Wall clock time and date at job start Mon Mar 30 2020 07:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47457 * 2 1 4 4 H 1.08996 * 109.47575 * 305.00546 * 3 2 1 5 5 C 1.53002 * 109.46925 * 65.00002 * 3 2 1 6 6 C 1.52997 * 109.47415 * 180.02562 * 5 3 2 7 7 C 1.53006 * 109.47164 * 300.00027 * 6 5 3 8 8 C 1.52999 * 109.46626 * 59.99702 * 7 6 5 9 9 H 1.09002 * 109.46719 * 180.02562 * 8 7 6 10 10 N 1.46898 * 109.47222 * 60.00385 * 8 7 6 11 11 C 1.46900 * 111.00190 * 84.99608 * 10 8 7 12 12 C 1.52999 * 109.47165 * 180.02562 * 11 10 8 13 13 O 1.42901 * 109.47131 * 65.00000 * 12 11 10 14 14 C 1.42901 * 113.99981 * 179.97438 * 13 12 11 15 15 C 1.50692 * 109.47253 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00463 * 0.02562 * 15 14 13 17 17 C 1.37879 * 120.00084 * 180.02562 * 15 14 13 18 18 N 1.31512 * 120.00253 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 120.00022 * 180.02562 * 17 15 14 20 20 H 1.48491 * 109.47324 * 89.99766 * 19 17 15 21 21 H 1.48498 * 109.46804 * 209.99940 * 19 17 15 22 22 H 1.48503 * 109.46735 * 329.99661 * 19 17 15 23 23 C 1.52996 * 109.47577 * 184.99976 * 3 2 1 24 24 H 1.08994 * 109.47015 * 299.99451 * 1 2 3 25 25 H 1.09001 * 109.47187 * 59.99636 * 1 2 3 26 26 H 1.09004 * 109.47198 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.47277 * 240.00585 * 2 1 3 28 28 H 1.08996 * 109.47235 * 120.00840 * 2 1 3 29 29 H 1.09000 * 109.46986 * 60.00086 * 5 3 2 30 30 H 1.09001 * 109.47601 * 300.00809 * 5 3 2 31 31 H 1.09001 * 109.46922 * 180.02562 * 6 5 3 32 32 H 1.09000 * 109.47140 * 59.99976 * 6 5 3 33 33 H 1.08993 * 109.46955 * 180.02562 * 7 6 5 34 34 H 1.09000 * 109.47050 * 300.00004 * 7 6 5 35 35 H 1.00898 * 111.00130 * 321.04251 * 10 8 7 36 36 H 1.09005 * 109.46934 * 299.99903 * 11 10 8 37 37 H 1.09002 * 109.47391 * 60.00006 * 11 10 8 38 38 H 1.09006 * 109.46701 * 184.99782 * 12 11 10 39 39 H 1.08992 * 109.47362 * 304.99728 * 12 11 10 40 40 H 1.09005 * 109.47114 * 300.00081 * 14 13 12 41 41 H 1.09000 * 109.46938 * 60.00008 * 14 13 12 42 42 H 0.97000 * 120.00400 * 179.97438 * 18 17 15 43 43 H 1.09000 * 109.47054 * 300.00355 * 23 3 2 44 44 H 1.09001 * 109.46997 * 60.00088 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 1.6353 2.1265 1.3074 6 6 2.1448 3.5691 1.3072 7 6 3.6696 3.5715 1.1812 8 6 4.0743 2.8875 -0.1261 9 1 5.1606 2.8887 -0.2157 10 7 3.4881 3.6136 -1.2606 11 6 4.3400 4.7416 -1.6605 12 6 3.6977 5.4722 -2.8414 13 8 2.4638 6.0598 -2.4239 14 6 1.7795 6.7707 -3.4576 15 6 0.4987 7.3449 -2.9093 16 1 0.2338 7.1835 -1.8747 17 6 -0.3351 8.0763 -3.7282 18 7 -0.0125 8.2733 -4.9879 19 14 -1.9226 8.7886 -3.0483 20 1 -1.6649 10.1492 -2.5122 21 1 -2.9342 8.8672 -4.1326 22 1 -2.4305 7.9156 -1.9597 23 6 3.5648 1.4443 -0.1257 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 2.0699 1.5874 2.1492 30 1 0.5490 2.1251 1.3971 31 1 1.8568 4.0562 2.2389 32 1 1.7098 4.1080 0.4655 33 1 4.0326 4.5992 1.1816 34 1 4.1046 3.0326 2.0230 35 1 2.5527 3.9253 -1.0460 36 1 4.4477 5.4305 -0.8226 37 1 5.3218 4.3695 -1.9534 38 1 4.3709 6.2533 -3.1949 39 1 3.5083 4.7636 -3.6476 40 1 2.4130 7.5788 -3.8236 41 1 1.5503 6.0892 -4.2768 42 1 -0.5993 8.7876 -5.5642 43 1 3.9994 0.9052 0.7161 44 1 3.8532 0.9570 -1.0571 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000395455622.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:37:04 Heat of formation + Delta-G solvation = -86.146424 kcal Electronic energy + Delta-G solvation = -19759.021623 eV Core-core repulsion = 16902.641589 eV Total energy + Delta-G solvation = -2856.380034 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.48614 -36.89903 -35.12664 -33.00270 -32.44522 -30.48795 -28.96609 -27.54412 -26.27144 -23.74272 -22.42423 -22.27560 -21.39391 -20.58127 -18.88768 -16.47157 -15.97130 -15.58222 -15.21759 -14.93028 -14.87498 -14.38352 -14.05994 -13.81502 -13.48893 -13.15895 -12.99938 -12.56117 -12.23791 -12.15732 -11.86886 -11.62866 -11.53394 -11.35913 -11.16522 -10.99864 -10.82264 -10.79149 -10.68276 -10.54826 -10.24684 -10.03628 -9.94935 -9.80772 -9.09429 -8.80765 -8.15275 -8.06835 -6.09909 -4.11610 3.30387 3.35458 3.40533 4.35619 4.44601 4.70337 4.73945 4.87499 4.97883 5.13413 5.14174 5.26582 5.27462 5.40402 5.51549 5.52288 5.58294 5.62523 5.69148 5.70661 5.80763 5.82073 5.90519 5.96831 6.04270 6.08984 6.11742 6.19275 6.24090 6.27486 6.31462 6.38759 6.42628 6.48310 6.62881 7.13442 7.36017 7.45918 7.77997 7.80134 8.16799 8.59771 9.01610 9.53216 11.01630 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.018701 B = 0.004906 C = 0.004344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.902025 B = 5705.946643 C = 6443.597972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.117 4.117 3 C -0.089 4.089 4 H 0.081 0.919 5 C -0.112 4.112 6 C -0.125 4.125 7 C -0.148 4.148 8 C 0.086 3.914 9 H 0.071 0.929 10 N -0.681 5.681 11 C 0.065 3.935 12 C 0.062 3.938 13 O -0.399 6.399 14 C 0.197 3.803 15 C -0.514 4.514 16 H 0.065 0.935 17 C 0.057 3.943 18 N -0.898 5.898 19 Si 0.906 3.094 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.272 1.272 23 C -0.098 4.098 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.048 0.952 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.356 0.644 36 H 0.032 0.968 37 H 0.073 0.927 38 H 0.039 0.961 39 H 0.046 0.954 40 H 0.003 0.997 41 H 0.006 0.994 42 H 0.264 0.736 43 H 0.057 0.943 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.819 -14.143 11.168 19.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.154 4.154 3 C -0.108 4.108 4 H 0.100 0.900 5 C -0.150 4.150 6 C -0.162 4.162 7 C -0.187 4.187 8 C -0.025 4.025 9 H 0.089 0.911 10 N -0.316 5.316 11 C -0.065 4.065 12 C -0.016 4.016 13 O -0.319 6.319 14 C 0.123 3.877 15 C -0.552 4.552 16 H 0.083 0.917 17 C -0.144 4.144 18 N -0.537 5.537 19 Si 0.734 3.266 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.196 1.196 23 C -0.136 4.136 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.179 0.821 36 H 0.051 0.949 37 H 0.091 0.909 38 H 0.057 0.943 39 H 0.064 0.936 40 H 0.021 0.979 41 H 0.024 0.976 42 H 0.073 0.927 43 H 0.075 0.925 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.926 -14.486 10.701 19.295 hybrid contribution -0.835 1.186 0.633 1.583 sum 6.090 -13.299 11.334 18.505 Atomic orbital electron populations 1.21829 0.96088 1.01093 1.02210 1.21540 0.95795 0.96700 1.01386 1.21174 0.95652 0.95554 0.98416 0.90019 1.21617 1.00548 0.95448 0.97373 1.21551 0.95444 0.97034 1.02213 1.22173 0.96716 1.00893 0.98917 1.21541 0.98293 0.93980 0.88657 0.91110 1.60680 1.06905 1.26850 1.37161 1.21973 0.96015 0.91424 0.97062 1.22303 0.88028 0.95359 0.95933 1.87783 1.33271 1.71306 1.39555 1.20165 0.91300 0.90059 0.86177 1.21044 1.04008 1.32542 0.97608 0.91672 1.24940 0.98590 0.96169 0.94750 1.69961 1.38031 1.40504 1.05244 0.86361 0.82323 0.79378 0.78579 1.20506 1.21062 1.19642 1.21549 0.95342 0.95424 1.01273 0.92617 0.92444 0.93296 0.92177 0.92616 0.92597 0.91923 0.92178 0.91062 0.92183 0.92039 0.82097 0.94925 0.90899 0.94312 0.93626 0.97887 0.97646 0.92671 0.92473 0.91553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.67 37.16 0.36 -1.18 16 2 C -0.12 -1.17 5.40 -26.74 -0.14 -1.31 16 3 C -0.09 -1.01 1.95 -90.62 -0.18 -1.19 16 4 H 0.08 1.12 7.21 -51.93 -0.37 0.75 16 5 C -0.11 -1.24 4.96 -26.73 -0.13 -1.37 16 6 C -0.12 -1.54 5.67 -26.73 -0.15 -1.69 16 7 C -0.15 -1.73 5.52 -26.73 -0.15 -1.88 16 8 C 0.09 1.04 2.85 -67.69 -0.19 0.85 16 9 H 0.07 0.81 7.80 -51.93 -0.41 0.41 16 10 N -0.68 -10.21 5.77 -106.70 -0.62 -10.83 16 11 C 0.06 1.00 5.90 -3.82 -0.02 0.97 16 12 C 0.06 1.17 6.28 37.16 0.23 1.41 16 13 O -0.40 -9.60 9.85 -35.23 -0.35 -9.95 16 14 C 0.20 5.46 5.69 36.00 0.20 5.67 16 15 C -0.51 -15.17 9.43 -34.44 -0.32 -15.50 16 16 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 18 N -0.90 -27.06 13.29 55.43 0.74 -26.33 16 19 Si 0.91 21.92 29.54 -169.99 -5.02 16.90 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 23 C -0.10 -1.08 4.92 -26.71 -0.13 -1.21 16 24 H 0.05 0.54 6.56 -51.93 -0.34 0.20 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.69 6.57 -51.93 -0.34 0.35 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 1.05 6.26 -51.93 -0.32 0.73 16 33 H 0.06 0.76 7.45 -51.93 -0.39 0.37 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.36 6.01 5.12 -39.29 -0.20 5.81 16 36 H 0.03 0.51 7.44 -51.93 -0.39 0.13 16 37 H 0.07 0.96 8.06 -51.93 -0.42 0.54 16 38 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.00 0.10 8.14 -51.93 -0.42 -0.33 16 41 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 42 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 337.89 15.07 5.09 5.09 Total: -1.00 -29.92 337.89 -9.10 -39.02 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -8.22 Total: 0.98 kcal Atomic # 6 Polarization: -14.16 SS G_CDS: -0.72 Total: -14.89 kcal Atomic # 7 Polarization: -37.28 SS G_CDS: 0.12 Total: -37.15 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: -0.35 Total: -9.95 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.92 -9.10 -39.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395455622.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.128 kcal (2) G-P(sol) polarization free energy of solvation -29.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds