Wall clock time and date at job start Mon Mar 30 2020 07:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47457 * 2 1 4 4 H 1.08996 * 109.47575 * 305.00546 * 3 2 1 5 5 C 1.53002 * 109.46925 * 65.00002 * 3 2 1 6 6 C 1.52997 * 109.47415 * 180.02562 * 5 3 2 7 7 C 1.53006 * 109.47164 * 300.00027 * 6 5 3 8 8 C 1.52999 * 109.46626 * 59.99702 * 7 6 5 9 9 H 1.09002 * 109.46719 * 180.02562 * 8 7 6 10 10 N 1.46898 * 109.47222 * 60.00385 * 8 7 6 11 11 C 1.46900 * 111.00190 * 84.99608 * 10 8 7 12 12 C 1.52999 * 109.47165 * 180.02562 * 11 10 8 13 13 O 1.42901 * 109.47131 * 65.00000 * 12 11 10 14 14 C 1.42901 * 113.99981 * 179.97438 * 13 12 11 15 15 C 1.50692 * 109.47253 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00463 * 0.02562 * 15 14 13 17 17 C 1.37879 * 120.00084 * 180.02562 * 15 14 13 18 18 N 1.31512 * 120.00253 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 120.00022 * 180.02562 * 17 15 14 20 20 H 1.48491 * 109.47324 * 89.99766 * 19 17 15 21 21 H 1.48498 * 109.46804 * 209.99940 * 19 17 15 22 22 H 1.48503 * 109.46735 * 329.99661 * 19 17 15 23 23 C 1.52996 * 109.47577 * 184.99976 * 3 2 1 24 24 H 1.08994 * 109.47015 * 299.99451 * 1 2 3 25 25 H 1.09001 * 109.47187 * 59.99636 * 1 2 3 26 26 H 1.09004 * 109.47198 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.47277 * 240.00585 * 2 1 3 28 28 H 1.08996 * 109.47235 * 120.00840 * 2 1 3 29 29 H 1.09000 * 109.46986 * 60.00086 * 5 3 2 30 30 H 1.09001 * 109.47601 * 300.00809 * 5 3 2 31 31 H 1.09001 * 109.46922 * 180.02562 * 6 5 3 32 32 H 1.09000 * 109.47140 * 59.99976 * 6 5 3 33 33 H 1.08993 * 109.46955 * 180.02562 * 7 6 5 34 34 H 1.09000 * 109.47050 * 300.00004 * 7 6 5 35 35 H 1.00898 * 111.00130 * 321.04251 * 10 8 7 36 36 H 1.09005 * 109.46934 * 299.99903 * 11 10 8 37 37 H 1.09002 * 109.47391 * 60.00006 * 11 10 8 38 38 H 1.09006 * 109.46701 * 184.99782 * 12 11 10 39 39 H 1.08992 * 109.47362 * 304.99728 * 12 11 10 40 40 H 1.09005 * 109.47114 * 300.00081 * 14 13 12 41 41 H 1.09000 * 109.46938 * 60.00008 * 14 13 12 42 42 H 0.97000 * 120.00400 * 179.97438 * 18 17 15 43 43 H 1.09000 * 109.47054 * 300.00355 * 23 3 2 44 44 H 1.09001 * 109.46997 * 60.00088 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 1.6353 2.1265 1.3074 6 6 2.1448 3.5691 1.3072 7 6 3.6696 3.5715 1.1812 8 6 4.0743 2.8875 -0.1261 9 1 5.1606 2.8887 -0.2157 10 7 3.4881 3.6136 -1.2606 11 6 4.3400 4.7416 -1.6605 12 6 3.6977 5.4722 -2.8414 13 8 2.4638 6.0598 -2.4239 14 6 1.7795 6.7707 -3.4576 15 6 0.4987 7.3449 -2.9093 16 1 0.2338 7.1835 -1.8747 17 6 -0.3351 8.0763 -3.7282 18 7 -0.0125 8.2733 -4.9879 19 14 -1.9226 8.7886 -3.0483 20 1 -1.6649 10.1492 -2.5122 21 1 -2.9342 8.8672 -4.1326 22 1 -2.4305 7.9156 -1.9597 23 6 3.5648 1.4443 -0.1257 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 2.0699 1.5874 2.1492 30 1 0.5490 2.1251 1.3971 31 1 1.8568 4.0562 2.2389 32 1 1.7098 4.1080 0.4655 33 1 4.0326 4.5992 1.1816 34 1 4.1046 3.0326 2.0230 35 1 2.5527 3.9253 -1.0460 36 1 4.4477 5.4305 -0.8226 37 1 5.3218 4.3695 -1.9534 38 1 4.3709 6.2533 -3.1949 39 1 3.5083 4.7636 -3.6476 40 1 2.4130 7.5788 -3.8236 41 1 1.5503 6.0892 -4.2768 42 1 -0.5993 8.7876 -5.5642 43 1 3.9994 0.9052 0.7161 44 1 3.8532 0.9570 -1.0571 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000395455622.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:37:03 Heat of formation + Delta-G solvation = -103.929282 kcal Electronic energy + Delta-G solvation = -19759.792746 eV Core-core repulsion = 16902.641589 eV Total energy + Delta-G solvation = -2857.151157 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.47455 -38.66437 -36.29041 -34.93918 -33.76241 -31.59739 -30.08131 -29.26899 -27.83439 -24.62880 -24.52702 -23.32944 -22.79020 -21.47462 -19.85710 -18.65902 -17.51952 -17.04337 -16.66012 -16.38963 -16.02032 -15.77928 -15.41537 -15.14471 -14.62283 -14.48203 -14.02977 -13.85012 -13.51592 -13.41066 -13.28542 -12.86012 -12.83857 -12.74756 -12.58694 -12.44268 -12.26029 -12.17459 -11.89274 -11.80649 -11.64625 -11.29611 -11.16753 -10.91834 -10.88645 -10.72496 -10.24247 -9.22948 -8.33195 -6.45716 1.38494 1.41409 1.53362 2.33364 3.00644 3.20964 3.30781 3.79948 3.83417 3.93111 4.18448 4.22935 4.28962 4.36673 4.40904 4.52080 4.55272 4.61621 4.64789 4.70569 4.79440 4.81054 4.82778 4.85580 4.95015 4.96031 5.09050 5.11210 5.17282 5.18548 5.22689 5.31083 5.37678 5.39359 5.48418 5.53369 5.59784 5.70659 5.94531 6.24221 6.49250 6.52543 6.80433 7.26231 8.79263 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.018701 B = 0.004906 C = 0.004344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.902025 B = 5705.946643 C = 6443.597972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.112 4.112 3 C -0.088 4.088 4 H 0.049 0.951 5 C -0.107 4.107 6 C -0.125 4.125 7 C -0.142 4.142 8 C 0.084 3.916 9 H 0.084 0.916 10 N -0.691 5.691 11 C 0.074 3.926 12 C 0.054 3.946 13 O -0.408 6.408 14 C 0.212 3.788 15 C -0.547 4.547 16 H 0.061 0.939 17 C 0.007 3.993 18 N -0.931 5.931 19 Si 0.982 3.018 20 H -0.267 1.267 21 H -0.274 1.274 22 H -0.265 1.265 23 C -0.093 4.093 24 H 0.057 0.943 25 H 0.040 0.960 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.072 0.928 29 H 0.075 0.925 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.038 0.962 33 H 0.047 0.953 34 H 0.084 0.916 35 H 0.343 0.657 36 H 0.030 0.970 37 H 0.103 0.897 38 H 0.047 0.953 39 H 0.041 0.959 40 H -0.015 1.015 41 H -0.017 1.017 42 H 0.271 0.729 43 H 0.080 0.920 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.948 -15.051 12.860 20.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.150 4.150 3 C -0.107 4.107 4 H 0.068 0.932 5 C -0.144 4.144 6 C -0.163 4.163 7 C -0.181 4.181 8 C -0.026 4.026 9 H 0.102 0.898 10 N -0.325 5.325 11 C -0.055 4.055 12 C -0.024 4.024 13 O -0.328 6.328 14 C 0.137 3.863 15 C -0.584 4.584 16 H 0.079 0.921 17 C -0.191 4.191 18 N -0.570 5.570 19 Si 0.805 3.195 20 H -0.192 1.192 21 H -0.199 1.199 22 H -0.189 1.189 23 C -0.131 4.131 24 H 0.076 0.924 25 H 0.059 0.941 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.057 0.943 33 H 0.066 0.934 34 H 0.102 0.898 35 H 0.164 0.836 36 H 0.048 0.952 37 H 0.121 0.879 38 H 0.065 0.935 39 H 0.059 0.941 40 H 0.002 0.998 41 H 0.001 0.999 42 H 0.080 0.920 43 H 0.098 0.902 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.087 -15.411 12.398 21.010 hybrid contribution -0.804 1.432 0.074 1.644 sum 6.282 -13.980 12.471 19.759 Atomic orbital electron populations 1.21833 0.96270 1.01695 1.01480 1.21509 0.95627 0.95716 1.02142 1.21118 0.96015 0.96144 0.97385 0.93230 1.21574 1.00452 0.94582 0.97792 1.21537 0.96059 0.97707 1.01010 1.22121 0.96035 1.00478 0.99475 1.21673 0.98883 0.94248 0.87774 0.89774 1.60733 1.06298 1.26512 1.38922 1.21935 0.96794 0.91405 0.95359 1.22623 0.86300 0.95606 0.97835 1.87755 1.35298 1.71172 1.38600 1.19784 0.91132 0.89166 0.86255 1.21361 1.05335 1.33955 0.97792 0.92075 1.25954 1.02346 0.95939 0.94900 1.70070 1.39597 1.40749 1.06563 0.85201 0.77324 0.78798 0.78209 1.19228 1.19865 1.18883 1.21527 0.94877 0.94684 1.01991 0.92434 0.94127 0.92009 0.92255 0.90915 0.90652 0.92280 0.91687 0.94310 0.93378 0.89758 0.83641 0.95160 0.87866 0.93505 0.94066 0.99776 0.99883 0.92033 0.90175 0.92046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.95 9.67 71.98 0.70 -2.25 16 2 C -0.11 -2.07 5.40 30.59 0.17 -1.90 16 3 C -0.09 -1.92 1.95 -10.80 -0.02 -1.94 16 4 H 0.05 1.41 7.21 -2.39 -0.02 1.39 16 5 C -0.11 -2.21 4.96 30.59 0.15 -2.06 16 6 C -0.13 -3.04 5.67 30.60 0.17 -2.86 16 7 C -0.14 -3.10 5.52 30.60 0.17 -2.93 16 8 C 0.08 1.90 2.85 44.93 0.13 2.03 16 9 H 0.08 1.70 7.80 -2.39 -0.02 1.68 16 10 N -0.69 -20.64 5.77 -491.49 -2.83 -23.47 16 11 C 0.07 2.25 5.90 86.30 0.51 2.76 16 12 C 0.05 2.07 6.28 71.98 0.45 2.52 16 13 O -0.41 -20.34 9.85 -148.98 -1.47 -21.81 16 14 C 0.21 12.22 5.69 71.23 0.41 12.62 16 15 C -0.55 -33.11 9.43 25.60 0.24 -32.87 16 16 H 0.06 3.65 7.81 -2.91 -0.02 3.63 16 17 C 0.01 0.42 5.46 84.66 0.46 0.88 16 18 N -0.93 -56.75 13.29 21.45 0.28 -56.46 16 19 Si 0.98 44.88 29.54 68.60 2.03 46.90 16 20 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 21 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 22 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 23 C -0.09 -1.86 4.92 30.61 0.15 -1.71 16 24 H 0.06 1.06 6.56 -2.39 -0.02 1.04 16 25 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 27 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 28 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.06 1.26 6.57 -2.39 -0.02 1.24 16 31 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.04 1.19 6.26 -2.39 -0.01 1.18 16 33 H 0.05 1.16 7.45 -2.39 -0.02 1.14 16 34 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.34 11.98 5.12 -89.70 -0.46 11.52 16 36 H 0.03 0.93 7.44 -2.38 -0.02 0.91 16 37 H 0.10 2.51 8.06 -2.39 -0.02 2.49 16 38 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 39 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 40 H -0.02 -0.93 8.14 -2.38 -0.02 -0.95 16 41 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 42 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 43 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -65.12 337.89 2.17 -62.95 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: 0.48 Total: 19.61 kcal Atomic # 6 Polarization: -31.40 SS G_CDS: 3.68 Total: -27.72 kcal Atomic # 7 Polarization: -77.39 SS G_CDS: -2.55 Total: -79.94 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -1.47 Total: -21.81 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal Total: -65.12 2.17 -62.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000395455622.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.979 kcal (2) G-P(sol) polarization free energy of solvation -65.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds