Wall clock time and date at job start Mon Mar 30 2020 06:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42905 * 114.00286 * 2 1 4 4 H 1.08997 * 109.46727 * 29.99851 * 3 2 1 5 5 C 1.53005 * 109.46569 * 269.99975 * 3 2 1 6 6 N 1.46902 * 109.47252 * 66.42339 * 5 3 2 7 7 C 1.46844 * 111.00145 * 52.89707 * 6 5 3 8 8 C 1.53041 * 109.52377 * 185.84315 * 7 6 5 9 9 C 1.53116 * 109.27690 * 300.82261 * 8 7 6 10 10 C 1.50703 * 109.57550 * 177.59181 * 9 8 7 11 11 H 1.07999 * 119.99737 * 240.28793 * 10 9 8 12 12 C 1.37876 * 119.99933 * 60.28662 * 10 9 8 13 13 N 1.31507 * 119.99945 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99709 * 180.02562 * 12 10 9 15 15 H 1.48505 * 109.47242 * 59.99792 * 14 12 10 16 16 H 1.48499 * 109.46758 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.46891 * 299.99826 * 14 12 10 18 18 C 1.53120 * 109.16231 * 57.65483 * 9 8 7 19 19 C 1.46842 * 111.00137 * 177.11215 * 6 5 3 20 20 C 1.52995 * 109.47136 * 150.00306 * 3 2 1 21 21 C 1.52995 * 109.47357 * 59.99917 * 20 3 2 22 22 C 1.52997 * 109.47203 * 299.99550 * 20 3 2 23 23 H 1.08996 * 109.46459 * 300.00303 * 1 2 3 24 24 H 1.08999 * 109.46869 * 59.99889 * 1 2 3 25 25 H 1.09002 * 109.47030 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46520 * 186.41684 * 5 3 2 27 27 H 1.09001 * 109.47376 * 306.41561 * 5 3 2 28 28 H 1.09001 * 109.46540 * 305.85839 * 7 6 5 29 29 H 1.09000 * 109.46124 * 65.82899 * 7 6 5 30 30 H 1.08997 * 109.50448 * 180.88681 * 8 7 6 31 31 H 1.08996 * 109.50560 * 60.76357 * 8 7 6 32 32 H 1.09005 * 109.52805 * 297.75081 * 9 8 7 33 33 H 0.96998 * 120.00012 * 180.02562 * 13 12 10 34 34 H 1.09002 * 109.50453 * 182.40730 * 18 9 8 35 35 H 1.09000 * 109.53390 * 62.30551 * 18 9 8 36 36 H 1.08996 * 109.46101 * 294.17184 * 19 6 5 37 37 H 1.09004 * 109.46131 * 54.15046 * 19 6 5 38 38 H 1.09006 * 109.47041 * 180.02562 * 20 3 2 39 39 H 1.08999 * 109.47378 * 59.99898 * 21 20 3 40 40 H 1.09001 * 109.46926 * 179.97438 * 21 20 3 41 41 H 1.08996 * 109.47270 * 299.99404 * 21 20 3 42 42 H 1.09005 * 109.46958 * 60.00175 * 22 20 3 43 43 H 1.08997 * 109.47467 * 180.02562 * 22 20 3 44 44 H 1.09005 * 109.47572 * 300.00782 * 22 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2177 1.7713 -1.4426 6 7 0.9120 1.9596 -2.0889 7 6 0.0503 2.8385 -1.2882 8 6 -1.3451 2.8951 -1.9140 9 6 -1.2355 3.4240 -3.3467 10 6 -2.5985 3.4269 -3.9897 11 1 -2.7769 2.8415 -4.8796 12 6 -3.6176 4.1766 -3.4417 13 7 -3.4003 4.8889 -2.3578 14 14 -5.3072 4.1795 -4.2383 15 1 -5.8486 2.7968 -4.2559 16 1 -6.2189 5.0577 -3.4619 17 1 -5.1975 4.6859 -5.6299 18 6 -0.2945 2.5185 -4.1462 19 6 1.0705 2.4728 -3.4556 20 6 3.3590 1.2632 0.7212 21 6 4.2927 0.2892 -0.0001 22 6 3.1516 0.7974 2.1637 23 1 -0.3632 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 2.7636 2.7148 -1.4447 27 1 2.7885 1.0200 -1.9885 28 1 -0.0226 2.4488 -0.2728 29 1 0.4777 3.8409 -1.2625 30 1 -1.9800 3.5599 -1.3284 31 1 -1.7788 1.8952 -1.9275 32 1 -0.8380 4.4389 -3.3310 33 1 -4.1174 5.4161 -1.9721 34 1 -0.1787 2.9142 -5.1552 35 1 -0.7113 1.5125 -4.1954 36 1 1.4931 3.4769 -3.4197 37 1 1.7384 1.8174 -4.0145 38 1 3.8022 2.2591 0.7215 39 1 4.4405 0.6210 -1.0277 40 1 5.2537 0.2595 0.5135 41 1 3.8494 -0.7066 0.0000 42 1 2.7082 -0.1984 2.1637 43 1 4.1123 0.7677 2.6776 44 1 2.4863 1.4913 2.6776 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397236971.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:55 Heat of formation + Delta-G solvation = -59.610028 kcal Electronic energy + Delta-G solvation = -20578.219987 eV Core-core repulsion = 17722.990657 eV Total energy + Delta-G solvation = -2855.229329 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.38494 -37.30571 -34.75946 -33.75627 -31.40950 -29.90111 -28.36003 -27.09402 -26.06082 -25.19745 -23.04119 -22.04060 -20.98292 -19.61969 -18.63613 -16.44390 -16.31021 -15.67137 -15.33471 -14.62820 -14.37558 -14.10288 -13.83658 -13.41868 -13.12950 -13.09693 -12.82875 -12.38699 -12.29467 -12.11977 -11.94602 -11.58108 -11.51023 -11.10705 -10.93128 -10.78160 -10.73411 -10.61837 -10.44682 -10.23348 -10.14302 -9.98055 -9.45460 -9.16433 -8.94554 -8.65897 -8.28545 -7.68860 -5.96847 -4.02119 3.33144 3.37628 3.40641 4.07698 4.33912 4.45814 4.86325 4.96786 5.07871 5.32320 5.37191 5.47068 5.64000 5.66905 5.67782 5.74174 5.78647 5.86268 5.88939 5.91084 5.96808 6.06957 6.09944 6.15883 6.21072 6.32200 6.32882 6.39435 6.41910 6.58548 6.63777 6.86830 7.08940 7.16683 7.42866 7.52935 7.62425 7.70291 7.83558 8.04992 8.15560 8.48870 9.01392 9.62285 11.09324 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.037001 B = 0.004971 C = 0.004735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.548648 B = 5630.803463 C = 5912.124286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.375 6.375 3 C 0.093 3.907 4 H 0.064 0.936 5 C 0.032 3.968 6 N -0.531 5.531 7 C 0.045 3.955 8 C -0.103 4.103 9 C 0.048 3.952 10 C -0.510 4.510 11 H 0.054 0.946 12 C 0.061 3.939 13 N -0.893 5.893 14 Si 0.889 3.111 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.278 1.278 18 C -0.106 4.106 19 C 0.061 3.939 20 C -0.092 4.092 21 C -0.142 4.142 22 C -0.143 4.143 23 H 0.028 0.972 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.031 0.969 27 H 0.078 0.922 28 H 0.058 0.942 29 H 0.021 0.979 30 H 0.092 0.908 31 H 0.043 0.957 32 H 0.020 0.980 33 H 0.259 0.741 34 H 0.049 0.951 35 H 0.056 0.944 36 H 0.023 0.977 37 H 0.057 0.943 38 H 0.075 0.925 39 H 0.054 0.946 40 H 0.047 0.953 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.051 0.949 44 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.008 -6.564 6.335 15.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.294 6.294 3 C 0.034 3.966 4 H 0.082 0.918 5 C -0.097 4.097 6 N -0.256 5.256 7 C -0.082 4.082 8 C -0.141 4.141 9 C 0.030 3.970 10 C -0.549 4.549 11 H 0.072 0.928 12 C -0.139 4.139 13 N -0.532 5.532 14 Si 0.718 3.282 15 H -0.203 1.203 16 H -0.214 1.214 17 H -0.204 1.204 18 C -0.144 4.144 19 C -0.066 4.066 20 C -0.111 4.111 21 C -0.200 4.200 22 C -0.200 4.200 23 H 0.047 0.953 24 H 0.098 0.902 25 H 0.091 0.909 26 H 0.049 0.951 27 H 0.097 0.903 28 H 0.077 0.923 29 H 0.040 0.960 30 H 0.110 0.890 31 H 0.062 0.938 32 H 0.038 0.962 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.041 0.959 37 H 0.075 0.925 38 H 0.093 0.907 39 H 0.073 0.927 40 H 0.067 0.933 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.070 0.930 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 11.786 -7.059 6.421 15.165 hybrid contribution -0.746 1.150 -0.336 1.412 sum 11.040 -5.908 6.085 13.922 Atomic orbital electron populations 1.23047 0.80802 1.02061 1.01632 1.87778 1.20028 1.26578 1.95031 1.22225 0.94185 0.85748 0.94400 0.91827 1.22734 0.91998 0.99398 0.95548 1.62059 1.11645 1.49295 1.02625 1.22488 0.96347 0.93045 0.96311 1.21665 0.92045 1.00723 0.99674 1.18671 0.93544 0.93496 0.91304 1.21179 0.95283 1.27350 1.11056 0.92811 1.24958 0.98673 0.95315 0.95000 1.69861 1.32681 1.29873 1.20798 0.86701 0.84231 0.77916 0.79391 1.20302 1.21385 1.20381 1.21675 0.93615 1.01100 0.97987 1.22103 0.98942 0.96564 0.89030 1.21216 0.94657 0.99792 0.95462 1.21779 0.98124 1.00182 0.99877 1.21760 1.01084 1.02086 0.95119 0.95293 0.90175 0.90865 0.95087 0.90327 0.92341 0.96046 0.89013 0.93848 0.96230 0.93070 0.93246 0.92495 0.95913 0.92482 0.90665 0.92671 0.93347 0.91719 0.91791 0.93003 0.93119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.69 101.05 0.98 1.29 16 2 O -0.38 -5.67 9.00 -35.23 -0.32 -5.99 16 3 C 0.09 1.29 1.88 -26.73 -0.05 1.24 16 4 H 0.06 0.94 5.56 -51.93 -0.29 0.65 16 5 C 0.03 0.47 4.22 -3.82 -0.02 0.46 16 6 N -0.53 -9.43 3.42 -234.66 -0.80 -10.24 16 7 C 0.05 0.87 3.96 -3.83 -0.02 0.86 16 8 C -0.10 -2.39 5.06 -26.65 -0.13 -2.52 16 9 C 0.05 1.20 2.16 -91.65 -0.20 1.00 16 10 C -0.51 -13.99 8.56 -34.44 -0.29 -14.29 16 11 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 12 C 0.06 1.69 5.31 -17.82 -0.09 1.59 16 13 N -0.89 -25.31 11.37 55.43 0.63 -24.68 16 14 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 15 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 16 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 C -0.11 -2.24 5.32 -26.65 -0.14 -2.38 16 19 C 0.06 1.12 5.46 -3.83 -0.02 1.10 16 20 C -0.09 -1.05 2.81 -90.63 -0.25 -1.31 16 21 C -0.14 -1.53 8.70 37.15 0.32 -1.20 16 22 C -0.14 -1.51 9.05 37.16 0.34 -1.17 16 23 H 0.03 0.41 8.01 -51.93 -0.42 -0.01 16 24 H 0.08 1.38 4.68 -51.93 -0.24 1.14 16 25 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.03 0.45 8.14 -51.92 -0.42 0.03 16 27 H 0.08 1.15 6.79 -51.93 -0.35 0.80 16 28 H 0.06 1.04 4.41 -51.93 -0.23 0.81 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.09 2.38 6.17 -51.93 -0.32 2.06 16 31 H 0.04 1.02 7.62 -51.93 -0.40 0.63 16 32 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 34 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 36 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.93 8.12 -51.93 -0.42 0.51 16 38 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.05 0.59 6.58 -51.93 -0.34 0.25 16 40 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.06 0.76 7.68 -51.93 -0.40 0.36 16 42 H 0.06 0.72 7.68 -51.93 -0.40 0.33 16 43 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 325.74 15.07 4.91 4.91 Total: -1.00 -27.78 325.74 -8.18 -35.97 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -8.00 Total: -0.88 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: 0.42 Total: -15.33 kcal Atomic # 7 Polarization: -34.75 SS G_CDS: -0.17 Total: -34.92 kcal Atomic # 8 Polarization: -5.67 SS G_CDS: -0.32 Total: -5.99 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -27.78 -8.18 -35.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397236971.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.643 kcal (2) G-P(sol) polarization free energy of solvation -27.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds