Wall clock time and date at job start Mon Mar 30 2020 06:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42902 * 114.00044 * 2 1 4 4 H 1.08997 * 109.46910 * 336.67022 * 3 2 1 5 5 C 1.52997 * 109.47111 * 96.67211 * 3 2 1 6 6 N 1.46904 * 109.47122 * 293.37325 * 5 3 2 7 7 C 1.46849 * 111.00284 * 168.67673 * 6 5 3 8 8 C 1.53037 * 109.52215 * 185.83610 * 7 6 5 9 9 C 1.53117 * 109.27475 * 300.81262 * 8 7 6 10 10 C 1.50709 * 109.57138 * 177.59196 * 9 8 7 11 11 H 1.07994 * 119.99763 * 245.73819 * 10 9 8 12 12 C 1.37878 * 119.99505 * 65.74121 * 10 9 8 13 13 N 1.31511 * 120.00303 * 5.94721 * 12 10 9 14 14 Si 1.86805 * 119.99525 * 185.95034 * 12 10 9 15 15 H 1.48501 * 109.47111 * 94.99435 * 14 12 10 16 16 H 1.48502 * 109.46952 * 214.99022 * 14 12 10 17 17 H 1.48494 * 109.47068 * 334.99261 * 14 12 10 18 18 C 1.53120 * 109.16004 * 57.66004 * 9 8 7 19 19 C 1.46850 * 110.99199 * 292.87977 * 6 5 3 20 20 C 1.52996 * 109.46943 * 216.67227 * 3 2 1 21 21 C 1.52999 * 109.47388 * 60.98214 * 20 3 2 22 22 C 1.52999 * 109.47134 * 180.98650 * 20 3 2 23 23 H 1.09001 * 109.47344 * 183.21178 * 1 2 3 24 24 H 1.09002 * 109.46908 * 303.21095 * 1 2 3 25 25 H 1.08997 * 109.47538 * 63.20923 * 1 2 3 26 26 H 1.09007 * 109.47353 * 53.36456 * 5 3 2 27 27 H 1.08996 * 109.47205 * 173.36784 * 5 3 2 28 28 H 1.09005 * 109.45558 * 305.84737 * 7 6 5 29 29 H 1.08994 * 109.46396 * 65.81463 * 7 6 5 30 30 H 1.09004 * 109.49673 * 180.87900 * 8 7 6 31 31 H 1.08998 * 109.53695 * 60.77721 * 8 7 6 32 32 H 1.08993 * 109.52820 * 297.75351 * 9 8 7 33 33 H 0.97000 * 119.99965 * 180.02562 * 13 12 10 34 34 H 1.09002 * 109.50146 * 182.39966 * 18 9 8 35 35 H 1.08999 * 109.53495 * 62.30335 * 18 9 8 36 36 H 1.09003 * 109.46383 * 294.17474 * 19 6 5 37 37 H 1.08998 * 109.46544 * 54.16307 * 19 6 5 38 38 H 1.09005 * 109.47578 * 300.98571 * 20 3 2 39 39 H 1.09001 * 109.47029 * 175.00436 * 21 20 3 40 40 H 1.09000 * 109.47523 * 295.00919 * 21 20 3 41 41 H 1.09000 * 109.46782 * 55.00613 * 21 20 3 42 42 H 1.09000 * 109.47717 * 180.02562 * 22 20 3 43 43 H 1.09005 * 109.47134 * 299.99933 * 22 20 3 44 44 H 1.08997 * 109.47295 * 59.99547 * 22 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.2959 2.0212 -0.4070 5 6 2.3708 1.7032 1.4327 6 7 1.1413 1.8622 2.2209 7 6 1.4454 1.9785 3.6528 8 6 0.1410 1.9961 4.4529 9 6 -0.7161 3.1800 3.9964 10 6 -2.0278 3.1694 4.7383 11 1 -2.9497 2.9977 4.2027 12 6 -2.0508 3.3790 6.1009 13 7 -0.9453 3.7036 6.7350 14 14 -3.6522 3.2017 7.0462 15 1 -3.7437 1.8320 7.6126 16 1 -3.6892 4.1965 8.1482 17 1 -4.7966 3.4357 6.1294 18 6 -0.9779 3.0605 2.4925 19 6 0.3590 3.0120 1.7491 20 6 3.2746 1.3007 -0.8615 21 6 2.9104 0.9268 -2.2997 22 6 3.9104 2.6922 -0.8417 23 1 -0.3634 -1.0260 0.0576 24 1 -0.3633 0.5629 0.8598 25 1 -0.3634 0.4632 -0.9173 26 1 2.9912 0.9266 1.8802 27 1 2.9194 2.6449 1.4212 28 1 2.0518 1.1284 3.9654 29 1 1.9949 2.9023 3.8335 30 1 0.3666 2.0982 5.5144 31 1 -0.4027 1.0666 4.2841 32 1 -0.1891 4.1117 4.2014 33 1 -0.9614 3.8507 7.6936 34 1 -1.5518 3.9229 2.1534 35 1 -1.5393 2.1480 2.2916 36 1 0.9135 3.9310 1.9389 37 1 0.1760 2.9124 0.6793 38 1 3.9819 0.5724 -0.4648 39 1 3.7947 1.0096 -2.9316 40 1 2.5396 -0.0978 -2.3260 41 1 2.1375 1.6024 -2.6661 42 1 4.8110 2.6890 -1.4558 43 1 3.2032 3.4206 -1.2384 44 1 4.1699 2.9586 0.1829 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397236983.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:57 Heat of formation + Delta-G solvation = -81.298528 kcal Electronic energy + Delta-G solvation = -20423.989825 eV Core-core repulsion = 17567.820011 eV Total energy + Delta-G solvation = -2856.169813 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.51270 -38.77537 -36.01281 -35.45662 -33.23801 -31.57616 -29.69600 -28.09316 -27.53754 -26.45059 -24.48359 -23.61571 -22.48479 -20.87282 -20.39708 -18.44883 -17.62772 -17.06906 -16.51935 -16.39655 -15.67394 -15.57309 -15.01874 -14.87848 -14.62185 -14.36243 -14.10010 -13.93925 -13.69015 -13.45639 -13.02948 -13.00649 -12.86649 -12.75649 -12.51044 -12.27858 -12.17437 -11.94935 -11.90341 -11.82501 -11.68037 -11.38327 -11.32625 -10.76317 -10.69588 -10.44548 -10.28727 -9.08738 -8.11124 -6.20855 1.40201 1.41766 1.51592 2.43801 2.96187 2.96917 3.18956 3.84298 4.00661 4.13827 4.19091 4.21403 4.35218 4.38375 4.44735 4.55248 4.59988 4.67696 4.72596 4.74812 4.82503 4.84803 4.86113 4.94948 4.96789 5.03757 5.06709 5.10987 5.11872 5.23419 5.25978 5.33288 5.43127 5.48442 5.52201 5.62572 5.96188 5.99048 6.25058 6.30498 6.39888 6.45960 6.91558 7.46458 8.96801 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.040360 B = 0.004718 C = 0.004527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 693.596889 B = 5933.368990 C = 6184.241802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.391 6.391 3 C 0.102 3.898 4 H 0.061 0.939 5 C 0.031 3.969 6 N -0.534 5.534 7 C 0.070 3.930 8 C -0.088 4.088 9 C 0.045 3.955 10 C -0.532 4.532 11 H 0.051 0.949 12 C 0.014 3.986 13 N -0.920 5.920 14 Si 0.950 3.050 15 H -0.277 1.277 16 H -0.284 1.284 17 H -0.267 1.267 18 C -0.098 4.098 19 C 0.064 3.936 20 C -0.093 4.093 21 C -0.138 4.138 22 C -0.147 4.147 23 H 0.084 0.916 24 H 0.048 0.952 25 H 0.043 0.957 26 H 0.074 0.926 27 H 0.050 0.950 28 H 0.069 0.931 29 H 0.015 0.985 30 H 0.044 0.956 31 H 0.035 0.965 32 H -0.009 1.009 33 H 0.260 0.740 34 H 0.052 0.948 35 H 0.053 0.947 36 H 0.020 0.980 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.052 0.948 41 H 0.052 0.948 42 H 0.073 0.927 43 H 0.057 0.943 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.054 -4.115 -15.919 18.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C 0.044 3.956 4 H 0.079 0.921 5 C -0.096 4.096 6 N -0.259 5.259 7 C -0.057 4.057 8 C -0.127 4.127 9 C 0.026 3.974 10 C -0.570 4.570 11 H 0.070 0.930 12 C -0.185 4.185 13 N -0.560 5.560 14 Si 0.776 3.224 15 H -0.203 1.203 16 H -0.210 1.210 17 H -0.192 1.192 18 C -0.135 4.135 19 C -0.064 4.064 20 C -0.112 4.112 21 C -0.195 4.195 22 C -0.204 4.204 23 H 0.102 0.898 24 H 0.067 0.933 25 H 0.061 0.939 26 H 0.092 0.908 27 H 0.068 0.932 28 H 0.088 0.912 29 H 0.033 0.967 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.009 0.991 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.038 0.962 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.092 0.908 43 H 0.076 0.924 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.938 -4.652 -15.809 18.292 hybrid contribution -0.580 0.988 1.310 1.740 sum 7.357 -3.664 -14.499 16.667 Atomic orbital electron populations 1.22859 0.80524 1.02794 1.00362 1.87781 1.20460 1.27773 1.94964 1.22232 0.95321 0.84944 0.93135 0.92101 1.22822 0.91380 1.00601 0.94842 1.61926 1.19947 1.41240 1.02757 1.21996 0.97225 0.98686 0.87833 1.21348 0.94547 0.98518 0.98271 1.18646 0.94155 0.93018 0.91585 1.21577 0.93847 1.48336 0.93247 0.93044 1.25724 0.99215 0.94694 0.98844 1.70070 1.28708 1.48132 1.09071 0.85664 0.80526 0.77824 0.78384 1.20276 1.21023 1.19173 1.21532 0.95726 1.00257 0.96029 1.22103 0.94497 0.90685 0.99067 1.21193 0.95358 0.98676 0.95937 1.21717 1.01697 1.01402 0.94723 1.21899 1.01131 0.95125 1.02240 0.89774 0.93330 0.93885 0.90755 0.93169 0.91236 0.96679 0.93752 0.94606 0.99079 0.93140 0.92953 0.92831 0.96164 0.89908 0.90774 0.91332 0.92930 0.92899 0.90780 0.92422 0.92634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 10.68 113.37 1.21 2.01 16 2 O -0.39 -10.85 9.78 -148.98 -1.46 -12.30 16 3 C 0.10 2.48 1.79 30.59 0.05 2.54 16 4 H 0.06 1.48 5.82 -2.39 -0.01 1.47 16 5 C 0.03 0.87 4.43 86.30 0.38 1.25 16 6 N -0.53 -18.23 3.35 -896.34 -3.00 -21.24 16 7 C 0.07 2.76 5.46 86.33 0.47 3.24 16 8 C -0.09 -4.25 5.19 30.65 0.16 -4.09 16 9 C 0.04 2.27 2.03 -11.46 -0.02 2.24 16 10 C -0.53 -29.80 8.49 25.60 0.22 -29.59 16 11 H 0.05 2.83 7.76 -2.91 -0.02 2.81 16 12 C 0.01 0.77 5.27 84.66 0.45 1.22 16 13 N -0.92 -54.29 12.03 21.45 0.26 -54.03 16 14 Si 0.95 44.24 29.54 68.60 2.03 46.27 16 15 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 16 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 17 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 18 C -0.10 -4.04 5.32 30.65 0.16 -3.88 16 19 C 0.06 2.20 4.72 86.33 0.41 2.60 16 20 C -0.09 -1.79 2.72 -10.80 -0.03 -1.82 16 21 C -0.14 -2.36 8.99 71.98 0.65 -1.71 16 22 C -0.15 -2.42 8.83 71.98 0.64 -1.78 16 23 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 24 H 0.05 1.46 6.28 -2.39 -0.01 1.45 16 25 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.07 2.10 7.96 -2.38 -0.02 2.08 16 27 H 0.05 1.31 6.04 -2.39 -0.01 1.30 16 28 H 0.07 2.52 8.00 -2.38 -0.02 2.50 16 29 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.04 2.39 6.85 -2.39 -0.02 2.38 16 31 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 32 H -0.01 -0.52 8.11 -2.39 -0.02 -0.53 16 33 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 34 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.02 0.71 8.14 -2.39 -0.02 0.70 16 37 H 0.08 2.41 6.16 -2.39 -0.01 2.39 16 38 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 39 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.05 1.00 7.86 -2.39 -0.02 0.98 16 41 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 44 H 0.05 0.98 6.27 -2.39 -0.01 0.96 16 Total: -1.00 -61.23 333.07 3.50 -57.73 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: 0.93 Total: 11.33 kcal Atomic # 6 Polarization: -32.50 SS G_CDS: 4.74 Total: -27.76 kcal Atomic # 7 Polarization: -72.52 SS G_CDS: -2.74 Total: -75.27 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: -1.46 Total: -12.30 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -61.23 3.50 -57.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397236983.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.569 kcal (2) G-P(sol) polarization free energy of solvation -61.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds