Wall clock time and date at job start Mon Mar 30 2020 06:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42905 * 114.00286 * 2 1 4 4 H 1.08997 * 109.46727 * 29.99851 * 3 2 1 5 5 C 1.53005 * 109.46569 * 269.99975 * 3 2 1 6 6 N 1.46902 * 109.47252 * 66.42339 * 5 3 2 7 7 C 1.46844 * 111.00145 * 52.89707 * 6 5 3 8 8 C 1.53041 * 109.52377 * 185.84315 * 7 6 5 9 9 C 1.53116 * 109.27690 * 300.82261 * 8 7 6 10 10 C 1.50703 * 109.57550 * 177.59181 * 9 8 7 11 11 H 1.07999 * 119.99737 * 240.28793 * 10 9 8 12 12 C 1.37876 * 119.99933 * 60.28662 * 10 9 8 13 13 N 1.31507 * 119.99945 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99709 * 180.02562 * 12 10 9 15 15 H 1.48505 * 109.47242 * 59.99792 * 14 12 10 16 16 H 1.48499 * 109.46758 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.46891 * 299.99826 * 14 12 10 18 18 C 1.53120 * 109.16231 * 57.65483 * 9 8 7 19 19 C 1.46842 * 111.00137 * 177.11215 * 6 5 3 20 20 C 1.52995 * 109.47136 * 150.00306 * 3 2 1 21 21 C 1.52995 * 109.47357 * 59.99917 * 20 3 2 22 22 C 1.52997 * 109.47203 * 299.99550 * 20 3 2 23 23 H 1.08996 * 109.46459 * 300.00303 * 1 2 3 24 24 H 1.08999 * 109.46869 * 59.99889 * 1 2 3 25 25 H 1.09002 * 109.47030 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46520 * 186.41684 * 5 3 2 27 27 H 1.09001 * 109.47376 * 306.41561 * 5 3 2 28 28 H 1.09001 * 109.46540 * 305.85839 * 7 6 5 29 29 H 1.09000 * 109.46124 * 65.82899 * 7 6 5 30 30 H 1.08997 * 109.50448 * 180.88681 * 8 7 6 31 31 H 1.08996 * 109.50560 * 60.76357 * 8 7 6 32 32 H 1.09005 * 109.52805 * 297.75081 * 9 8 7 33 33 H 0.96998 * 120.00012 * 180.02562 * 13 12 10 34 34 H 1.09002 * 109.50453 * 182.40730 * 18 9 8 35 35 H 1.09000 * 109.53390 * 62.30551 * 18 9 8 36 36 H 1.08996 * 109.46101 * 294.17184 * 19 6 5 37 37 H 1.09004 * 109.46131 * 54.15046 * 19 6 5 38 38 H 1.09006 * 109.47041 * 180.02562 * 20 3 2 39 39 H 1.08999 * 109.47378 * 59.99898 * 21 20 3 40 40 H 1.09001 * 109.46926 * 179.97438 * 21 20 3 41 41 H 1.08996 * 109.47270 * 299.99404 * 21 20 3 42 42 H 1.09005 * 109.46958 * 60.00175 * 22 20 3 43 43 H 1.08997 * 109.47467 * 180.02562 * 22 20 3 44 44 H 1.09005 * 109.47572 * 300.00782 * 22 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2177 1.7713 -1.4426 6 7 0.9120 1.9596 -2.0889 7 6 0.0503 2.8385 -1.2882 8 6 -1.3451 2.8951 -1.9140 9 6 -1.2355 3.4240 -3.3467 10 6 -2.5985 3.4269 -3.9897 11 1 -2.7769 2.8415 -4.8796 12 6 -3.6176 4.1766 -3.4417 13 7 -3.4003 4.8889 -2.3578 14 14 -5.3072 4.1795 -4.2383 15 1 -5.8486 2.7968 -4.2559 16 1 -6.2189 5.0577 -3.4619 17 1 -5.1975 4.6859 -5.6299 18 6 -0.2945 2.5185 -4.1462 19 6 1.0705 2.4728 -3.4556 20 6 3.3590 1.2632 0.7212 21 6 4.2927 0.2892 -0.0001 22 6 3.1516 0.7974 2.1637 23 1 -0.3632 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 2.7636 2.7148 -1.4447 27 1 2.7885 1.0200 -1.9885 28 1 -0.0226 2.4488 -0.2728 29 1 0.4777 3.8409 -1.2625 30 1 -1.9800 3.5599 -1.3284 31 1 -1.7788 1.8952 -1.9275 32 1 -0.8380 4.4389 -3.3310 33 1 -4.1174 5.4161 -1.9721 34 1 -0.1787 2.9142 -5.1552 35 1 -0.7113 1.5125 -4.1954 36 1 1.4931 3.4769 -3.4197 37 1 1.7384 1.8174 -4.0145 38 1 3.8022 2.2591 0.7215 39 1 4.4405 0.6210 -1.0277 40 1 5.2537 0.2595 0.5135 41 1 3.8494 -0.7066 0.0000 42 1 2.7082 -0.1984 2.1637 43 1 4.1123 0.7677 2.6776 44 1 2.4863 1.4913 2.6776 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397236971.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:55 Heat of formation + Delta-G solvation = -75.011576 kcal Electronic energy + Delta-G solvation = -20578.887848 eV Core-core repulsion = 17722.990657 eV Total energy + Delta-G solvation = -2855.897191 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.69032 -38.74198 -35.85124 -35.47925 -33.23564 -31.57279 -29.70983 -27.94742 -27.55349 -26.71530 -24.58937 -23.66898 -22.40460 -20.69068 -20.39049 -18.45069 -17.49096 -17.04949 -16.58571 -16.47346 -15.72054 -15.46344 -14.90262 -14.83451 -14.76799 -14.36483 -14.26045 -13.88452 -13.81154 -13.41692 -13.12007 -12.92886 -12.81408 -12.65879 -12.54518 -12.27019 -12.12091 -12.02744 -11.89547 -11.69829 -11.54878 -11.43149 -11.23169 -10.80767 -10.65795 -10.41249 -10.24759 -9.12341 -8.07793 -6.21053 1.41766 1.42769 1.50356 2.44020 2.96429 2.99309 3.19255 3.80558 3.95331 4.13047 4.21407 4.27251 4.29875 4.36435 4.46042 4.55039 4.61911 4.65433 4.74081 4.75570 4.80142 4.89623 4.91609 4.94934 4.99272 5.05252 5.06414 5.13705 5.14921 5.22641 5.25794 5.37376 5.46744 5.55053 5.56417 5.62955 5.99997 6.01830 6.27071 6.32068 6.40331 6.41661 6.90049 7.46732 8.96589 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.037001 B = 0.004971 C = 0.004735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.548648 B = 5630.803463 C = 5912.124286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.380 6.380 3 C 0.092 3.908 4 H 0.054 0.946 5 C 0.033 3.967 6 N -0.535 5.535 7 C 0.061 3.939 8 C -0.092 4.092 9 C 0.044 3.956 10 C -0.534 4.534 11 H 0.050 0.950 12 C 0.014 3.986 13 N -0.917 5.917 14 Si 0.951 3.049 15 H -0.272 1.272 16 H -0.284 1.284 17 H -0.273 1.273 18 C -0.098 4.098 19 C 0.066 3.934 20 C -0.091 4.091 21 C -0.139 4.139 22 C -0.140 4.140 23 H 0.034 0.966 24 H 0.056 0.944 25 H 0.087 0.913 26 H 0.041 0.959 27 H 0.088 0.912 28 H 0.075 0.925 29 H 0.011 0.989 30 H 0.060 0.940 31 H 0.033 0.967 32 H -0.014 1.014 33 H 0.260 0.740 34 H 0.052 0.948 35 H 0.051 0.949 36 H 0.021 0.979 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.055 0.945 40 H 0.065 0.935 41 H 0.051 0.949 42 H 0.053 0.947 43 H 0.069 0.931 44 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.221 -7.409 6.551 16.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.299 6.299 3 C 0.034 3.966 4 H 0.072 0.928 5 C -0.094 4.094 6 N -0.260 5.260 7 C -0.066 4.066 8 C -0.130 4.130 9 C 0.026 3.974 10 C -0.572 4.572 11 H 0.068 0.932 12 C -0.184 4.184 13 N -0.557 5.557 14 Si 0.777 3.223 15 H -0.197 1.197 16 H -0.209 1.209 17 H -0.198 1.198 18 C -0.136 4.136 19 C -0.061 4.061 20 C -0.109 4.109 21 C -0.196 4.196 22 C -0.198 4.198 23 H 0.052 0.948 24 H 0.074 0.926 25 H 0.105 0.895 26 H 0.059 0.941 27 H 0.107 0.893 28 H 0.093 0.907 29 H 0.029 0.971 30 H 0.079 0.921 31 H 0.052 0.948 32 H 0.004 0.996 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.039 0.961 37 H 0.103 0.897 38 H 0.106 0.894 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.088 0.912 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 13.015 -7.913 6.633 16.613 hybrid contribution -1.110 1.415 -0.406 1.844 sum 11.905 -6.498 6.227 14.924 Atomic orbital electron populations 1.22996 0.80933 1.02747 1.00659 1.87782 1.19899 1.27265 1.94976 1.22319 0.95405 0.85033 0.93875 0.92832 1.22814 0.90371 1.00156 0.96080 1.62019 1.13261 1.48367 1.02395 1.22209 0.94343 0.93044 0.97022 1.21399 0.94055 0.98963 0.98584 1.18653 0.93341 0.92598 0.92822 1.21552 0.96842 1.27555 1.11257 0.93173 1.25709 1.02240 0.94975 0.95491 1.70001 1.33643 1.30285 1.21779 0.85716 0.79875 0.78091 0.78593 1.19697 1.20945 1.19799 1.21533 0.94552 0.99610 0.97940 1.22037 0.97371 0.97293 0.89417 1.21250 0.93226 1.00804 0.95664 1.21746 0.98665 0.99147 1.00053 1.21735 1.01986 1.01339 0.94715 0.94774 0.92562 0.89485 0.94117 0.89348 0.90729 0.97103 0.92148 0.94841 0.99571 0.93095 0.92954 0.93059 0.96100 0.89704 0.89443 0.92646 0.91566 0.92938 0.92827 0.91221 0.93248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.67 9.69 113.37 1.10 1.76 16 2 O -0.38 -10.87 9.00 -148.98 -1.34 -12.21 16 3 C 0.09 2.38 1.88 30.59 0.06 2.44 16 4 H 0.05 1.50 5.56 -2.39 -0.01 1.49 16 5 C 0.03 0.93 4.22 86.30 0.36 1.29 16 6 N -0.54 -18.40 3.42 -896.34 -3.07 -21.47 16 7 C 0.06 2.37 3.96 86.33 0.34 2.71 16 8 C -0.09 -4.37 5.06 30.65 0.16 -4.22 16 9 C 0.04 2.26 2.16 -11.46 -0.02 2.24 16 10 C -0.53 -29.90 8.56 25.60 0.22 -29.68 16 11 H 0.05 2.77 7.74 -2.91 -0.02 2.74 16 12 C 0.01 0.80 5.31 84.66 0.45 1.25 16 13 N -0.92 -53.26 11.37 21.45 0.24 -53.02 16 14 Si 0.95 43.96 29.54 68.60 2.03 45.99 16 15 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 16 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 17 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 18 C -0.10 -4.15 5.32 30.65 0.16 -3.99 16 19 C 0.07 2.33 5.46 86.33 0.47 2.81 16 20 C -0.09 -1.83 2.81 -10.80 -0.03 -1.86 16 21 C -0.14 -2.59 8.70 71.98 0.63 -1.96 16 22 C -0.14 -2.63 9.05 71.98 0.65 -1.98 16 23 H 0.03 0.93 8.01 -2.39 -0.02 0.91 16 24 H 0.06 1.91 4.68 -2.39 -0.01 1.90 16 25 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 26 H 0.04 1.08 8.14 -2.38 -0.02 1.06 16 27 H 0.09 2.33 6.79 -2.39 -0.02 2.31 16 28 H 0.07 2.64 4.41 -2.39 -0.01 2.63 16 29 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.06 3.25 6.17 -2.39 -0.01 3.24 16 31 H 0.03 1.62 7.62 -2.39 -0.02 1.60 16 32 H -0.01 -0.79 8.14 -2.38 -0.02 -0.81 16 33 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 34 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.02 0.74 8.14 -2.39 -0.02 0.73 16 37 H 0.08 2.54 8.12 -2.38 -0.02 2.52 16 38 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 39 H 0.05 1.02 6.58 -2.39 -0.02 1.01 16 40 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.05 1.11 7.68 -2.39 -0.02 1.09 16 42 H 0.05 1.11 7.68 -2.38 -0.02 1.10 16 43 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 Total: -1.00 -59.95 325.74 3.34 -56.61 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: 0.94 Total: 13.29 kcal Atomic # 6 Polarization: -33.73 SS G_CDS: 4.54 Total: -29.19 kcal Atomic # 7 Polarization: -71.66 SS G_CDS: -2.82 Total: -74.48 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: -1.34 Total: -12.21 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -59.95 3.34 -56.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397236971.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.402 kcal (2) G-P(sol) polarization free energy of solvation -59.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds