Wall clock time and date at job start Mon Mar 30 2020 06:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42901 * 114.00058 * 2 1 4 4 H 1.08994 * 109.46973 * 7.78566 * 3 2 1 5 5 C 1.52995 * 109.47272 * 247.78223 * 3 2 1 6 6 N 1.46903 * 109.47323 * 321.27004 * 5 3 2 7 7 C 1.46847 * 111.00363 * 77.56130 * 6 5 3 8 8 C 1.53032 * 109.51670 * 174.16987 * 7 6 5 9 9 C 1.53093 * 109.29024 * 59.18585 * 8 7 6 10 10 C 1.53119 * 109.15352 * 302.33459 * 9 8 7 11 11 H 1.08997 * 109.50422 * 297.71705 * 10 9 8 12 12 C 1.50707 * 109.50139 * 177.59590 * 10 9 8 13 13 H 1.08002 * 119.99906 * 240.19650 * 12 10 9 14 14 C 1.37872 * 119.99887 * 60.20129 * 12 10 9 15 15 N 1.31518 * 119.99922 * 0.02562 * 14 12 10 16 16 Si 1.86802 * 120.00228 * 179.97438 * 14 12 10 17 17 H 1.48505 * 109.46554 * 59.99747 * 16 14 12 18 18 H 1.48496 * 109.47551 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.46975 * 300.00352 * 16 14 12 20 20 C 1.46847 * 110.99820 * 313.35502 * 6 5 3 21 21 C 1.52998 * 109.47141 * 127.78398 * 3 2 1 22 22 C 1.52996 * 109.47122 * 180.92056 * 21 3 2 23 23 C 1.53002 * 109.46880 * 300.91994 * 21 3 2 24 24 H 1.09000 * 109.47250 * 60.21172 * 1 2 3 25 25 H 1.09005 * 109.47412 * 180.21430 * 1 2 3 26 26 H 1.09004 * 109.47213 * 300.20853 * 1 2 3 27 27 H 1.09000 * 109.47626 * 201.26490 * 5 3 2 28 28 H 1.09005 * 109.47331 * 81.26588 * 5 3 2 29 29 H 1.08996 * 109.45966 * 294.18216 * 7 6 5 30 30 H 1.09004 * 109.45857 * 54.15707 * 7 6 5 31 31 H 1.08998 * 109.50486 * 179.11774 * 8 7 6 32 32 H 1.09000 * 109.50336 * 299.23045 * 8 7 6 33 33 H 1.09009 * 109.52482 * 182.43632 * 9 8 7 34 34 H 1.08994 * 109.57991 * 62.27786 * 9 8 7 35 35 H 0.97001 * 119.99501 * 179.97438 * 15 14 12 36 36 H 1.09005 * 109.45940 * 305.85441 * 20 6 5 37 37 H 1.08998 * 109.46903 * 65.83116 * 20 6 5 38 38 H 1.09000 * 109.47503 * 60.92098 * 21 3 2 39 39 H 1.09003 * 109.47346 * 179.97438 * 22 21 3 40 40 H 1.08997 * 109.47442 * 299.99574 * 22 21 3 41 41 H 1.09006 * 109.47066 * 60.00347 * 22 21 3 42 42 H 1.08997 * 109.47380 * 60.00613 * 23 21 3 43 43 H 1.09000 * 109.47080 * 179.97438 * 23 21 3 44 44 H 1.08992 * 109.47602 * 299.99880 * 23 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.2278 2.0515 0.1392 5 6 2.7159 1.5495 -1.3353 6 7 3.3847 0.3154 -1.7685 7 6 2.4195 -0.6355 -2.3346 8 6 3.1662 -1.8431 -2.9055 9 6 3.9748 -2.5112 -1.7903 10 6 4.9383 -1.4865 -1.1854 11 1 5.6400 -1.1515 -1.9492 12 6 5.6967 -2.1196 -0.0473 13 1 5.6178 -1.7093 0.9486 14 6 6.4912 -3.2226 -0.2775 15 7 6.5877 -3.7219 -1.4904 16 14 7.4318 -4.0071 1.1329 17 1 6.4746 -4.4649 2.1720 18 1 8.2061 -5.1685 0.6263 19 1 8.3626 -3.0110 1.7217 20 6 4.1403 -0.2892 -0.6640 21 6 3.0250 1.4119 1.1400 22 6 3.6305 2.8168 1.1543 23 6 2.3238 1.1452 2.4735 24 1 -0.3634 0.5105 -0.8919 25 1 -0.3634 -1.0277 0.0038 26 1 -0.3634 0.5171 0.8881 27 1 3.4557 2.3411 -1.2161 28 1 1.9826 1.8476 -2.0848 29 1 1.7358 -0.9674 -1.5532 30 1 1.8540 -0.1491 -3.1294 31 1 2.4486 -2.5561 -3.3115 32 1 3.8400 -1.5137 -3.6964 33 1 4.5423 -3.3461 -2.2018 34 1 3.2987 -2.8763 -1.0173 35 1 7.1470 -4.4977 -1.6524 36 1 4.8247 0.4489 -0.2454 37 1 3.4487 -0.6229 0.1095 38 1 3.8161 0.6768 0.9921 39 1 4.3532 2.8929 1.9668 40 1 4.1301 3.0069 0.2044 41 1 2.8394 3.5520 1.3023 42 1 1.8925 0.1442 2.4634 43 1 3.0469 1.2206 3.2857 44 1 1.5328 1.8802 2.6215 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397644909.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:09 Heat of formation + Delta-G solvation = -39.281835 kcal Electronic energy + Delta-G solvation = -21307.271664 eV Core-core repulsion = 18452.923831 eV Total energy + Delta-G solvation = -2854.347833 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.76797 -36.79770 -34.95267 -33.37693 -31.52296 -29.70779 -27.98219 -27.11240 -26.11935 -24.83687 -23.65256 -21.37900 -21.04330 -19.78021 -18.41994 -16.77152 -15.97603 -15.44410 -15.37559 -14.69752 -14.25997 -14.07854 -13.74873 -13.32126 -13.01271 -12.79029 -12.47681 -12.33344 -12.17809 -12.03668 -11.61378 -11.54833 -11.32523 -11.07003 -10.96191 -10.83370 -10.68940 -10.53603 -10.40374 -10.06695 -9.86387 -9.72769 -9.36630 -9.19117 -8.77403 -8.50677 -8.17186 -7.16817 -5.86416 -3.91749 3.38221 3.42621 3.45167 3.88154 4.51315 4.78195 4.97066 5.16395 5.21158 5.33540 5.43383 5.43827 5.46944 5.61964 5.65092 5.74011 5.78994 5.92966 5.98077 5.98628 6.03646 6.15941 6.23403 6.31413 6.36719 6.50542 6.60313 6.61615 6.70984 6.73327 6.97562 7.07864 7.18254 7.40681 7.41705 7.59777 7.86721 7.92967 8.07534 8.25251 8.32869 8.62871 9.12656 9.71550 11.19523 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.020480 B = 0.007630 C = 0.006487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.858954 B = 3668.645800 C = 4315.378527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.361 6.361 3 C 0.064 3.936 4 H 0.053 0.947 5 C 0.037 3.963 6 N -0.527 5.527 7 C 0.051 3.949 8 C -0.117 4.117 9 C -0.106 4.106 10 C 0.053 3.947 11 H 0.028 0.972 12 C -0.509 4.509 13 H 0.051 0.949 14 C 0.062 3.938 15 N -0.889 5.889 16 Si 0.887 3.113 17 H -0.279 1.279 18 H -0.288 1.288 19 H -0.278 1.278 20 C 0.061 3.939 21 C -0.136 4.136 22 C -0.145 4.145 23 C -0.140 4.140 24 H 0.035 0.965 25 H 0.081 0.919 26 H 0.035 0.965 27 H 0.083 0.917 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.042 0.958 31 H 0.040 0.960 32 H 0.053 0.947 33 H 0.085 0.915 34 H 0.030 0.970 35 H 0.258 0.742 36 H 0.054 0.946 37 H 0.050 0.950 38 H 0.118 0.882 39 H 0.056 0.944 40 H 0.061 0.939 41 H 0.046 0.954 42 H 0.059 0.941 43 H 0.052 0.948 44 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.100 10.147 2.612 15.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.279 6.279 3 C 0.004 3.996 4 H 0.071 0.929 5 C -0.093 4.093 6 N -0.251 5.251 7 C -0.077 4.077 8 C -0.155 4.155 9 C -0.144 4.144 10 C 0.035 3.965 11 H 0.046 0.954 12 C -0.548 4.548 13 H 0.069 0.931 14 C -0.139 4.139 15 N -0.529 5.529 16 Si 0.715 3.285 17 H -0.204 1.204 18 H -0.214 1.214 19 H -0.204 1.204 20 C -0.065 4.065 21 C -0.154 4.154 22 C -0.202 4.202 23 C -0.197 4.197 24 H 0.054 0.946 25 H 0.100 0.900 26 H 0.053 0.947 27 H 0.101 0.899 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.104 0.896 34 H 0.049 0.951 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.135 0.865 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.065 0.935 42 H 0.078 0.922 43 H 0.071 0.929 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -10.565 9.952 2.134 14.670 hybrid contribution -0.352 -0.379 1.388 1.482 sum -10.917 9.573 3.523 14.941 Atomic orbital electron populations 1.22755 0.82598 1.02340 0.99120 1.88144 1.18325 1.27033 1.94414 1.22993 0.95096 0.84705 0.96794 0.92921 1.22719 0.97478 0.95380 0.93692 1.62164 1.24991 1.04785 1.33129 1.22344 0.94174 0.93294 0.97882 1.21667 0.98464 0.95688 0.99707 1.21575 0.96789 1.00870 0.95184 1.18681 0.92533 0.89773 0.95560 0.95353 1.21125 1.26490 1.12558 0.94627 0.93053 1.24924 0.96631 0.97015 0.95299 1.69899 1.39524 1.23755 1.19673 0.86746 0.80065 0.78833 0.82830 1.20437 1.21421 1.20411 1.22674 0.95532 0.96990 0.91333 1.22172 0.99678 0.99390 0.94168 1.21882 1.00349 0.95811 1.02204 1.21729 0.99787 1.01479 0.96746 0.94626 0.89997 0.94658 0.89918 0.92156 0.91961 0.93990 0.94104 0.92819 0.89638 0.95148 0.93178 0.92767 0.93211 0.86450 0.92448 0.91968 0.93464 0.92190 0.92926 0.94032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.30 101.05 1.04 1.38 16 2 O -0.36 -5.64 4.65 -35.23 -0.16 -5.80 16 3 C 0.06 0.90 2.01 -26.73 -0.05 0.84 16 4 H 0.05 0.65 7.62 -51.93 -0.40 0.26 16 5 C 0.04 0.56 5.73 -3.83 -0.02 0.54 16 6 N -0.53 -10.07 4.86 -234.67 -1.14 -11.21 16 7 C 0.05 0.94 5.07 -3.84 -0.02 0.92 16 8 C -0.12 -2.45 6.09 -26.67 -0.16 -2.61 16 9 C -0.11 -2.62 5.03 -26.62 -0.13 -2.76 16 10 C 0.05 1.37 2.26 -91.69 -0.21 1.17 16 11 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 12 C -0.51 -14.24 8.56 -34.44 -0.29 -14.53 16 13 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 14 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 15 N -0.89 -26.01 11.36 55.43 0.63 -25.38 16 16 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 C 0.06 1.31 2.70 -3.83 -0.01 1.30 16 21 C -0.14 -1.96 2.07 -90.62 -0.19 -2.15 16 22 C -0.15 -1.77 8.93 37.16 0.33 -1.44 16 23 C -0.14 -1.86 9.04 37.16 0.34 -1.52 16 24 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 25 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.08 1.19 5.68 -51.93 -0.29 0.90 16 28 H 0.06 0.84 7.84 -51.93 -0.41 0.44 16 29 H 0.06 1.17 4.83 -51.93 -0.25 0.92 16 30 H 0.04 0.71 7.95 -51.93 -0.41 0.30 16 31 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.09 2.35 6.17 -51.92 -0.32 2.03 16 34 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 36 H 0.05 1.17 6.77 -51.93 -0.35 0.81 16 37 H 0.05 1.10 4.72 -51.93 -0.25 0.86 16 38 H 0.12 2.08 3.70 -51.93 -0.19 1.88 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.77 6.08 -51.93 -0.32 0.45 16 41 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.06 0.86 7.66 -51.93 -0.40 0.47 16 43 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 319.44 15.07 4.81 4.81 Total: -1.00 -29.15 319.44 -8.13 -37.28 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -7.78 Total: 0.80 kcal Atomic # 6 Polarization: -17.71 SS G_CDS: 0.52 Total: -17.19 kcal Atomic # 7 Polarization: -36.07 SS G_CDS: -0.51 Total: -36.58 kcal Atomic # 8 Polarization: -5.64 SS G_CDS: -0.16 Total: -5.80 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.15 -8.13 -37.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397644909.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.002 kcal (2) G-P(sol) polarization free energy of solvation -29.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds