94 16 37 H 0.10 2.57 7.44 -2.39 -0.02 2.55 16 38 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 40 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 41 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 42 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 43 H 0.05 1.24 8.12 -2.38 -0.02 1.22 16 44 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -64.86 343.61 1.62 -63.24 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: 0.22 Total: 16.39 kcal Atomic # 6 Polarization: -27.45 SS G_CDS: 3.66 Total: -23.80 kcal Atomic # 7 Polarization: -78.02 SS G_CDS: -2.82 Total: -80.83 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -1.47 Total: -21.80 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Total: -64.86 1.62 -63.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395455621.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.051 kcal (2) G-P(sol) polarization free energy of solvation -64.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds