Wall clock time and date at job start Mon Mar 30 2020 06:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42902 * 114.00044 * 2 1 4 4 H 1.08997 * 109.46910 * 336.67022 * 3 2 1 5 5 C 1.52997 * 109.47111 * 96.67211 * 3 2 1 6 6 N 1.46904 * 109.47122 * 293.37325 * 5 3 2 7 7 C 1.46849 * 111.00284 * 168.67673 * 6 5 3 8 8 C 1.53037 * 109.52215 * 185.83610 * 7 6 5 9 9 C 1.53117 * 109.27475 * 300.81262 * 8 7 6 10 10 C 1.50709 * 109.57138 * 177.59196 * 9 8 7 11 11 H 1.07994 * 119.99763 * 245.73819 * 10 9 8 12 12 C 1.37878 * 119.99505 * 65.74121 * 10 9 8 13 13 N 1.31511 * 120.00303 * 5.94721 * 12 10 9 14 14 Si 1.86805 * 119.99525 * 185.95034 * 12 10 9 15 15 H 1.48501 * 109.47111 * 94.99435 * 14 12 10 16 16 H 1.48502 * 109.46952 * 214.99022 * 14 12 10 17 17 H 1.48494 * 109.47068 * 334.99261 * 14 12 10 18 18 C 1.53120 * 109.16004 * 57.66004 * 9 8 7 19 19 C 1.46850 * 110.99199 * 292.87977 * 6 5 3 20 20 C 1.52996 * 109.46943 * 216.67227 * 3 2 1 21 21 C 1.52999 * 109.47388 * 60.98214 * 20 3 2 22 22 C 1.52999 * 109.47134 * 180.98650 * 20 3 2 23 23 H 1.09001 * 109.47344 * 183.21178 * 1 2 3 24 24 H 1.09002 * 109.46908 * 303.21095 * 1 2 3 25 25 H 1.08997 * 109.47538 * 63.20923 * 1 2 3 26 26 H 1.09007 * 109.47353 * 53.36456 * 5 3 2 27 27 H 1.08996 * 109.47205 * 173.36784 * 5 3 2 28 28 H 1.09005 * 109.45558 * 305.84737 * 7 6 5 29 29 H 1.08994 * 109.46396 * 65.81463 * 7 6 5 30 30 H 1.09004 * 109.49673 * 180.87900 * 8 7 6 31 31 H 1.08998 * 109.53695 * 60.77721 * 8 7 6 32 32 H 1.08993 * 109.52820 * 297.75351 * 9 8 7 33 33 H 0.97000 * 119.99965 * 180.02562 * 13 12 10 34 34 H 1.09002 * 109.50146 * 182.39966 * 18 9 8 35 35 H 1.08999 * 109.53495 * 62.30335 * 18 9 8 36 36 H 1.09003 * 109.46383 * 294.17474 * 19 6 5 37 37 H 1.08998 * 109.46544 * 54.16307 * 19 6 5 38 38 H 1.09005 * 109.47578 * 300.98571 * 20 3 2 39 39 H 1.09001 * 109.47029 * 175.00436 * 21 20 3 40 40 H 1.09000 * 109.47523 * 295.00919 * 21 20 3 41 41 H 1.09000 * 109.46782 * 55.00613 * 21 20 3 42 42 H 1.09000 * 109.47717 * 180.02562 * 22 20 3 43 43 H 1.09005 * 109.47134 * 299.99933 * 22 20 3 44 44 H 1.08997 * 109.47295 * 59.99547 * 22 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.2959 2.0212 -0.4070 5 6 2.3708 1.7032 1.4327 6 7 1.1413 1.8622 2.2209 7 6 1.4454 1.9785 3.6528 8 6 0.1410 1.9961 4.4529 9 6 -0.7161 3.1800 3.9964 10 6 -2.0278 3.1694 4.7383 11 1 -2.9497 2.9977 4.2027 12 6 -2.0508 3.3790 6.1009 13 7 -0.9453 3.7036 6.7350 14 14 -3.6522 3.2017 7.0462 15 1 -3.7437 1.8320 7.6126 16 1 -3.6892 4.1965 8.1482 17 1 -4.7966 3.4357 6.1294 18 6 -0.9779 3.0605 2.4925 19 6 0.3590 3.0120 1.7491 20 6 3.2746 1.3007 -0.8615 21 6 2.9104 0.9268 -2.2997 22 6 3.9104 2.6922 -0.8417 23 1 -0.3634 -1.0260 0.0576 24 1 -0.3633 0.5629 0.8598 25 1 -0.3634 0.4632 -0.9173 26 1 2.9912 0.9266 1.8802 27 1 2.9194 2.6449 1.4212 28 1 2.0518 1.1284 3.9654 29 1 1.9949 2.9023 3.8335 30 1 0.3666 2.0982 5.5144 31 1 -0.4027 1.0666 4.2841 32 1 -0.1891 4.1117 4.2014 33 1 -0.9614 3.8507 7.6936 34 1 -1.5518 3.9229 2.1534 35 1 -1.5393 2.1480 2.2916 36 1 0.9135 3.9310 1.9389 37 1 0.1760 2.9124 0.6793 38 1 3.9819 0.5724 -0.4648 39 1 3.7947 1.0096 -2.9316 40 1 2.5396 -0.0978 -2.3260 41 1 2.1375 1.6024 -2.6661 42 1 4.8110 2.6890 -1.4558 43 1 3.2032 3.4206 -1.2384 44 1 4.1699 2.9586 0.1829 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397236983.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:58 Heat of formation + Delta-G solvation = -65.443581 kcal Electronic energy + Delta-G solvation = -20423.302302 eV Core-core repulsion = 17567.820011 eV Total energy + Delta-G solvation = -2855.482291 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.23869 -37.36614 -34.99572 -33.71346 -31.39718 -29.91302 -28.37419 -27.27878 -26.06844 -25.01348 -22.96982 -22.00544 -21.05020 -19.88606 -18.63158 -16.56010 -16.40036 -15.68001 -15.27579 -14.63778 -14.40311 -14.22498 -13.85683 -13.32722 -13.23967 -12.96649 -12.87148 -12.40414 -12.32234 -12.23581 -12.11107 -11.50078 -11.29386 -11.19383 -11.08306 -10.91648 -10.79800 -10.75030 -10.44456 -10.32300 -10.19802 -10.03230 -9.45322 -9.28537 -8.85450 -8.70410 -8.28854 -7.67020 -5.97936 -4.00300 3.32361 3.39562 3.42580 3.97851 4.31735 4.47044 4.83015 4.96300 5.07147 5.26945 5.34417 5.40915 5.53807 5.59001 5.63093 5.65471 5.74609 5.77827 5.81174 5.88051 5.95000 6.01700 6.06398 6.10918 6.17313 6.22228 6.27367 6.29371 6.35077 6.58084 6.63298 6.82640 7.06068 7.15138 7.40491 7.48864 7.61735 7.71549 7.84023 8.04181 8.08594 8.49126 9.03988 9.63468 11.10853 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.040360 B = 0.004718 C = 0.004527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.596889 B = 5933.368990 C = 6184.241802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.378 6.378 3 C 0.100 3.900 4 H 0.060 0.940 5 C 0.031 3.969 6 N -0.531 5.531 7 C 0.059 3.941 8 C -0.099 4.099 9 C 0.047 3.953 10 C -0.511 4.511 11 H 0.054 0.946 12 C 0.062 3.938 13 N -0.891 5.891 14 Si 0.887 3.113 15 H -0.281 1.281 16 H -0.288 1.288 17 H -0.275 1.275 18 C -0.105 4.105 19 C 0.055 3.945 20 C -0.096 4.096 21 C -0.142 4.142 22 C -0.149 4.149 23 H 0.074 0.926 24 H 0.070 0.930 25 H 0.026 0.974 26 H 0.075 0.925 27 H 0.039 0.961 28 H 0.055 0.945 29 H 0.022 0.978 30 H 0.077 0.923 31 H 0.045 0.955 32 H 0.026 0.974 33 H 0.259 0.741 34 H 0.049 0.951 35 H 0.055 0.945 36 H 0.024 0.976 37 H 0.055 0.945 38 H 0.076 0.924 39 H 0.051 0.949 40 H 0.061 0.939 41 H 0.049 0.951 42 H 0.057 0.943 43 H 0.054 0.946 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.821 -3.740 -14.210 16.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.296 6.296 3 C 0.041 3.959 4 H 0.078 0.922 5 C -0.098 4.098 6 N -0.256 5.256 7 C -0.068 4.068 8 C -0.137 4.137 9 C 0.029 3.971 10 C -0.550 4.550 11 H 0.072 0.928 12 C -0.139 4.139 13 N -0.530 5.530 14 Si 0.715 3.285 15 H -0.208 1.208 16 H -0.214 1.214 17 H -0.199 1.199 18 C -0.143 4.143 19 C -0.073 4.073 20 C -0.115 4.115 21 C -0.199 4.199 22 C -0.206 4.206 23 H 0.093 0.907 24 H 0.088 0.912 25 H 0.045 0.955 26 H 0.093 0.907 27 H 0.057 0.943 28 H 0.074 0.926 29 H 0.041 0.959 30 H 0.095 0.905 31 H 0.064 0.936 32 H 0.044 0.956 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.042 0.958 37 H 0.073 0.927 38 H 0.095 0.905 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.069 0.931 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.704 -4.274 -14.082 16.611 hybrid contribution -0.517 0.871 0.787 1.282 sum 7.187 -3.403 -13.295 15.492 Atomic orbital electron populations 1.22851 0.80894 1.02286 1.00568 1.87787 1.19973 1.26895 1.94976 1.22155 0.94255 0.85502 0.93956 0.92168 1.22731 0.92702 1.00019 0.94329 1.61962 1.18318 1.41455 1.03846 1.22228 0.99501 0.98426 0.86637 1.21590 0.92856 0.99735 0.99541 1.18684 0.95317 0.94262 0.88858 1.21193 0.92852 1.48376 0.92538 0.92779 1.24962 0.96036 0.94991 0.97888 1.69944 1.26772 1.47414 1.08891 0.86662 0.84265 0.77819 0.79745 1.20754 1.21384 1.19949 1.21677 0.93763 1.00288 0.98578 1.22215 0.96293 0.90737 0.98044 1.21197 0.96645 0.97845 0.95802 1.21748 1.00892 1.01984 0.95265 1.21912 1.00471 0.96057 1.02201 0.90710 0.91162 0.95523 0.90653 0.94286 0.92636 0.95946 0.90494 0.93644 0.95583 0.93142 0.93196 0.92666 0.95781 0.92715 0.90534 0.92955 0.92011 0.93146 0.92406 0.92650 0.92070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.68 101.05 1.08 1.50 16 2 O -0.38 -5.62 9.78 -35.23 -0.34 -5.96 16 3 C 0.10 1.33 1.79 -26.73 -0.05 1.28 16 4 H 0.06 0.82 5.82 -51.93 -0.30 0.52 16 5 C 0.03 0.45 4.43 -3.82 -0.02 0.44 16 6 N -0.53 -9.36 3.35 -234.66 -0.79 -10.14 16 7 C 0.06 1.17 5.46 -3.83 -0.02 1.15 16 8 C -0.10 -2.32 5.19 -26.65 -0.14 -2.45 16 9 C 0.05 1.17 2.03 -91.65 -0.19 0.99 16 10 C -0.51 -14.06 8.49 -34.44 -0.29 -14.35 16 11 H 0.05 1.48 7.76 -52.49 -0.41 1.07 16 12 C 0.06 1.73 5.27 -17.82 -0.09 1.64 16 13 N -0.89 -25.65 12.03 55.43 0.67 -24.98 16 14 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 15 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 16 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 17 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 18 C -0.11 -2.19 5.32 -26.65 -0.14 -2.33 16 19 C 0.05 0.97 4.72 -3.83 -0.02 0.95 16 20 C -0.10 -1.05 2.72 -90.62 -0.25 -1.30 16 21 C -0.14 -1.40 8.99 37.16 0.33 -1.07 16 22 C -0.15 -1.44 8.83 37.16 0.33 -1.11 16 23 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 24 H 0.07 1.11 6.28 -51.93 -0.33 0.79 16 25 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 26 H 0.07 1.13 7.96 -51.93 -0.41 0.72 16 27 H 0.04 0.55 6.04 -51.93 -0.31 0.24 16 28 H 0.06 1.02 8.00 -51.93 -0.42 0.61 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 2.00 6.85 -51.93 -0.36 1.64 16 31 H 0.04 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.03 0.72 8.11 -51.93 -0.42 0.29 16 33 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 34 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.05 0.86 6.16 -51.93 -0.32 0.54 16 38 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.66 7.86 -51.93 -0.41 0.25 16 41 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.61 6.27 -51.93 -0.33 0.29 16 LS Contribution 333.07 15.07 5.02 5.02 Total: -1.00 -28.35 333.07 -8.14 -36.49 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -8.22 Total: -2.11 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: 0.54 Total: -14.66 kcal Atomic # 7 Polarization: -35.01 SS G_CDS: -0.12 Total: -35.13 kcal Atomic # 8 Polarization: -5.62 SS G_CDS: -0.34 Total: -5.96 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.35 -8.14 -36.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397236983.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.953 kcal (2) G-P(sol) polarization free energy of solvation -28.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds